Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011483

Physical Location & Seq

Genomic Coordinates Reverse (-)

64516099 .. 64524811

Gene Structure 8713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG376500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2079 bp

ATGCCTTCTATAGACGTTTCCGATTATGTGCTGGAGGCTCCGAAGAAGGAGAAGAAGATGAAAAAGTCGAAAAAGGAGTCCATAACCGACTCTCCGATTAGTGAGAAGAAGAGCAGTAGCAAGAAGGAGTCAAAGCTGAAGAAGCGGAAAGCGCTGGATATGGAGGCCGACGACGAAGACAGGAGCGAGACCAGCTCCGAGCTCGGCGAGCCTGTCAATTTGAAGCCGAACGGCGATTCTTCGGCGGAGAAGAGCAAGAAGAAATCGAAGAAGGCCAAGGTGGAGGAGGAGGAGGAGGAAGAGGAGAAGGTTGAGGTGAAGGAGGATGATCCTAATGCCGTAACCAAGTTTCGGATTTCGGCGCCGTTGAGGGCTAAGCTGAAGGAGAAGGGGATCGAGGCCTTGTTTACGATTCAGGCCATGACGTTCGACACCATTTTGGACGGGGCGGACTTGGTGGGCCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCTTTTGTGTTGCCTATATTGGAGTCGTTAACAAATGGTTCTGCGAAAGAATTTCGAAAGACTGGATACGGCAGAGCACCGACTGTTATTGTTCTTTTACCCACCAGGGAGTTGGCCAAGCAGGTGTTTGTGGACTTTGAATTTTATGGTGGTGCTGTGGGGTTAGCATCGTGTTGTGTATATGGTGGATCTCCTTATGCAGCTCAAGAATATAAGTTGAAGAGAGGGGTTGATGTCATTGTGGGAACACCTGGTCGTATCAAGGATCATATTGAGAGGGGGAATATAGACTTGAGCACTTTGAAGTTTCGGGTCCTTGATGAAGCTGATGAAATGCTGAGGATGGGTTTTGTTGATGACGTTGAACAAATTCTAGGCAAGGTCAAAGATGTAACTAAAGTTCAAACGCTTCTCTTCAGTGCAACCTTACCTTCTTGGGTGCAAAATATTTCCAAAAGGTTCCTTAAATCAGATAAGAAAACTGCAGATCTGGTTGGTAATGAAAAGATGAAGGCCAGCGTCAATGTTAGGCATATTGTTCTTCCCTGCTCTAGTTCAGCTAGAGTAGACGTTATTCCTGATATCATTCGTTGTTATAGCAGTGGAGGTCGCACTATTATTTTCACTGAAACAAAGGATTGTGCTTCTGAGCTTTCTGAGAGGTTGCATGGAGCAAGACCTTTGCACGGGGACATACAGCAAGGTCAACGGGAGGTCACACTTGCAGGTTTCAGGTCTGGCAAATTCTCGACATTAGTAGCCACAAATGTGGCAGCTCGTGGACTGGATATCAATGATGTTCAATTAATTATTCAGTGTGAACCTCCACGTGATGTAGAAGACTATATCCATCGATCTGGACGCACAGGGAGAGCAGGCAATTCTGGAGTTGCTGTAATGCTTTATGACCCTAGAAAGTCAAACATATCAAAGATCGAAAGAGAATCTGGGGTGAAATTTGAGCATGTTTCTGCTCCTCAGCCAATTGACGTTGCCAAAGCTGCAGGTCTTAGTGCAGCAGAAATGATTACTAATGTCTCTGATAGCGTAATTCCTGCATTCAAGAGTGTTGCTGAGGAGCTTCTAAACACCTCAGGCCTATCTGCAGTAGATCTACTGTCAAAGGCTCTTGCTAAGGCTGCTGGCTACACCGATGTAAAGAAGAGGTCACTTCTGAGTTCTATGGAGAACCATGTCACCGTACTGCTTGAAGCTGGAAAGCCCATTTACACAGCATCTTTTGCTTATTCGGCCTTGAGGAGGTTCTTGCCGGAGGAGAAGGTCGAGTCAGTGAAGGGTATGGCGCTAACAACTGATGGAAAGGGTGCAGTGTTTGATGTAGCTGCTGAAGATTTGGATATGTTTCTTACTGGTTCGCAAAATGCAGCTGGTATCAGCATACAGGTCTTGGACTCTTTGCCGAGTTTACAAGAAAAAGAAGCAAGGGGAGGAAGATTTGGCGGTGGTGGCCGTGGTGGTAGTAGGTTTGGTGGAAGAGGAGGTGGCAGGGGTGGTGGTGGTTTCTCTAATGGAAGAAATGATAGGTTTGGTGGCGGCAGAGGCCGCGGCAACTACAACAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

692

Amino Acids

75.0

Weight (kDa)

9.0

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	137 - 313	6.8e-44	DEAD/DEAH box helicase
Helicase_C	PF00271	353 - 457	1.9e-27	Helicase conserved C-terminal domain
DD_DDX21-DDX50	PF26142	491 - 543	1.4e-18	DDX21/DDX50 dimerisation domain
GUCT	PF08152	546 - 641	1.8e-28	GUCT (NUC152) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62190
fragaria_vesca	FvH4_7g28410
malus_domestica	MD01G1187800.v1.1 MD07G1259900.v1.1 MD07G1260300.v1.1
prunus_persica	Prupe.2G284200_v2.0.a1 Prupe.2G284200_v2.0.a1 Prupe.2G284200_v2.0.a1
pyrus_communis	pycom07g23330
rosa_chinensis	RchiOBHm_Chr1g0375371
rosa_laevigata	RLG00000026667
rosa_multiflora	Rmu_sc0000554.1_g000041 Rmu_ssc0000106.1_g000003
rosa_roxburghii	Rroxscaffold_4G00282810
rosa_rugosa	Rorug01G0390800
rosa_samantha	Rh1AG401100 Rh1BG363200 Rh1CG376500 Rh1DG394000
rosa_wichuraiana	Rw1G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	604
Acc36I	ACCTGC	3 cut(s)	604, 1208, 1487
AccB1I	GGYRCC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	1059
AccII	CGCG	1 cut(s)	2058
AciI	CCGC	7 cut(s)	145, 245, 449, 1953, 2046, 2056, 2058
AclWI	GGATC	4 cut(s)	323, 401, 688, 765
AcoI	YGGCCR	2 cut(s)	606, 1960
AcsI	RAATTY	5 cut(s)	542, 632, 861, 1235, 1448
AcuI	CTGAAG	4 cut(s)	158, 401, 892, 1860
AcvI	CACGTG	1 cut(s)	1322
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	1 cut(s)	1695
AfeI	AGCGCT	1 cut(s)	153
AfiI	CCNNNNNNNGG	3 cut(s)	351, 1178, 1752
AgeI	ACCGGT	1 cut(s)	473
AgsI	TTSAA	9 cut(s)	223, 632, 712, 796, 857, 896, 1295, 1555, 1703
AjnI	CCWGG	2 cut(s)	596, 742
AleI	CACNNNNGTG	1 cut(s)	1259
Alw21I	GWGCWC	3 cut(s)	204, 571, 791
Alw26I	GTCTC	2 cut(s)	182, 1534
AlwI	GGATC	4 cut(s)	323, 401, 688, 765
Aor51HI	AGCGCT	1 cut(s)	153
ApeKI	GCWGC	7 cut(s)	692, 1265, 1493, 1508, 1631, 1835, 1877
ApoI	RAATTY	5 cut(s)	542, 632, 861, 1235, 1448
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AseI	ATTAAT	1 cut(s)	1298
AsiGI	ACCGGT	1 cut(s)	473
Asp700I	GAANNNNTTC	1 cut(s)	861
AspLEI	GCGC	3 cut(s)	154, 364, 1798
AspS9I	GGNCC	2 cut(s)	460, 805
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	3 cut(s)	328, 1456, 1681
AsuII	TTCGAA	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	805
AxyI	CCTNAGG	1 cut(s)	1585
BalI	TGGCCA	1 cut(s)	608
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	204, 469
BauI	CACGAG	1 cut(s)	1269
BbrPI	CACGTG	1 cut(s)	1322
BbsI	GAAGAC	2 cut(s)	183, 1338
Bbv12I	GWGCWC	3 cut(s)	204, 571, 791
BbvCI	CCTCAGC	3 cut(s)	830, 1470, 1566
BbvI	GCAGC	7 cut(s)	704, 1277, 1480, 1520, 1618, 1822, 1889
BccI	CCATC	4 cut(s)	829, 1350, 1802, 2067
BceAI	ACGGC	5 cut(s)	247, 323, 349, 577, 1947
BciT130I	CCWGG	2 cut(s)	598, 744
BciVI	GTATCC	1 cut(s)	551
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	2 cut(s)	182, 1534
BfaI	CTAG	4 cut(s)	866, 1044, 1053, 1404
BfmI	CTRYAG	4 cut(s)	9, 975, 1494, 1596
BfoI	RGCGCY	3 cut(s)	155, 365, 1799
BfuAI	ACCTGC	3 cut(s)	604, 1208, 1487
BfuI	GTATCC	1 cut(s)	551
BglII	AGATCT	2 cut(s)	979, 1603
BlpI	GCTNAGC	1 cut(s)	375
Bme1390I	CCNGG	3 cut(s)	464, 598, 744
Bme18I	GGWCC	1 cut(s)	805
BmgT120I	GGNCC	2 cut(s)	460, 805
BmiI	GGNNCC	4 cut(s)	39, 363, 806, 953
BmrFI	CCNGG	3 cut(s)	464, 598, 744
BmsI	GCATC	2 cut(s)	668, 1736
BpiI	GAAGAC	2 cut(s)	183, 1338
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	2 cut(s)	53, 1398
Bpu10I	CCTNAGC	4 cut(s)	830, 1470, 1566, 1626
Bpu1102I	GCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	547
BpuEI	CTTGAG	3 cut(s)	681, 805, 1768
BpuMI	CCSGG	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	1345
BsaAI	YACGTR	1 cut(s)	1322
BsaHI	GRCGYC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	4 cut(s)	276, 597, 1963, 2056
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 1371, 1401
Bsc4I	CCNNNNNNNGG	3 cut(s)	351, 1178, 1752
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	3 cut(s)	559, 1281, 1867
Bse21I	CCTNAGG	1 cut(s)	1585
BseBI	CCWGG	2 cut(s)	598, 744
BseCI	ATCGAT	1 cut(s)	1345
BseDI	CCNNGG	4 cut(s)	276, 597, 1963, 2056
BseGI	GGATG	2 cut(s)	331, 840
BseLI	CCNNNNNNNGG	3 cut(s)	351, 1178, 1752
BseMII	CTCAG	7 cut(s)	821, 1131, 1140, 1484, 1557, 1599, 1658
BseNI	ACTGG	3 cut(s)	559, 1281, 1867
BseXI	GCAGC	7 cut(s)	704, 1277, 1480, 1520, 1618, 1822, 1889
BsgI	GTGCAG	2 cut(s)	1527, 1839
Bsh1236I	CGCG	1 cut(s)	2058
BshNI	GGYRCC	1 cut(s)	361
BshTI	ACCGGT	1 cut(s)	473
BshVI	ATCGAT	1 cut(s)	1345
BsiHKAI	GWGCWC	3 cut(s)	204, 571, 791
BsiSI	CCGG	3 cut(s)	463, 474, 1763
BslFI	GGGAC	1 cut(s)	1196
BslI	CCNNNNNNNGG	3 cut(s)	351, 1178, 1752
BsmAI	GTCTC	2 cut(s)	182, 1534
BsmFI	GGGAC	1 cut(s)	1196
BsmI	GAATGC	1 cut(s)	1550
Bso31I	GGTCTC	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	547
Bsp1286I	GDGCHC	4 cut(s)	204, 469, 571, 791
Bsp143I	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
Bsp1720I	GCTNAGC	1 cut(s)	375
BspACI	CCGC	7 cut(s)	145, 245, 449, 1953, 2046, 2056, 2058
BspCNI	CTCAG	7 cut(s)	822, 1132, 1141, 1483, 1558, 1598, 1659
BspDI	ATCGAT	1 cut(s)	1345
BspFNI	CGCG	1 cut(s)	2058
BspLI	GGNNCC	4 cut(s)	39, 363, 806, 953
BspMAI	CTGCAG	3 cut(s)	979, 1498, 1600
BspMI	ACCTGC	3 cut(s)	604, 1208, 1487
BspPI	GGATC	4 cut(s)	323, 401, 688, 765
BspQI	GCTCTTC	2 cut(s)	104, 245
BspT104I	TTCGAA	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	473
BsrI	ACTGG	3 cut(s)	559, 1281, 1867
BssAI	RCCGGY	1 cut(s)	473
BssECI	CCNNGG	4 cut(s)	276, 597, 1963, 2056
BssMI	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
BssNI	GRCGYC	1 cut(s)	362
BssSI	CACGAG	1 cut(s)	1269
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	1269
Bst2UI	CCWGG	2 cut(s)	598, 744
Bst4CI	ACNGT	3 cut(s)	577, 1611, 1693
Bst6I	CTCTTC	7 cut(s)	104, 245, 294, 707, 911, 1649, 1981
BstACI	GRCGYC	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	1733
BstBAI	YACGTR	1 cut(s)	1322
BstBI	TTCGAA	1 cut(s)	547
BstC8I	GCNNGC	5 cut(s)	209, 469, 1009, 1369, 1636
BstDSI	CCRYGG	2 cut(s)	1963, 2056
BstENI	CCTNNNNNAGG	1 cut(s)	1750
BstF5I	GGATG	2 cut(s)	331, 840
BstFNI	CGCG	1 cut(s)	2058
BstH2I	RGCGCY	3 cut(s)	155, 365, 1799
BstHHI	GCGC	3 cut(s)	154, 364, 1798
BstKTI	GATC	8 cut(s)	331, 396, 683, 760, 982, 1349, 1428, 1606
BstMAI	GTCTC	2 cut(s)	182, 1534
BstMBI	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
BstNI	CCWGG	2 cut(s)	598, 744
BstNSI	RCATGY	1 cut(s)	1460
BstSCI	CCNGG	3 cut(s)	462, 596, 742
BstSFI	CTRYAG	4 cut(s)	9, 975, 1494, 1596
BstUI	CGCG	1 cut(s)	2058
BstV1I	GCAGC	7 cut(s)	704, 1277, 1480, 1520, 1618, 1822, 1889
BstV2I	GAAGAC	2 cut(s)	183, 1338
BstX2I	RGATCY	3 cut(s)	680, 979, 1603
BstXI	CCANNNNNNTGG	3 cut(s)	604, 1261, 1349
BstYI	RGATCY	3 cut(s)	680, 979, 1603
Bsu15I	ATCGAT	1 cut(s)	1345
Bsu36I	CCTNAGG	1 cut(s)	1585
BsuI	GTATCC	1 cut(s)	551
BsuTUI	ATCGAT	1 cut(s)	1345
BtgI	CCRYGG	2 cut(s)	1963, 2056
BtsCI	GGATG	2 cut(s)	331, 840
BtsI	GCAGTG	2 cut(s)	1099, 1827
BtsIMutI	CAGTG	6 cut(s)	916, 1099, 1116, 1313, 1788, 1827
BveI	ACCTGC	3 cut(s)	604, 1208, 1487
Cac8I	GCNNGC	5 cut(s)	209, 469, 1009, 1369, 1636
CfoI	GCGC	3 cut(s)	154, 364, 1798
Cfr10I	RCCGGY	1 cut(s)	473
Cfr13I	GGNCC	2 cut(s)	460, 805
Cfr42I	CCGCGG	1 cut(s)	2059
ClaI	ATCGAT	1 cut(s)	1345
CseI	GACGC	2 cut(s)	1000, 1362
CsiI	ACCWGGT	1 cut(s)	742
Csp6I	GTAC	1 cut(s)	1694
CspAI	ACCGGT	1 cut(s)	473
CviAII	CATG	4 cut(s)	421, 1160, 1457, 1685
CviQI	GTAC	1 cut(s)	1694
DinI	GGCGCC	1 cut(s)	363
DpnI	GATC	8 cut(s)	330, 395, 682, 759, 981, 1348, 1427, 1605
DpnII	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
EaeI	YGGCCR	2 cut(s)	606, 1960
Eam1104I	CTCTTC	7 cut(s)	104, 245, 294, 707, 911, 1649, 1981
EarI	CTCTTC	7 cut(s)	104, 245, 294, 707, 911, 1649, 1981
EciI	GGCGGA	2 cut(s)	260, 464
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	2 cut(s)	401, 1590
Eco24I	GRGCYC	2 cut(s)	204, 469
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	2 cut(s)	1075, 1282
Eco47I	GGWCC	1 cut(s)	805
Eco47III	AGCGCT	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	4 cut(s)	158, 401, 892, 1860
Eco72I	CACGTG	1 cut(s)	1322
Eco81I	CCTNAGG	1 cut(s)	1585
EcoICRI	GAGCTC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	1750
EcoO109I	RGGNCCY	1 cut(s)	805
EcoRII	CCWGG	2 cut(s)	596, 742
EcoRV	GATATC	2 cut(s)	1075, 1282
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	204, 469
EgeI	GGCGCC	1 cut(s)	363
EheI	GGCGCC	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	4 cut(s)	424, 1163, 1460, 1688
FaqI	GGGAC	1 cut(s)	1196
FatI	CATG	4 cut(s)	420, 1159, 1456, 1684
FblI	GTMKAC	1 cut(s)	1059
FokI	GGATG	2 cut(s)	338, 847
FriOI	GRGCYC	2 cut(s)	204, 469
FspBI	CTAG	4 cut(s)	866, 1044, 1053, 1404
GlaI	GCGC	3 cut(s)	153, 363, 1797
GsuI	CTGGAG	2 cut(s)	53, 1398
HaeII	RGCGCY	3 cut(s)	155, 365, 1799
HapII	CCGG	3 cut(s)	463, 474, 1763
HgaI	GACGC	2 cut(s)	1000, 1362
HhaI	GCGC	3 cut(s)	154, 364, 1798
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	4 cut(s)	424, 1163, 1460, 1688
Hin6I	GCGC	3 cut(s)	152, 362, 1796
HinP1I	GCGC	3 cut(s)	152, 362, 1796
HincII	GTYRAC	2 cut(s)	522, 1199
HindII	GTYRAC	2 cut(s)	522, 1199
HinfI	GANTC	9 cut(s)	77, 89, 128, 236, 412, 515, 1436, 1778, 1904
HpaI	GTTAAC	1 cut(s)	522
HpaII	CCGG	3 cut(s)	463, 474, 1763
HphI	GGTGA	3 cut(s)	328, 1456, 1681
Hpy166II	GTNNAC	8 cut(s)	408, 522, 625, 1060, 1199, 1274, 1313, 1919
Hpy188III	TCNNGA	6 cut(s)	698, 1070, 1240, 1350, 1377, 1555
Hpy8I	GTNNAC	8 cut(s)	408, 522, 625, 1060, 1199, 1274, 1313, 1919
Hpy99I	CGWCG	2 cut(s)	173, 176
HpyCH4III	ACNGT	3 cut(s)	577, 1611, 1693
HpyCH4IV	ACGT	6 cut(s)	15, 425, 852, 1062, 1321, 1482
HpySE526I	ACGT	6 cut(s)	15, 425, 852, 1062, 1321, 1482
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	4 cut(s)	424, 1163, 1460, 1688
HspAI	GCGC	3 cut(s)	152, 362, 1796
KasI	GGCGCC	1 cut(s)	361
KspAI	GTTAAC	1 cut(s)	522
KspI	CCGCGG	1 cut(s)	2059
Kzo9I	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
LguI	GCTCTTC	2 cut(s)	104, 245
LmnI	GCTCC	6 cut(s)	43, 183, 200, 1163, 1471, 1570
Lsp1109I	GCAGC	7 cut(s)	704, 1277, 1480, 1520, 1618, 1822, 1889
LweI	GCATC	2 cut(s)	668, 1736
MabI	ACCWGGT	1 cut(s)	742
MaeI	CTAG	4 cut(s)	866, 1044, 1053, 1404
MaeII	ACGT	6 cut(s)	15, 425, 852, 1062, 1321, 1482
MaeIII	GTNAC	5 cut(s)	340, 883, 1207, 1659, 1687
MalI	GATC	8 cut(s)	330, 395, 682, 759, 981, 1348, 1427, 1605
MboI	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
MfeI	CAATTG	1 cut(s)	1476
MflI	RGATCY	3 cut(s)	680, 979, 1603
MhlI	GDGCHC	4 cut(s)	204, 469, 571, 791
MlsI	TGGCCA	1 cut(s)	608
MluNI	TGGCCA	1 cut(s)	608
Mly113I	GGCGCC	1 cut(s)	362
MlyI	GAGTC	6 cut(s)	83, 86, 137, 524, 1787, 1898
Mox20I	TGGCCA	1 cut(s)	608
MroXI	GAANNNNTTC	1 cut(s)	861
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	3 cut(s)	521, 957, 1298
MslI	CAYNNNNRTG	1 cut(s)	1259
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	2 cut(s)	1880, 2058
MspI	CCGG	3 cut(s)	463, 474, 1763
MspR9I	CCNGG	3 cut(s)	464, 598, 744
MunI	CAATTG	1 cut(s)	1476
Mva1269I	GAATGC	1 cut(s)	1550
MvaI	CCWGG	2 cut(s)	598, 744
MvnI	CGCG	1 cut(s)	2058
NarI	GGCGCC	1 cut(s)	362
NciI	CCSGG	1 cut(s)	464
NdeII	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
NlaIII	CATG	4 cut(s)	424, 1163, 1460, 1688
NlaIV	GGNNCC	4 cut(s)	39, 363, 806, 953
NmeAIII	GCCGAG	2 cut(s)	183, 1938
NmuCI	GTSAC	3 cut(s)	1207, 1659, 1687
NspI	RCATGY	1 cut(s)	1460
NspV	TTCGAA	1 cut(s)	547
OliI	CACNNNNGTG	1 cut(s)	1259
PaqCI	CACCTGC	1 cut(s)	604
PceI	AGGCCT	2 cut(s)	401, 1590
PciSI	GCTCTTC	2 cut(s)	104, 245
PctI	GAATGC	1 cut(s)	1550
PdmI	GAANNNNTTC	1 cut(s)	861
PfeI	GAWTC	3 cut(s)	236, 412, 1436
PinAI	ACCGGT	1 cut(s)	473
PleI	GAGTC	6 cut(s)	83, 85, 136, 523, 1786, 1898
PluTI	GGCGCC	1 cut(s)	365
PmaCI	CACGTG	1 cut(s)	1322
PmlI	CACGTG	1 cut(s)	1322
PpsI	GAGTC	6 cut(s)	83, 85, 136, 523, 1786, 1898
Ppu21I	YACGTR	1 cut(s)	1322
PpuMI	RGGWCCY	1 cut(s)	805
PshBI	ATTAAT	1 cut(s)	1298
Psp124BI	GAGCTC	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	805
Psp6I	CCWGG	2 cut(s)	596, 742
PspCI	CACGTG	1 cut(s)	1322
PspGI	CCWGG	2 cut(s)	596, 742
PspN4I	GGNNCC	4 cut(s)	39, 363, 806, 953
PspPI	GGNCC	2 cut(s)	460, 805
PspPPI	RGGWCCY	1 cut(s)	805
PsrI	GAACNNNNNNTAC	2 cut(s)	876, 908
PstI	CTGCAG	3 cut(s)	979, 1498, 1600
PsuI	RGATCY	3 cut(s)	680, 979, 1603
PvuII	CAGCTG	1 cut(s)	1880
RsaI	GTAC	1 cut(s)	1695
RsaNI	GTAC	1 cut(s)	1694
RseI	CAYNNNNRTG	1 cut(s)	1259
SacI	GAGCTC	1 cut(s)	204
SacII	CCGCGG	1 cut(s)	2059
SapI	GCTCTTC	2 cut(s)	104, 245
SaqAI	TTAA	3 cut(s)	521, 957, 1298
Sau3AI	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
Sau96I	GGNCC	2 cut(s)	460, 805
SchI	GAGTC	6 cut(s)	83, 86, 137, 524, 1787, 1898
ScrFI	CCNGG	3 cut(s)	464, 598, 744
SduI	GDGCHC	4 cut(s)	204, 469, 571, 791
SexAI	ACCWGGT	1 cut(s)	742
SfaNI	GCATC	2 cut(s)	668, 1736
SfcI	CTRYAG	4 cut(s)	9, 975, 1494, 1596
SfoI	GGCGCC	1 cut(s)	363
Sfr303I	CCGCGG	1 cut(s)	2059
SfuI	TTCGAA	1 cut(s)	547
SgrBI	CCGCGG	1 cut(s)	2059
SinI	GGWCC	1 cut(s)	805
SmiMI	CAYNNNNRTG	1 cut(s)	1259
SmlI	CTYRAG	3 cut(s)	696, 784, 1747
SmoI	CTYRAG	3 cut(s)	696, 784, 1747
SseBI	AGGCCT	2 cut(s)	401, 1590
SsiI	CCGC	7 cut(s)	145, 245, 449, 1953, 2046, 2056, 2058
SspDI	GGCGCC	1 cut(s)	361
SspI	AATATT	1 cut(s)	940
SspMI	CTAG	4 cut(s)	866, 1044, 1053, 1404
SstI	GAGCTC	1 cut(s)	204
StuI	AGGCCT	2 cut(s)	401, 1590
StyD4I	CCNGG	3 cut(s)	462, 596, 742
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	577, 1611, 1693
TaiI	ACGT	6 cut(s)	18, 428, 855, 1065, 1324, 1485
TaqI	TCGA	9 cut(s)	68, 266, 396, 429, 547, 1241, 1345, 1428, 1776
TauI	GCSGC	3 cut(s)	2049, 2058, 2061
TfiI	GAWTC	3 cut(s)	236, 412, 1436
Tru1I	TTAA	3 cut(s)	521, 957, 1298
Tru9I	TTAA	3 cut(s)	521, 957, 1298
TscAI	CASTG	6 cut(s)	916, 1099, 1123, 1313, 1788, 1827
TseFI	GTSAC	3 cut(s)	1207, 1659, 1687
TseI	GCWGC	7 cut(s)	692, 1265, 1493, 1508, 1631, 1835, 1877
Tsp45I	GTSAC	3 cut(s)	1207, 1659, 1687
TspDTI	ATGAA	5 cut(s)	74, 828, 837, 1008, 1016
TspRI	CASTG	6 cut(s)	916, 1099, 1123, 1313, 1788, 1827
VpaK11BI	GGWCC	1 cut(s)	805
VspI	ATTAAT	1 cut(s)	1298
XagI	CCTNNNNNAGG	1 cut(s)	1750
XapI	RAATTY	5 cut(s)	542, 632, 861, 1235, 1448
XceI	RCATGY	1 cut(s)	1460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XmiI	GTMKAC	1 cut(s)	1059
XmnI	GAANNNNTTC	1 cut(s)	861
XspI	CTAG	4 cut(s)	866, 1044, 1053, 1404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.