Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011483

Physical Location & Seq

Genomic Coordinates Reverse (-)

4758241 .. 4765816

Gene Structure 7576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026667

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2748 bp

ATGCCTTCTATAGACGTTTCCGATTATGTGCTGGAGGCTCCGAAGAAGGAGAAGAAGATGAAAAAGTCGAAAAAGGAGTCCATAACCGACTCTCCGATTAGTGAGAAGAAGAGCAGTAGCAAGAAAGAGTCAAAGCTGAAGAAGCGGAAAGCGCTGGATATGGAGGCCGACGACGATGACAGGAGCGAGACCAGCTCCGAGCTCGGCGAGCCTGTCAATTTGAAGCCGAACGGCGATTCTTCGGTGGAGAAGAGCAAGAAGAAATCGAAGAAGGCCAAGGTGGAGGAGGAGGAGGAGGAAGAGGAGAAGGTTGAGGTGAGGAAGGATGATCCTAATGCCGTAACCAAGTTTCGGATTTCGGCGCCGTTGAGGGCTAAGCTGAAGGAGAAGGGGATCGAGGCCTTGTTTACGATTCAGGCCATGACGTTCGACACCATTTTGGACGGGGCGGACTTGGTGGGCCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCTTTTGTGTTGCCTATATTGGAGTCGTTAACAAATGGTTCTGCTAAAGAATTTCGAAAGACTGGATACGGCAGAGCACCGACTGTTATTGTTCTTTTACCCACCAGGGAGTTGGCCAAGCAGGTGTTTGCGGACTTTGAATTTTATGGTGGTGCTGTGGGGTTAGCATCGTGTTGTGTATATGGTGGATCTCCTTACGCAGCTCAAGAATATAAGTTGAAGAGAGGGGTTGATGTCATTGTGGGAACACCTGGTCGTATCAAGGATCATATTGAGAGGGGGAATATAGACTTGAGCACTTTGAAGTTTCGGGTCCTTGATGAAGCTGATGAAATGCTGAGGATGGGTTTTGTTGATGACGTTGAACAAATTCTAGGCAAGGTCAAAGATGTAACTAAAGTTCAAACGCTTCTCTTCAGTGCAACCTTACCCTCTTGGGTGCAAAATATTTCCAAAAGGTTCCTTAAATCAGATAAGAAAACTGCAGATCTGGTTGGTAATGAAAAGATGAAGGCCAGCGTCAATGTTAGGCATATTGTTCTTCCCTGCTCTAGTTCAGCTAGAGTAGACGTTATTCCTGATATCATTCGTTGTTATAGCAGTGGAGGTCGCACTATTATTTTCACTGAAACAAAGGATTGTGCTTCTGAGCTTTCTGAGAGGTTGCATGGAGCAAGACCTTTGCACGGGGACATACAGCAAGGTCAACGGGAGGTCACACTTGCAGGTTTCAGGTCTGGCAAATTCTCGACATTAGTAGCCACAAATGTGGCAGCTCGTGGACTGGATATCAATGATGTTCAATTAATTATTCAGTGTGAACCTCCACGTGATGTAGAAGACTATATCCATCGATCTGGACGCACAGGGAGAGCAGGCAATTCTGGAGTTGCTGTAATGCTTTATGACCCTAGAAAGTCAAACATATCAAAGATCGAAAGAGAATCTGGGGTGAAATTTGAGCATGTTTCTGCTCCTCAGCCAATTGACGTTGCCAAAGCTGCAGGTCTTAGTGCAGCAGAAATGATTACTAATGTCTCTGATAGCGTAATTCCTGCATTCAAGAGTGTTGCTGAGGAGCTTCTAAACACCTCGGGCCTATCTGCAGTAGATCTACTGTCAAAGGCTCTTGCTAAGGCTGCTGGTTACACCGATGTAAAGAAGAGGTCACTTCTGAGTTCTATGGAGAATCATGTCACCGTACTGCTCGAAGCTGGAAAGCCCATTTACACAGCATCTTTTGCTTATTCGGCCTTGAGGAGGTTCTTGCCGGAGGAGAAGGTCGAGTCAGTGAAGGGTATGGCGCTAACAACTGATGGAAAGGGTGCAGTGTTTGATGTAGCTGCTGAAGATTTGGATATGTTTCTTACTGGTTCGCAAAATGCAGCTGGTATCAGCATACAGGTCTTGGACTCTTTGCCGAGTTTACAAGAAAAAGAAGCAAGGGGAGGAAGATTTGGCGGTGGTGGCCGTGGTGGTAGTAGGTTTGGTGGAAGAGGAGGTGGCAGGGGTTTCTCTAATGGAAGAAATGATAGGTTTGGCGGCGGCGGCAGAGGCCGCGGCAACTACAACAGATGTGGCCGAGTGACTGAACTAATTATTCCAAGTGGAGGCAAGAGCACATCCGACGATGAAGAAAAATATTCAGTAGAGGGCCTTGATTGGCTCATCATAGAGCCCGTCTCCGGAGTCTTCTCCATCAAGTCTTCATCTTTGGCCTCAAAACCAGCCAAGATTTCTGGGTTTTCTCCTTCCCATTCTATTTTACACAAACCAATTCCACACACACAGTTGAGATATTATCATACGGATCGGCGGCATTTTGATCCACGCCGGTGGGCTGACCGGTTCAAGAGATATTGGTTATGGAAAGAGATATCTGATTTACCCCGGAATTTTATTCCTGTTGTTACTATTGTGGACGTTGAGACTGTGCAGGCATTGATGAATGGTGAAGAGGGGAAAATGGAAGGGAAGTGTTCACTTGAGGATGAGAAGAAGGGAAAGGATATTGGTGTTAAAGACGCTACTTCGCATTTGGTTGACTTGAATTGGGAGGTTTTGGTGGTGGATGAGCTGATTGTCAATGCGTATTGCTTGCCAGGTGGGAAGATTGTGGTCTTCACAGGGATGGAATTGCAAGCGGATCACATTGGCCTGCTATTGATTGCTTCTGCTGGATATGATCCGAGAGTGGCTCCAACTGTGTACGAAAAGTTGGGAGAAATCTCAGGTGGAGATTCTGCTCTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

916

Amino Acids

99.81

Weight (kDa)

8.49

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	137 - 313	3.3e-44	DEAD/DEAH box helicase
Helicase_C	PF00271	353 - 457	2.9e-27	Helicase conserved C-terminal domain
DD_DDX21-DDX50	PF26142	491 - 543	1.9e-18	DDX21/DDX50 dimerisation domain
GUCT	PF08152	546 - 641	2.7e-28	GUCT (NUC152) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62190
fragaria_vesca	FvH4_7g28410
malus_domestica	MD01G1187800.v1.1 MD07G1259900.v1.1 MD07G1260300.v1.1
prunus_persica	Prupe.2G284200_v2.0.a1 Prupe.2G284200_v2.0.a1 Prupe.2G284200_v2.0.a1
pyrus_communis	pycom07g23330
rosa_chinensis	RchiOBHm_Chr1g0375371
rosa_laevigata	RLG00000026667
rosa_multiflora	Rmu_sc0000554.1_g000041 Rmu_ssc0000106.1_g000003
rosa_roxburghii	Rroxscaffold_4G00282810
rosa_rugosa	Rorug01G0390800
rosa_samantha	Rh1AG401100 Rh1BG363200 Rh1CG376500 Rh1DG394000
rosa_wichuraiana	Rw1G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	604
Acc36I	ACCTGC	3 cut(s)	604, 1208, 1487
AccB1I	GGYRCC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	1059
AccII	CGCG	1 cut(s)	2052
AccIII	TCCGGA	1 cut(s)	2177
AclWI	GGATC	8 cut(s)	323, 401, 688, 765, 2310, 2312, 2646, 2672
AcoI	YGGCCR	3 cut(s)	606, 1960, 2071
AcsI	RAATTY	6 cut(s)	542, 632, 861, 1235, 1448, 2386
AcuI	CTGAAG	4 cut(s)	158, 401, 892, 1860
AcvI	CACGTG	1 cut(s)	1322
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	2 cut(s)	1695, 2702
AfeI	AGCGCT	1 cut(s)	153
AfiI	CCNNNNNNNGG	5 cut(s)	351, 1178, 1752, 2102, 2177
AgeI	ACCGGT	2 cut(s)	473, 2337
AjnI	CCWGG	3 cut(s)	596, 742, 2593
AleI	CACNNNNGTG	2 cut(s)	1259, 2326
Alw21I	GWGCWC	4 cut(s)	204, 571, 791, 2114
Alw26I	GTCTC	4 cut(s)	182, 1534, 2179, 2414
AlwI	GGATC	8 cut(s)	323, 401, 688, 765, 2310, 2312, 2646, 2672
Ama87I	CYCGRG	1 cut(s)	1585
Aor13HI	TCCGGA	1 cut(s)	2177
Aor51HI	AGCGCT	1 cut(s)	153
ApeKI	GCWGC	7 cut(s)	692, 1265, 1493, 1508, 1631, 1835, 1877
ApoI	RAATTY	6 cut(s)	542, 632, 861, 1235, 1448, 2386
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AseI	ATTAAT	1 cut(s)	1298
AsiGI	ACCGGT	2 cut(s)	473, 2337
Asp700I	GAANNNNTTC	1 cut(s)	861
AspLEI	GCGC	3 cut(s)	154, 364, 1798
AspS9I	GGNCC	4 cut(s)	460, 805, 1588, 2146
AsuC2I	CCSGG	2 cut(s)	464, 2383
AsuHPI	GGTGA	4 cut(s)	328, 1456, 1681, 2456
AsuII	TTCGAA	1 cut(s)	547
AvaI	CYCGRG	1 cut(s)	1585
AvaII	GGWCC	1 cut(s)	805
BalI	TGGCCA	1 cut(s)	608
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	3 cut(s)	204, 469, 2172
BauI	CACGAG	1 cut(s)	1269
BbrPI	CACGTG	1 cut(s)	1322
BbsI	GAAGAC	4 cut(s)	1338, 2176, 2190, 2605
Bbv12I	GWGCWC	4 cut(s)	204, 571, 791, 2114
BbvCI	CCTCAGC	3 cut(s)	830, 1470, 1566
BbvI	GCAGC	7 cut(s)	704, 1277, 1480, 1520, 1618, 1822, 1889
BccI	CCATC	5 cut(s)	829, 1350, 1802, 2198, 2617
BceAI	ACGGC	5 cut(s)	247, 323, 349, 577, 1947
BciT130I	CCWGG	3 cut(s)	598, 744, 2595
BciVI	GTATCC	1 cut(s)	551
BcnI	CCSGG	2 cut(s)	464, 2383
BcoDI	GTCTC	4 cut(s)	182, 1534, 2179, 2414
BfaI	CTAG	4 cut(s)	866, 1044, 1053, 1404
BfmI	CTRYAG	4 cut(s)	9, 975, 1494, 1596
BfoI	RGCGCY	3 cut(s)	155, 365, 1799
BfuAI	ACCTGC	3 cut(s)	604, 1208, 1487
BfuI	GTATCC	1 cut(s)	551
BglII	AGATCT	2 cut(s)	979, 1603
BlpI	GCTNAGC	1 cut(s)	375
Bme1390I	CCNGG	5 cut(s)	464, 598, 744, 2383, 2595
Bme18I	GGWCC	1 cut(s)	805
BmeT110I	CYCGRG	1 cut(s)	1585
BmgT120I	GGNCC	4 cut(s)	460, 805, 1588, 2146
BmiI	GGNNCC	5 cut(s)	39, 363, 806, 953, 2691
BmrFI	CCNGG	5 cut(s)	464, 598, 744, 2383, 2595
BmsI	GCATC	2 cut(s)	668, 1736
BpiI	GAAGAC	4 cut(s)	1338, 2176, 2190, 2605
BplI	GAGNNNNNCTC	6 cut(s)	179, 211, 2159, 2191, 2674, 2706
BpmI	CTGGAG	2 cut(s)	53, 1398
Bpu10I	CCTNAGC	4 cut(s)	830, 1470, 1566, 1626
Bpu1102I	GCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	547
BpuEI	CTTGAG	4 cut(s)	681, 805, 1768, 2498
BpuMI	CCSGG	2 cut(s)	464, 2383
Bsa29I	ATCGAT	1 cut(s)	1345
BsaAI	YACGTR	1 cut(s)	1322
BsaHI	GRCGYC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	6 cut(s)	276, 597, 1584, 1963, 2050, 2381
BsaWI	WCCGGW	3 cut(s)	473, 2177, 2337
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 1371, 1401
Bsc4I	CCNNNNNNNGG	5 cut(s)	351, 1178, 1752, 2102, 2177
Bse118I	RCCGGY	3 cut(s)	473, 2325, 2337
Bse1I	ACTGG	3 cut(s)	559, 1281, 1867
BseAI	TCCGGA	1 cut(s)	2177
BseBI	CCWGG	3 cut(s)	598, 744, 2595
BseCI	ATCGAT	1 cut(s)	1345
BseDI	CCNNGG	6 cut(s)	276, 597, 1584, 1963, 2050, 2381
BseGI	GGATG	6 cut(s)	331, 840, 2114, 2488, 2569, 2628
BseLI	CCNNNNNNNGG	5 cut(s)	351, 1178, 1752, 2102, 2177
BseMII	CTCAG	7 cut(s)	821, 1131, 1140, 1484, 1557, 1658, 2736
BseNI	ACTGG	3 cut(s)	559, 1281, 1867
BseXI	GCAGC	7 cut(s)	704, 1277, 1480, 1520, 1618, 1822, 1889
BsgI	GTGCAG	3 cut(s)	1527, 1839, 2447
Bsh1236I	CGCG	1 cut(s)	2052
BshNI	GGYRCC	1 cut(s)	361
BshTI	ACCGGT	2 cut(s)	473, 2337
BshVI	ATCGAT	1 cut(s)	1345
BsiHKAI	GWGCWC	4 cut(s)	204, 571, 791, 2114
BsiHKCI	CYCGRG	1 cut(s)	1585
BsiSI	CCGG	7 cut(s)	463, 474, 1763, 2178, 2326, 2338, 2383
BslFI	GGGAC	1 cut(s)	1196
BslI	CCNNNNNNNGG	5 cut(s)	351, 1178, 1752, 2102, 2177
BsmAI	GTCTC	4 cut(s)	182, 1534, 2179, 2414
BsmBI	CGTCTC	1 cut(s)	2179
BsmFI	GGGAC	1 cut(s)	1196
BsmI	GAATGC	1 cut(s)	1550
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	1585
Bsp119I	TTCGAA	1 cut(s)	547
Bsp1286I	GDGCHC	6 cut(s)	204, 469, 571, 791, 2114, 2172
Bsp13I	TCCGGA	1 cut(s)	2177
Bsp1720I	GCTNAGC	1 cut(s)	375
BspCNI	CTCAG	7 cut(s)	822, 1132, 1141, 1483, 1558, 1659, 2735
BspDI	ATCGAT	1 cut(s)	1345
BspEI	TCCGGA	1 cut(s)	2177
BspFNI	CGCG	1 cut(s)	2052
BspLI	GGNNCC	5 cut(s)	39, 363, 806, 953, 2691
BspMAI	CTGCAG	3 cut(s)	979, 1498, 1600
BspMI	ACCTGC	3 cut(s)	604, 1208, 1487
BspPI	GGATC	8 cut(s)	323, 401, 688, 765, 2310, 2312, 2646, 2672
BspQI	GCTCTTC	2 cut(s)	104, 245
BspT104I	TTCGAA	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	3 cut(s)	473, 2325, 2337
BsrI	ACTGG	3 cut(s)	559, 1281, 1867
BssAI	RCCGGY	3 cut(s)	473, 2325, 2337
BssECI	CCNNGG	6 cut(s)	276, 597, 1584, 1963, 2050, 2381
BssNI	GRCGYC	1 cut(s)	362
BssSI	CACGAG	1 cut(s)	1269
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	1269
Bst2UI	CCWGG	3 cut(s)	598, 744, 2595
Bst4CI	ACNGT	6 cut(s)	577, 1611, 1693, 2283, 2425, 2698
Bst6I	CTCTTC	8 cut(s)	104, 245, 294, 707, 911, 1649, 1981, 2442
BstACI	GRCGYC	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	1733
BstBAI	YACGTR	1 cut(s)	1322
BstBI	TTCGAA	1 cut(s)	547
BstC8I	GCNNGC	8 cut(s)	209, 469, 1009, 1369, 2430, 2591, 2634, 2651
BstDSI	CCRYGG	2 cut(s)	1963, 2050
BstENI	CCTNNNNNAGG	1 cut(s)	1750
BstF5I	GGATG	6 cut(s)	331, 840, 2114, 2488, 2569, 2628
BstFNI	CGCG	1 cut(s)	2052
BstH2I	RGCGCY	3 cut(s)	155, 365, 1799
BstHHI	GCGC	3 cut(s)	154, 364, 1798
BstMAI	GTCTC	4 cut(s)	182, 1534, 2179, 2414
BstNI	CCWGG	3 cut(s)	598, 744, 2595
BstNSI	RCATGY	1 cut(s)	1460
BstSCI	CCNGG	5 cut(s)	462, 596, 742, 2381, 2593
BstSFI	CTRYAG	4 cut(s)	9, 975, 1494, 1596
BstUI	CGCG	1 cut(s)	2052
BstV1I	GCAGC	7 cut(s)	704, 1277, 1480, 1520, 1618, 1822, 1889
BstV2I	GAAGAC	4 cut(s)	1338, 2176, 2190, 2605
BstX2I	RGATCY	3 cut(s)	680, 979, 1603
BstXI	CCANNNNNNTGG	4 cut(s)	604, 1261, 1349, 2328
BstYI	RGATCY	3 cut(s)	680, 979, 1603
Bsu15I	ATCGAT	1 cut(s)	1345
BsuI	GTATCC	1 cut(s)	551
BsuTUI	ATCGAT	1 cut(s)	1345
BtgI	CCRYGG	2 cut(s)	1963, 2050
BtsCI	GGATG	6 cut(s)	331, 840, 2114, 2488, 2569, 2628
BtsI	GCAGTG	2 cut(s)	1099, 1827
BtsIMutI	CAGTG	6 cut(s)	916, 1099, 1116, 1313, 1788, 1827
BveI	ACCTGC	3 cut(s)	604, 1208, 1487
Cac8I	GCNNGC	8 cut(s)	209, 469, 1009, 1369, 2430, 2591, 2634, 2651
CfoI	GCGC	3 cut(s)	154, 364, 1798
Cfr10I	RCCGGY	3 cut(s)	473, 2325, 2337
Cfr13I	GGNCC	4 cut(s)	460, 805, 1588, 2146
Cfr42I	CCGCGG	1 cut(s)	2053
ClaI	ATCGAT	1 cut(s)	1345
CseI	GACGC	3 cut(s)	1000, 1362, 2525
CsiI	ACCWGGT	1 cut(s)	742
Csp6I	GTAC	2 cut(s)	1694, 2701
CspAI	ACCGGT	2 cut(s)	473, 2337
CspCI	CAANNNNNGTGG	2 cut(s)	2050, 2085
CviAII	CATG	4 cut(s)	421, 1160, 1457, 1685
CviQI	GTAC	2 cut(s)	1694, 2701
DinI	GGCGCC	1 cut(s)	363
EaeI	YGGCCR	3 cut(s)	606, 1960, 2071
Eam1104I	CTCTTC	8 cut(s)	104, 245, 294, 707, 911, 1649, 1981, 2442
EarI	CTCTTC	8 cut(s)	104, 245, 294, 707, 911, 1649, 1981, 2442
EciI	GGCGGA	1 cut(s)	464
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	401
Eco24I	GRGCYC	3 cut(s)	204, 469, 2172
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	3 cut(s)	1075, 1282, 2370
Eco47I	GGWCC	1 cut(s)	805
Eco47III	AGCGCT	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	4 cut(s)	158, 401, 892, 1860
Eco72I	CACGTG	1 cut(s)	1322
Eco88I	CYCGRG	1 cut(s)	1585
EcoICRI	GAGCTC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	1750
EcoO109I	RGGNCCY	2 cut(s)	805, 2146
EcoRII	CCWGG	3 cut(s)	596, 742, 2593
EcoRV	GATATC	3 cut(s)	1075, 1282, 2370
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	3 cut(s)	204, 469, 2172
EgeI	GGCGCC	1 cut(s)	363
EheI	GGCGCC	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	2179
FaeI	CATG	4 cut(s)	424, 1163, 1460, 1688
FaqI	GGGAC	1 cut(s)	1196
FatI	CATG	4 cut(s)	420, 1159, 1456, 1684
FblI	GTMKAC	1 cut(s)	1059
FokI	GGATG	6 cut(s)	338, 847, 2101, 2495, 2576, 2635
FriOI	GRGCYC	3 cut(s)	204, 469, 2172
FspBI	CTAG	4 cut(s)	866, 1044, 1053, 1404
GlaI	GCGC	3 cut(s)	153, 363, 1797
GsuI	CTGGAG	2 cut(s)	53, 1398
HaeII	RGCGCY	3 cut(s)	155, 365, 1799
HapII	CCGG	7 cut(s)	463, 474, 1763, 2178, 2326, 2338, 2383
HgaI	GACGC	3 cut(s)	1000, 1362, 2525
HhaI	GCGC	3 cut(s)	154, 364, 1798
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	4 cut(s)	424, 1163, 1460, 1688
Hin6I	GCGC	3 cut(s)	152, 362, 1796
HinP1I	GCGC	3 cut(s)	152, 362, 1796
HincII	GTYRAC	3 cut(s)	522, 1199, 2536
HindII	GTYRAC	3 cut(s)	522, 1199, 2536
HpaI	GTTAAC	1 cut(s)	522
HpaII	CCGG	7 cut(s)	463, 474, 1763, 2178, 2326, 2338, 2383
HphI	GGTGA	4 cut(s)	328, 1456, 1681, 2456
Hpy188III	TCNNGA	8 cut(s)	698, 1070, 1240, 1350, 1377, 1555, 2178, 2344
Hpy99I	CGWCG	3 cut(s)	173, 176, 2123
HpyCH4III	ACNGT	6 cut(s)	577, 1611, 1693, 2283, 2425, 2698
HpyCH4IV	ACGT	7 cut(s)	15, 425, 852, 1062, 1321, 1482, 2415
HpySE526I	ACGT	7 cut(s)	15, 425, 852, 1062, 1321, 1482, 2415
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	4 cut(s)	424, 1163, 1460, 1688
HspAI	GCGC	3 cut(s)	152, 362, 1796
KasI	GGCGCC	1 cut(s)	361
Kpn2I	TCCGGA	1 cut(s)	2177
KspAI	GTTAAC	1 cut(s)	522
KspI	CCGCGG	1 cut(s)	2053
LguI	GCTCTTC	2 cut(s)	104, 245
LmnI	GCTCC	7 cut(s)	43, 183, 200, 1163, 1471, 1570, 2695
Lsp1109I	GCAGC	7 cut(s)	704, 1277, 1480, 1520, 1618, 1822, 1889
LweI	GCATC	2 cut(s)	668, 1736
MabI	ACCWGGT	1 cut(s)	742
MaeI	CTAG	4 cut(s)	866, 1044, 1053, 1404
MaeII	ACGT	7 cut(s)	15, 425, 852, 1062, 1321, 1482, 2415
MaeIII	GTNAC	8 cut(s)	340, 883, 1207, 1637, 1659, 1687, 2077, 2401
MfeI	CAATTG	1 cut(s)	1476
MflI	RGATCY	3 cut(s)	680, 979, 1603
MhlI	GDGCHC	6 cut(s)	204, 469, 571, 791, 2114, 2172
MlsI	TGGCCA	1 cut(s)	608
MluNI	TGGCCA	1 cut(s)	608
Mly113I	GGCGCC	1 cut(s)	362
MlyI	GAGTC	7 cut(s)	83, 86, 137, 524, 1787, 1898, 2190
MmeI	TCCRAC	2 cut(s)	2142, 2717
Mox20I	TGGCCA	1 cut(s)	608
MroI	TCCGGA	1 cut(s)	2177
MroXI	GAANNNNTTC	1 cut(s)	861
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	4 cut(s)	521, 957, 1298, 2511
MslI	CAYNNNNRTG	3 cut(s)	1259, 2326, 2621
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	2 cut(s)	1880, 2052
MspI	CCGG	7 cut(s)	463, 474, 1763, 2178, 2326, 2338, 2383
MspR9I	CCNGG	5 cut(s)	464, 598, 744, 2383, 2595
MunI	CAATTG	1 cut(s)	1476
Mva1269I	GAATGC	1 cut(s)	1550
MvaI	CCWGG	3 cut(s)	598, 744, 2595
MvnI	CGCG	1 cut(s)	2052
NarI	GGCGCC	1 cut(s)	362
NciI	CCSGG	2 cut(s)	464, 2383
NlaIII	CATG	4 cut(s)	424, 1163, 1460, 1688
NlaIV	GGNNCC	5 cut(s)	39, 363, 806, 953, 2691
NmeAIII	GCCGAG	3 cut(s)	183, 1938, 2099
NmuCI	GTSAC	4 cut(s)	1207, 1659, 1687, 2077
NspI	RCATGY	1 cut(s)	1460
NspV	TTCGAA	1 cut(s)	547
OliI	CACNNNNGTG	2 cut(s)	1259, 2326
PaqCI	CACCTGC	1 cut(s)	604
PceI	AGGCCT	1 cut(s)	401
PciSI	GCTCTTC	2 cut(s)	104, 245
PctI	GAATGC	1 cut(s)	1550
PdmI	GAANNNNTTC	1 cut(s)	861
PfeI	GAWTC	5 cut(s)	236, 412, 1436, 1681, 2732
PinAI	ACCGGT	2 cut(s)	473, 2337
PleI	GAGTC	7 cut(s)	83, 85, 136, 523, 1786, 1898, 2189
PluTI	GGCGCC	1 cut(s)	365
PmaCI	CACGTG	1 cut(s)	1322
PmlI	CACGTG	1 cut(s)	1322
PpsI	GAGTC	7 cut(s)	83, 85, 136, 523, 1786, 1898, 2189
Ppu21I	YACGTR	1 cut(s)	1322
PpuMI	RGGWCCY	1 cut(s)	805
PshBI	ATTAAT	1 cut(s)	1298
Psp124BI	GAGCTC	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	805
Psp6I	CCWGG	3 cut(s)	596, 742, 2593
PspCI	CACGTG	1 cut(s)	1322
PspGI	CCWGG	3 cut(s)	596, 742, 2593
PspN4I	GGNNCC	5 cut(s)	39, 363, 806, 953, 2691
PspPI	GGNCC	4 cut(s)	460, 805, 1588, 2146
PspPPI	RGGWCCY	1 cut(s)	805
PsrI	GAACNNNNNNTAC	2 cut(s)	876, 908
PstI	CTGCAG	3 cut(s)	979, 1498, 1600
PsuI	RGATCY	3 cut(s)	680, 979, 1603
PvuII	CAGCTG	1 cut(s)	1880
RsaI	GTAC	2 cut(s)	1695, 2702
RsaNI	GTAC	2 cut(s)	1694, 2701
RseI	CAYNNNNRTG	3 cut(s)	1259, 2326, 2621
SacI	GAGCTC	1 cut(s)	204
SacII	CCGCGG	1 cut(s)	2053
SapI	GCTCTTC	2 cut(s)	104, 245
SaqAI	TTAA	4 cut(s)	521, 957, 1298, 2511
Sau96I	GGNCC	4 cut(s)	460, 805, 1588, 2146
SchI	GAGTC	7 cut(s)	83, 86, 137, 524, 1787, 1898, 2190
ScrFI	CCNGG	5 cut(s)	464, 598, 744, 2383, 2595
SduI	GDGCHC	6 cut(s)	204, 469, 571, 791, 2114, 2172
SexAI	ACCWGGT	1 cut(s)	742
SfaNI	GCATC	2 cut(s)	668, 1736
SfcI	CTRYAG	4 cut(s)	9, 975, 1494, 1596
SfoI	GGCGCC	1 cut(s)	363
Sfr303I	CCGCGG	1 cut(s)	2053
SfuI	TTCGAA	1 cut(s)	547
SgrAI	CRCCGGYG	1 cut(s)	2325
SgrBI	CCGCGG	1 cut(s)	2053
SinI	GGWCC	1 cut(s)	805
SmiMI	CAYNNNNRTG	3 cut(s)	1259, 2326, 2621
SmlI	CTYRAG	4 cut(s)	696, 784, 1747, 2477
SmoI	CTYRAG	4 cut(s)	696, 784, 1747, 2477
SseBI	AGGCCT	1 cut(s)	401
SspDI	GGCGCC	1 cut(s)	361
SspI	AATATT	2 cut(s)	940, 2135
SspMI	CTAG	4 cut(s)	866, 1044, 1053, 1404
SstI	GAGCTC	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	5 cut(s)	462, 596, 742, 2381, 2593
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	6 cut(s)	577, 1611, 1693, 2283, 2425, 2698
TaiI	ACGT	7 cut(s)	18, 428, 855, 1065, 1324, 1485, 2418
TauI	GCSGC	6 cut(s)	2037, 2040, 2043, 2052, 2055, 2311
TfiI	GAWTC	5 cut(s)	236, 412, 1436, 1681, 2732
Tru1I	TTAA	4 cut(s)	521, 957, 1298, 2511
Tru9I	TTAA	4 cut(s)	521, 957, 1298, 2511
TscAI	CASTG	6 cut(s)	916, 1099, 1123, 1313, 1788, 1827
TseFI	GTSAC	4 cut(s)	1207, 1659, 1687, 2077
TseI	GCWGC	7 cut(s)	692, 1265, 1493, 1508, 1631, 1835, 1877
Tsp45I	GTSAC	4 cut(s)	1207, 1659, 1687, 2077
TspDTI	ATGAA	8 cut(s)	74, 828, 837, 1008, 1016, 2139, 2190, 2453
TspGWI	ACGGA	1 cut(s)	2315
TspRI	CASTG	6 cut(s)	916, 1099, 1123, 1313, 1788, 1827
VpaK11BI	GGWCC	1 cut(s)	805
VspI	ATTAAT	1 cut(s)	1298
XagI	CCTNNNNNAGG	1 cut(s)	1750
XapI	RAATTY	6 cut(s)	542, 632, 861, 1235, 1448, 2386
XceI	RCATGY	1 cut(s)	1460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XmiI	GTMKAC	1 cut(s)	1059
XmnI	GAANNNNTTC	1 cut(s)	861
XspI	CTAG	4 cut(s)	866, 1044, 1053, 1404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.