Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011483

Physical Location & Seq

Genomic Coordinates Reverse (-)

61184353 .. 61189200

Gene Structure 4848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG394000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1734 bp

ATGCCTTCTATAGACGTTTCCGATTATGTGCTGGAGGCTCCGAAGAAGGAGAAGAAGATGAAAAAGTCGAAAAAGGAGTCCATAACCGACTCTCCGATTAGTGAGAAGAAGAGCAGTAGCAAGAAGGAGTCAAAGCTGAAGAAGCGGAAAGCGCTGGATATGGAGGCCGACGACGAAGACAGGAGCGAGACCAGCTCCGAGCTCGGCGAGCCTGTCAATTTGAAGCCGAACGGCGATTCTTCGGCGGAGAAGAGCAAGAAGAAATCGAAGAAGGCCAAGGTGGAGGAGGAGGAGGAGGAAGAGGAGAAGGTTGAGGTGAAGGAGGATGATCCTAATGCCGTAACCAAGTTTCGGATTTCGGCGCCGTTGAGGGCTAAGCTGAAGGAGAAGGGGATCGAGGCCTTGTTTACGATTCAGGCCATGACGTTCGACACCATTTTGGACGGGGCGGACTTGGTGGGCCGGGCTCGCACCGGTCAGGGTAAAACTCTGGCTTTTGTGTTGCCTATATTGGAGTCGTTAACAAATGGTTCTGCGAAAGAATTTCGAAAGACTGGATACGGCAGAGCACCGACTGTTATTGTTCTTTTACCCACCAGGGAGTTGGCCAAGCAGGTGTTTGTGGACTTTGAATTTTATGGTGGTGCTGTGGGGTTAGCATCGTGTTGTGTATATGGTGGATCTCCTTATGCAGCTCAAGAATATAAGTTGAAGAGAGGGGTTGATGTCATTGTGGGAACACCTGGTCGTATCAAGGATCATATTGAGAGGGGGAATATAGACTTGAGCACTTTGAAGTTTCGGGTCCTTGATGAAGCTGATGAAATGCTGAGGATGGGTTTTGTTGATGACGTTGAACAAATTCTAGGCAAGGTCAAAGATGTAACTAAAGTTCAAACGCTTCTCTTCAGTGCAACCTTACCTTCTTGGGTGCAAAATATTTCCAAAAGGTTCCTTAAATCAGATAAGAAAACTGCAGATCTGGTTGGTAATGAAAAGATGAAGGCCAGCGTCAATGTTAGGCATATTGTTCTTCCCTGCTCTAGTTCAGCTAGAGTAGACGTTATTCCTGATATCATTCGTTGTTATAGCAGTGGAGGTCGCACTATTATTTTCACTGAAACAAAGGATTGTGCTTCTGAGCTTTCTGAGAGGTTGCATGGAGCAAGACCTTTGCACGGGGACATACAGCAAGGTCAACGGGAGGTCACACTTGCAGGTTTCAGGTCTGGCAAATTCTCGACATTAGTAGCCACAAATGTGGCAGCTCGTGGACTGGATATCAATGATGTTCAATTAATTATTCAGTGTGAACCTCCACGTGATGTAGAAGACTATATCCATCGATCTGGACGCACAGGGAGAGCAGGCAATTCTGGAGTTGCTGTAATGCTTTATGACCCTAGAAAGTCAAACATATCAAAGATCGAAAGAGAATCTGGGGTGAAATTTGAGCATGTTTCTGCTCCTCAGCCAATTGACGTTGCCAAAGCTGCAGGTCTTAGTGCAGCAGAAATGATTACTAATGTCTCTGATAGCGTAATTCCTGCATTCAAGAGTGTTGCTGAGGAGCTTCTAAACACCTCAGGCCTATCTGCAGTAGATCTACTGTCAAAGGCTCTTGCTAAGGCTGCTGGCTACACCGATGTAAAGAAGAGGTCACTTCTGAGTTCTATGGAGAACCATGTCACCGTACTGCTTGAAGCTGGAAAGCCCATTTACACAGCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

577

Amino Acids

63.03

Weight (kDa)

8.67

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	137 - 313	4.8e-44	DEAD/DEAH box helicase
Helicase_C	PF00271	353 - 457	1.4e-27	Helicase conserved C-terminal domain
DD_DDX21-DDX50	PF26142	491 - 543	1.1e-18	DDX21/DDX50 dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62190
fragaria_vesca	FvH4_7g28410
malus_domestica	MD01G1187800.v1.1 MD07G1259900.v1.1 MD07G1260300.v1.1
prunus_persica	Prupe.2G284200_v2.0.a1 Prupe.2G284200_v2.0.a1 Prupe.2G284200_v2.0.a1
pyrus_communis	pycom07g23330
rosa_chinensis	RchiOBHm_Chr1g0375371
rosa_laevigata	RLG00000026667
rosa_multiflora	Rmu_sc0000554.1_g000041 Rmu_ssc0000106.1_g000003
rosa_roxburghii	Rroxscaffold_4G00282810
rosa_rugosa	Rorug01G0390800
rosa_samantha	Rh1AG401100 Rh1BG363200 Rh1CG376500 Rh1DG394000
rosa_wichuraiana	Rw1G035610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	604
Acc36I	ACCTGC	3 cut(s)	604, 1208, 1487
AccB1I	GGYRCC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	1059
AciI	CCGC	3 cut(s)	145, 245, 449
AclWI	GGATC	4 cut(s)	323, 401, 688, 765
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	5 cut(s)	542, 632, 861, 1235, 1448
AcuI	CTGAAG	3 cut(s)	158, 401, 892
AcvI	CACGTG	1 cut(s)	1322
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	1 cut(s)	1695
AfeI	AGCGCT	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	351, 1178
AgeI	ACCGGT	1 cut(s)	473
AgsI	TTSAA	9 cut(s)	223, 632, 712, 796, 857, 896, 1295, 1555, 1703
AjnI	CCWGG	2 cut(s)	596, 742
AleI	CACNNNNGTG	1 cut(s)	1259
Alw21I	GWGCWC	3 cut(s)	204, 571, 791
Alw26I	GTCTC	2 cut(s)	182, 1534
AlwI	GGATC	4 cut(s)	323, 401, 688, 765
Aor51HI	AGCGCT	1 cut(s)	153
AoxI	GGCC	8 cut(s)	165, 273, 399, 417, 460, 606, 1005, 1588
ApeKI	GCWGC	5 cut(s)	692, 1265, 1493, 1508, 1631
ApoI	RAATTY	5 cut(s)	542, 632, 861, 1235, 1448
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AseI	ATTAAT	1 cut(s)	1298
AsiGI	ACCGGT	1 cut(s)	473
Asp700I	GAANNNNTTC	1 cut(s)	861
AspLEI	GCGC	2 cut(s)	154, 364
AspS9I	GGNCC	2 cut(s)	460, 805
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	3 cut(s)	328, 1456, 1681
AsuII	TTCGAA	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	805
AxyI	CCTNAGG	1 cut(s)	1585
BalI	TGGCCA	1 cut(s)	608
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	204, 469
BauI	CACGAG	1 cut(s)	1269
BbrPI	CACGTG	1 cut(s)	1322
BbsI	GAAGAC	2 cut(s)	183, 1338
Bbv12I	GWGCWC	3 cut(s)	204, 571, 791
BbvCI	CCTCAGC	3 cut(s)	830, 1470, 1566
BbvI	GCAGC	5 cut(s)	704, 1277, 1480, 1520, 1618
BccI	CCATC	2 cut(s)	829, 1350
BceAI	ACGGC	4 cut(s)	247, 323, 349, 577
BciT130I	CCWGG	2 cut(s)	598, 744
BciVI	GTATCC	1 cut(s)	551
BcnI	CCSGG	1 cut(s)	464
BcoDI	GTCTC	2 cut(s)	182, 1534
BfaI	CTAG	4 cut(s)	866, 1044, 1053, 1404
BfmI	CTRYAG	4 cut(s)	9, 975, 1494, 1596
BfoI	RGCGCY	2 cut(s)	155, 365
BfuAI	ACCTGC	3 cut(s)	604, 1208, 1487
BfuI	GTATCC	1 cut(s)	551
BglII	AGATCT	2 cut(s)	979, 1603
BisI	GCNGC	5 cut(s)	693, 1266, 1494, 1509, 1632
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	5 cut(s)	694, 1267, 1495, 1510, 1633
Bme1390I	CCNGG	3 cut(s)	464, 598, 744
Bme18I	GGWCC	1 cut(s)	805
BmgT120I	GGNCC	2 cut(s)	460, 805
BmiI	GGNNCC	4 cut(s)	39, 363, 806, 953
BmrFI	CCNGG	3 cut(s)	464, 598, 744
BmsI	GCATC	1 cut(s)	668
BpiI	GAAGAC	2 cut(s)	183, 1338
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	2 cut(s)	53, 1398
Bpu10I	CCTNAGC	4 cut(s)	830, 1470, 1566, 1626
Bpu1102I	GCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	547
BpuEI	CTTGAG	2 cut(s)	681, 805
BpuMI	CCSGG	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	1345
BsaAI	YACGTR	1 cut(s)	1322
BsaHI	GRCGYC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	276, 597
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 1371, 1401
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 1178
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	2 cut(s)	559, 1281
Bse21I	CCTNAGG	1 cut(s)	1585
BseBI	CCWGG	2 cut(s)	598, 744
BseCI	ATCGAT	1 cut(s)	1345
BseDI	CCNNGG	2 cut(s)	276, 597
BseGI	GGATG	2 cut(s)	331, 840
BseLI	CCNNNNNNNGG	2 cut(s)	351, 1178
BseMII	CTCAG	7 cut(s)	821, 1131, 1140, 1484, 1557, 1599, 1658
BseNI	ACTGG	2 cut(s)	559, 1281
BseRI	GAGGAG	7 cut(s)	299, 302, 305, 308, 317, 1458, 1583
BseXI	GCAGC	5 cut(s)	704, 1277, 1480, 1520, 1618
BsgI	GTGCAG	1 cut(s)	1527
BshFI	GGCC	8 cut(s)	167, 275, 401, 419, 462, 608, 1007, 1590
BshNI	GGYRCC	1 cut(s)	361
BshTI	ACCGGT	1 cut(s)	473
BshVI	ATCGAT	1 cut(s)	1345
BsiHKAI	GWGCWC	3 cut(s)	204, 571, 791
BsiSI	CCGG	2 cut(s)	463, 474
BslFI	GGGAC	1 cut(s)	1196
BslI	CCNNNNNNNGG	2 cut(s)	351, 1178
BsmAI	GTCTC	2 cut(s)	182, 1534
BsmFI	GGGAC	1 cut(s)	1196
BsmI	GAATGC	1 cut(s)	1550
BsnI	GGCC	8 cut(s)	167, 275, 401, 419, 462, 608, 1007, 1590
Bso31I	GGTCTC	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	547
Bsp1286I	GDGCHC	4 cut(s)	204, 469, 571, 791
Bsp143I	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
Bsp1720I	GCTNAGC	1 cut(s)	375
BspACI	CCGC	3 cut(s)	145, 245, 449
BspANI	GGCC	8 cut(s)	167, 275, 401, 419, 462, 608, 1007, 1590
BspCNI	CTCAG	7 cut(s)	822, 1132, 1141, 1483, 1558, 1598, 1659
BspDI	ATCGAT	1 cut(s)	1345
BspLI	GGNNCC	4 cut(s)	39, 363, 806, 953
BspMAI	CTGCAG	3 cut(s)	979, 1498, 1600
BspMI	ACCTGC	3 cut(s)	604, 1208, 1487
BspPI	GGATC	4 cut(s)	323, 401, 688, 765
BspQI	GCTCTTC	2 cut(s)	104, 245
BspT104I	TTCGAA	1 cut(s)	547
BspT107I	GGYRCC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	473
BsrI	ACTGG	2 cut(s)	559, 1281
BssAI	RCCGGY	1 cut(s)	473
BssECI	CCNNGG	2 cut(s)	276, 597
BssMI	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
BssNI	GRCGYC	1 cut(s)	362
BssSI	CACGAG	1 cut(s)	1269
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	1269
Bst2UI	CCWGG	2 cut(s)	598, 744
Bst4CI	ACNGT	3 cut(s)	577, 1611, 1693
Bst6I	CTCTTC	6 cut(s)	104, 245, 294, 707, 911, 1649
BstACI	GRCGYC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	1322
BstBI	TTCGAA	1 cut(s)	547
BstC8I	GCNNGC	5 cut(s)	209, 469, 1009, 1369, 1636
BstF5I	GGATG	2 cut(s)	331, 840
BstH2I	RGCGCY	2 cut(s)	155, 365
BstHHI	GCGC	2 cut(s)	154, 364
BstKTI	GATC	8 cut(s)	331, 396, 683, 760, 982, 1349, 1428, 1606
BstMAI	GTCTC	2 cut(s)	182, 1534
BstMBI	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
BstMWI	GCNNNNNNNGC	7 cut(s)	142, 151, 192, 208, 468, 1493, 1631
BstNI	CCWGG	2 cut(s)	598, 744
BstNSI	RCATGY	1 cut(s)	1460
BstSCI	CCNGG	3 cut(s)	462, 596, 742
BstSFI	CTRYAG	4 cut(s)	9, 975, 1494, 1596
BstV1I	GCAGC	5 cut(s)	704, 1277, 1480, 1520, 1618
BstV2I	GAAGAC	2 cut(s)	183, 1338
BstX2I	RGATCY	3 cut(s)	680, 979, 1603
BstXI	CCANNNNNNTGG	3 cut(s)	604, 1261, 1349
BstYI	RGATCY	3 cut(s)	680, 979, 1603
Bsu15I	ATCGAT	1 cut(s)	1345
Bsu36I	CCTNAGG	1 cut(s)	1585
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	8 cut(s)	167, 275, 401, 419, 462, 608, 1007, 1590
BsuTUI	ATCGAT	1 cut(s)	1345
BtsCI	GGATG	2 cut(s)	331, 840
BtsI	GCAGTG	1 cut(s)	1099
BtsIMutI	CAGTG	4 cut(s)	916, 1099, 1116, 1313
BveI	ACCTGC	3 cut(s)	604, 1208, 1487
Cac8I	GCNNGC	5 cut(s)	209, 469, 1009, 1369, 1636
CfoI	GCGC	2 cut(s)	154, 364
Cfr10I	RCCGGY	1 cut(s)	473
Cfr13I	GGNCC	2 cut(s)	460, 805
ClaI	ATCGAT	1 cut(s)	1345
CseI	GACGC	2 cut(s)	1000, 1362
CsiI	ACCWGGT	1 cut(s)	742
Csp6I	GTAC	1 cut(s)	1694
CspAI	ACCGGT	1 cut(s)	473
CviAII	CATG	4 cut(s)	421, 1160, 1457, 1685
CviQI	GTAC	1 cut(s)	1694
DinI	GGCGCC	1 cut(s)	363
DpnI	GATC	8 cut(s)	330, 395, 682, 759, 981, 1348, 1427, 1605
DpnII	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	6 cut(s)	104, 245, 294, 707, 911, 1649
EarI	CTCTTC	6 cut(s)	104, 245, 294, 707, 911, 1649
EciI	GGCGGA	2 cut(s)	260, 464
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	2 cut(s)	401, 1590
Eco24I	GRGCYC	2 cut(s)	204, 469
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	2 cut(s)	1075, 1282
Eco47I	GGWCC	1 cut(s)	805
Eco47III	AGCGCT	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	3 cut(s)	158, 401, 892
Eco72I	CACGTG	1 cut(s)	1322
Eco81I	CCTNAGG	1 cut(s)	1585
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	805
EcoRII	CCWGG	2 cut(s)	596, 742
EcoRV	GATATC	2 cut(s)	1075, 1282
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	204, 469
EgeI	GGCGCC	1 cut(s)	363
EheI	GGCGCC	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	4 cut(s)	424, 1163, 1460, 1688
FaqI	GGGAC	1 cut(s)	1196
FatI	CATG	4 cut(s)	420, 1159, 1456, 1684
FblI	GTMKAC	1 cut(s)	1059
Fnu4HI	GCNGC	5 cut(s)	693, 1266, 1494, 1509, 1632
FokI	GGATG	2 cut(s)	338, 847
FriOI	GRGCYC	2 cut(s)	204, 469
Fsp4HI	GCNGC	5 cut(s)	693, 1266, 1494, 1509, 1632
FspBI	CTAG	4 cut(s)	866, 1044, 1053, 1404
GlaI	GCGC	2 cut(s)	153, 363
GluI	GCNGC	5 cut(s)	693, 1266, 1494, 1509, 1632
GsuI	CTGGAG	2 cut(s)	53, 1398
HaeII	RGCGCY	2 cut(s)	155, 365
HaeIII	GGCC	8 cut(s)	167, 275, 401, 419, 462, 608, 1007, 1590
HapII	CCGG	2 cut(s)	463, 474
HgaI	GACGC	2 cut(s)	1000, 1362
HhaI	GCGC	2 cut(s)	154, 364
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	4 cut(s)	424, 1163, 1460, 1688
Hin6I	GCGC	2 cut(s)	152, 362
HinP1I	GCGC	2 cut(s)	152, 362
HincII	GTYRAC	2 cut(s)	522, 1199
HindII	GTYRAC	2 cut(s)	522, 1199
HinfI	GANTC	7 cut(s)	77, 89, 128, 236, 412, 515, 1436
HpaI	GTTAAC	1 cut(s)	522
HpaII	CCGG	2 cut(s)	463, 474
HphI	GGTGA	3 cut(s)	328, 1456, 1681
Hpy166II	GTNNAC	7 cut(s)	408, 522, 625, 1060, 1199, 1274, 1313
Hpy188III	TCNNGA	7 cut(s)	698, 1070, 1240, 1350, 1377, 1555, 1731
Hpy8I	GTNNAC	7 cut(s)	408, 522, 625, 1060, 1199, 1274, 1313
Hpy99I	CGWCG	2 cut(s)	173, 176
HpyCH4III	ACNGT	3 cut(s)	577, 1611, 1693
HpyCH4IV	ACGT	6 cut(s)	15, 425, 852, 1062, 1321, 1482
HpyF10VI	GCNNNNNNNGC	7 cut(s)	142, 151, 192, 208, 468, 1493, 1631
HpySE526I	ACGT	6 cut(s)	15, 425, 852, 1062, 1321, 1482
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	4 cut(s)	424, 1163, 1460, 1688
HspAI	GCGC	2 cut(s)	152, 362
KasI	GGCGCC	1 cut(s)	361
KspAI	GTTAAC	1 cut(s)	522
Kzo9I	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
LguI	GCTCTTC	2 cut(s)	104, 245
LmnI	GCTCC	6 cut(s)	43, 183, 200, 1163, 1471, 1570
Lsp1109I	GCAGC	5 cut(s)	704, 1277, 1480, 1520, 1618
LweI	GCATC	1 cut(s)	668
MabI	ACCWGGT	1 cut(s)	742
MaeI	CTAG	4 cut(s)	866, 1044, 1053, 1404
MaeII	ACGT	6 cut(s)	15, 425, 852, 1062, 1321, 1482
MaeIII	GTNAC	5 cut(s)	340, 883, 1207, 1659, 1687
MalI	GATC	8 cut(s)	330, 395, 682, 759, 981, 1348, 1427, 1605
MboI	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
MfeI	CAATTG	1 cut(s)	1476
MflI	RGATCY	3 cut(s)	680, 979, 1603
MhlI	GDGCHC	4 cut(s)	204, 469, 571, 791
MlsI	TGGCCA	1 cut(s)	608
MluNI	TGGCCA	1 cut(s)	608
Mly113I	GGCGCC	1 cut(s)	362
MlyI	GAGTC	4 cut(s)	83, 86, 137, 524
Mox20I	TGGCCA	1 cut(s)	608
MroXI	GAANNNNTTC	1 cut(s)	861
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	3 cut(s)	521, 957, 1298
MslI	CAYNNNNRTG	1 cut(s)	1259
Msp20I	TGGCCA	1 cut(s)	608
MspI	CCGG	2 cut(s)	463, 474
MspR9I	CCNGG	3 cut(s)	464, 598, 744
MunI	CAATTG	1 cut(s)	1476
Mva1269I	GAATGC	1 cut(s)	1550
MvaI	CCWGG	2 cut(s)	598, 744
MwoI	GCNNNNNNNGC	7 cut(s)	142, 151, 192, 208, 468, 1493, 1631
NarI	GGCGCC	1 cut(s)	362
NciI	CCSGG	1 cut(s)	464
NdeII	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
NlaIII	CATG	4 cut(s)	424, 1163, 1460, 1688
NlaIV	GGNNCC	4 cut(s)	39, 363, 806, 953
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	3 cut(s)	1207, 1659, 1687
NspI	RCATGY	1 cut(s)	1460
NspV	TTCGAA	1 cut(s)	547
OliI	CACNNNNGTG	1 cut(s)	1259
PaqCI	CACCTGC	1 cut(s)	604
PceI	AGGCCT	2 cut(s)	401, 1590
PciSI	GCTCTTC	2 cut(s)	104, 245
PctI	GAATGC	1 cut(s)	1550
PdmI	GAANNNNTTC	1 cut(s)	861
PfeI	GAWTC	3 cut(s)	236, 412, 1436
PinAI	ACCGGT	1 cut(s)	473
PkrI	GCNGC	5 cut(s)	694, 1267, 1495, 1510, 1633
PleI	GAGTC	4 cut(s)	83, 85, 136, 523
PluTI	GGCGCC	1 cut(s)	365
PmaCI	CACGTG	1 cut(s)	1322
PmlI	CACGTG	1 cut(s)	1322
PpsI	GAGTC	4 cut(s)	83, 85, 136, 523
Ppu21I	YACGTR	1 cut(s)	1322
PpuMI	RGGWCCY	1 cut(s)	805
PshBI	ATTAAT	1 cut(s)	1298
Psp124BI	GAGCTC	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	805
Psp6I	CCWGG	2 cut(s)	596, 742
PspCI	CACGTG	1 cut(s)	1322
PspGI	CCWGG	2 cut(s)	596, 742
PspN4I	GGNNCC	4 cut(s)	39, 363, 806, 953
PspPI	GGNCC	2 cut(s)	460, 805
PspPPI	RGGWCCY	1 cut(s)	805
PsrI	GAACNNNNNNTAC	2 cut(s)	876, 908
PstI	CTGCAG	3 cut(s)	979, 1498, 1600
PsuI	RGATCY	3 cut(s)	680, 979, 1603
RsaI	GTAC	1 cut(s)	1695
RsaNI	GTAC	1 cut(s)	1694
RseI	CAYNNNNRTG	1 cut(s)	1259
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	2 cut(s)	104, 245
SaqAI	TTAA	3 cut(s)	521, 957, 1298
SatI	GCNGC	5 cut(s)	693, 1266, 1494, 1509, 1632
Sau3AI	GATC	8 cut(s)	328, 393, 680, 757, 979, 1346, 1425, 1603
Sau96I	GGNCC	2 cut(s)	460, 805
SchI	GAGTC	4 cut(s)	83, 86, 137, 524
ScrFI	CCNGG	3 cut(s)	464, 598, 744
SduI	GDGCHC	4 cut(s)	204, 469, 571, 791
SexAI	ACCWGGT	1 cut(s)	742
SfaNI	GCATC	1 cut(s)	668
SfcI	CTRYAG	4 cut(s)	9, 975, 1494, 1596
SfoI	GGCGCC	1 cut(s)	363
SfuI	TTCGAA	1 cut(s)	547
SinI	GGWCC	1 cut(s)	805
SmiMI	CAYNNNNRTG	1 cut(s)	1259
SmlI	CTYRAG	2 cut(s)	696, 784
SmoI	CTYRAG	2 cut(s)	696, 784
SseBI	AGGCCT	2 cut(s)	401, 1590
SsiI	CCGC	3 cut(s)	145, 245, 449
SspDI	GGCGCC	1 cut(s)	361
SspI	AATATT	1 cut(s)	940
SspMI	CTAG	4 cut(s)	866, 1044, 1053, 1404
SstI	GAGCTC	1 cut(s)	204
StuI	AGGCCT	2 cut(s)	401, 1590
StyD4I	CCNGG	3 cut(s)	462, 596, 742
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	577, 1611, 1693
TaiI	ACGT	6 cut(s)	18, 428, 855, 1065, 1324, 1485
TaqI	TCGA	8 cut(s)	68, 266, 396, 429, 547, 1241, 1345, 1428
TfiI	GAWTC	3 cut(s)	236, 412, 1436
Tru1I	TTAA	3 cut(s)	521, 957, 1298
Tru9I	TTAA	3 cut(s)	521, 957, 1298
TscAI	CASTG	4 cut(s)	916, 1099, 1123, 1313
TseFI	GTSAC	3 cut(s)	1207, 1659, 1687
TseI	GCWGC	5 cut(s)	692, 1265, 1493, 1508, 1631
Tsp45I	GTSAC	3 cut(s)	1207, 1659, 1687
TspDTI	ATGAA	5 cut(s)	74, 828, 837, 1008, 1016
TspRI	CASTG	4 cut(s)	916, 1099, 1123, 1313
VpaK11BI	GGWCC	1 cut(s)	805
VspI	ATTAAT	1 cut(s)	1298
XapI	RAATTY	5 cut(s)	542, 632, 861, 1235, 1448
XceI	RCATGY	1 cut(s)	1460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XmiI	GTMKAC	1 cut(s)	1059
XmnI	GAANNNNTTC	1 cut(s)	861
XspI	CTAG	4 cut(s)	866, 1044, 1053, 1404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.