Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013165

Physical Location & Seq

Genomic Coordinates Reverse (-)

23102748 .. 23105018

Gene Structure 2271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCGAAGGGGGTCTATCTTCTATTCGCCGCCGCGATTGTTGCTCTTATAGTCCTCTCTCCCTTTAAGCCACGCCACCATGGCCATCACCGCCGCCTTGGCTTCACCGGCCACGTCCCCATTTTCGACCCTCTAGTATCCAAGATGGAACGGTACGTGGAGGAGAAGGGATTAGAAGACCACAATCATACAATAGATACGGAACACGACTTGGTTATTGCTAATGATGTTGAGGAAGCTCAGCAATATTTGAACGAGGCGGGAAACTTGAATTTAACCATGAGGCTGGTGAATCTCTTCCCTTTGTTGGATGTGGCACCCGAAGATGGATTTGTCAGCTACGATGAGCTGAAGCATTGGATTGTGGCACAAGCCATGGAAAGAATGATATATAGGACACGGAGAGTAATGGCAGAAAATGATAGAGATGGAGATAGAGCCATTTCTTTCAGGGAGTATCTGCCACAATTTTCCATTGAGGATATTGATAGGAATGATATGGAGCATGGAGAAGCTGGATGGTGGAAGCAGCAATTTGATAATGCTGATGCTGATCGGAATGGTTTACTTACCTTCAGTGAACTTAAAGATTTTTTGCACCCAGAAGACAGTTCAAATGACCGAATTCAAAGATGGCTGTTGACAGAAAAGATGAAAAGGATGGACCATGATAAAGATGGCAAGCTGAGTTTTGTGGAGTTTTCGGACAATGCTTACAATGTCTTTAAGAATTACGTTGAATTTGAGACAAGCGACTTACCCATAGCAAAAGAGAAATTTGCAGAGCTTGATGTGAACAAGAACAAATTCTTGGAAGCTGAAGAATTGAGACCGATACTACATTATCTTTACCCAGGAGAACTAACCTATGCTACTTATTACACAAGTTTTCTAATTCATGAGGCTGATGATAACAAAGATGGAAAATTAACGTTGGAAGAGATGCTGCATCACGAAGATGTTTTCTACAACACGGTCTATGAGAGCAGCGACGACGATGACATCCATGATGATCATGACGAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

343

Amino Acids

40.16

Weight (kDa)

4.74

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	175 - 235	4.2e-08	EF-hand domain pair
EF-hand_7	PF13499	257 - 317	2.3e-07	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27790 AT4G27790
fragaria_vesca	FvH4_7g32060
malus_domestica	MD01G1223500.v1.1 MD07G1294200.v1.1
prunus_persica	Prupe.2G314000_v2.0.a1
pyrus_communis	pycom07g26700
rosa_chinensis	RchiOBHm_Chr1g0381671
rosa_laevigata	RLG00000026216
rosa_multiflora	Rmu_sc0004579.1_g000002 Rmu_sc0004579.1_g000003
rosa_roxburghii	Rroxscaffold_4G00278530
rosa_rugosa	Rorug01G0430300
rosa_samantha	Rh1AG453600 Rh1BG410800 Rh1CG425200 Rh1DG442500
rosa_wichuraiana	Rw1G039570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AccII	CGCG	1 cut(s)	35
AciI	CCGC	5 cut(s)	30, 33, 91, 94, 260
AclI	AACGTT	1 cut(s)	932
AcoI	YGGCCR	2 cut(s)	82, 109
AcsI	RAATTY	6 cut(s)	271, 624, 740, 776, 806, 1022
AcuI	CTGAAG	3 cut(s)	371, 559, 840
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	307, 326
AgsI	TTSAA	5 cut(s)	253, 271, 615, 629, 740
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	853
AjuI	GAANNNNNNNTTGG	2 cut(s)	794, 826
AluBI	AGCT	7 cut(s)	239, 339, 349, 515, 685, 787, 818
AluI	AGCT	7 cut(s)	239, 339, 349, 515, 685, 787, 818
Alw26I	GTCTC	2 cut(s)	740, 823
AoxI	GGCC	2 cut(s)	82, 109
ApeKI	GCWGC	3 cut(s)	529, 946, 987
ApoI	RAATTY	6 cut(s)	271, 624, 740, 776, 806, 1022
Asp700I	GAANNNNTTC	2 cut(s)	296, 806
AspS9I	GGNCC	1 cut(s)	664
AsuHPI	GGTGA	3 cut(s)	80, 97, 301
AvaII	GGWCC	1 cut(s)	664
BalI	TGGCCA	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	316
BbsI	GAAGAC	2 cut(s)	183, 612
BbvI	GCAGC	3 cut(s)	541, 933, 999
BccI	CCATC	9 cut(s)	93, 139, 320, 422, 513, 627, 655, 671, 914
BciT130I	CCWGG	1 cut(s)	855
BciVI	GTATCC	1 cut(s)	148
BclI	TGATCA	1 cut(s)	1012
BcoDI	GTCTC	2 cut(s)	740, 823
BfaI	CTAG	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	148
BglI	GCCNNNNNGGC	2 cut(s)	81, 99
BisI	GCNGC	6 cut(s)	30, 33, 94, 530, 947, 988
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	6 cut(s)	31, 34, 95, 531, 948, 989
Bme1390I	CCNGG	1 cut(s)	855
Bme18I	GGWCC	1 cut(s)	664
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	664
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	855
BmsI	GCATC	3 cut(s)	538, 933, 958
BpiI	GAAGAC	2 cut(s)	183, 612
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	823
BsaJI	CCNNGG	4 cut(s)	79, 97, 375, 853
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 326
Bse118I	RCCGGY	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	855
BseDI	CCNNGG	4 cut(s)	79, 97, 375, 853
BseGI	GGATG	4 cut(s)	316, 524, 666, 1002
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	307, 326
BseMII	CTCAG	2 cut(s)	254, 677
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	3 cut(s)	541, 933, 999
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	84, 111
BshNI	GGYRCC	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	307, 326
BsmAI	GTCTC	2 cut(s)	740, 823
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	84, 111
Bso31I	GGTCTC	1 cut(s)	823
Bsp143I	GATC	2 cut(s)	553, 1012
Bsp1720I	GCTNAGC	1 cut(s)	240
Bsp19I	CCATGG	2 cut(s)	79, 375
BspACI	CCGC	5 cut(s)	30, 33, 91, 94, 260
BspANI	GGCC	2 cut(s)	84, 111
BspCNI	CTCAG	2 cut(s)	253, 678
BspFNI	CGCG	1 cut(s)	35
BspHI	TCATGA	2 cut(s)	898, 1015
BspLI	GGNNCC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	823
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	4 cut(s)	79, 97, 375, 853
BssMI	GATC	2 cut(s)	553, 1012
BssT1I	CCWWGG	3 cut(s)	79, 97, 375
Bst2UI	CCWGG	1 cut(s)	855
Bst4CI	ACNGT	3 cut(s)	153, 611, 976
Bst6I	CTCTTC	2 cut(s)	302, 933
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	683
BstDEI	CTNAG	2 cut(s)	240, 686
BstDSI	CCRYGG	2 cut(s)	79, 375
BstF5I	GGATG	4 cut(s)	316, 524, 666, 1002
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	2 cut(s)	556, 1015
BstMAI	GTCTC	2 cut(s)	740, 823
BstMBI	GATC	2 cut(s)	553, 1012
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 81, 90, 99, 108
BstNI	CCWGG	1 cut(s)	855
BstSCI	CCNGG	1 cut(s)	853
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	541, 933, 999
BstV2I	GAAGAC	2 cut(s)	183, 612
BstXI	CCANNNNNNTGG	1 cut(s)	286
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	84, 111
BtgI	CCRYGG	2 cut(s)	79, 375
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	4 cut(s)	316, 524, 666, 1002
BtsIMutI	CAGTG	1 cut(s)	583
Cac8I	GCNNGC	1 cut(s)	683
CciI	TCATGA	2 cut(s)	898, 1015
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	664
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	8 cut(s)	80, 280, 376, 506, 668, 899, 1007, 1016
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	240, 686
DpnI	GATC	2 cut(s)	555, 1014
DpnII	GATC	2 cut(s)	553, 1012
EaeI	YGGCCR	2 cut(s)	82, 109
Eam1104I	CTCTTC	2 cut(s)	302, 933
EarI	CTCTTC	2 cut(s)	302, 933
Eco130I	CCWWGG	3 cut(s)	79, 97, 375
Eco31I	GGTCTC	1 cut(s)	823
Eco47I	GGWCC	1 cut(s)	664
Eco57I	CTGAAG	3 cut(s)	371, 559, 840
EcoRI	GAATTC	2 cut(s)	624, 1022
EcoRII	CCWGG	1 cut(s)	853
EcoT14I	CCWWGG	3 cut(s)	79, 97, 375
ErhI	CCWWGG	3 cut(s)	79, 97, 375
FaeI	CATG	8 cut(s)	83, 283, 379, 509, 671, 902, 1010, 1019
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	8 cut(s)	79, 279, 375, 505, 667, 898, 1006, 1015
FauI	CCCGC	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	1012
Fnu4HI	GCNGC	6 cut(s)	30, 33, 94, 530, 947, 988
FokI	GGATG	4 cut(s)	323, 531, 673, 989
Fsp4HI	GCNGC	6 cut(s)	30, 33, 94, 530, 947, 988
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	6 cut(s)	30, 33, 94, 530, 947, 988
HaeIII	GGCC	2 cut(s)	84, 111
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	8 cut(s)	83, 283, 379, 509, 671, 902, 1010, 1019
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	3 cut(s)	80, 97, 301
Hpy166II	GTNNAC	4 cut(s)	566, 581, 642, 796
Hpy188I	TCNGA	2 cut(s)	558, 706
Hpy188III	TCNNGA	3 cut(s)	899, 953, 1016
Hpy8I	GTNNAC	4 cut(s)	566, 581, 642, 796
Hpy99I	CGWCG	2 cut(s)	995, 998
HpyAV	CCTTC	2 cut(s)	160, 583
HpyCH4III	ACNGT	3 cut(s)	153, 611, 976
HpyCH4IV	ACGT	4 cut(s)	114, 156, 735, 932
HpyCH4V	TGCA	3 cut(s)	598, 782, 949
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 81, 90, 99, 108
HpyF3I	CTNAG	2 cut(s)	240, 686
HpySE526I	ACGT	4 cut(s)	114, 156, 735, 932
Hsp92II	CATG	8 cut(s)	83, 283, 379, 509, 671, 902, 1010, 1019
Ksp22I	TGATCA	1 cut(s)	1012
Kzo9I	GATC	2 cut(s)	553, 1012
LmnI	GCTCC	1 cut(s)	502
LpnPI	CCDG	7 cut(s)	121, 272, 436, 501, 615, 840, 867
Lsp1109I	GCAGC	3 cut(s)	541, 933, 999
LweI	GCATC	3 cut(s)	538, 933, 958
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	4 cut(s)	114, 156, 735, 932
MalI	GATC	2 cut(s)	555, 1014
MboI	GATC	2 cut(s)	553, 1012
MboII	GAAGA	8 cut(s)	11, 188, 289, 335, 617, 833, 950, 968
MlsI	TGGCCA	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	84
MmeI	TCCRAC	2 cut(s)	288, 915
MnlI	CCTC	8 cut(s)	65, 141, 154, 226, 250, 276, 472, 895
Mox20I	TGGCCA	1 cut(s)	84
MroXI	GAANNNNTTC	2 cut(s)	296, 806
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	5 cut(s)	66, 275, 585, 726, 929
MslI	CAYNNNNRTG	1 cut(s)	957
Msp20I	TGGCCA	1 cut(s)	84
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	855
MvaI	CCWGG	1 cut(s)	855
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	5 cut(s)	41, 81, 90, 99, 108
NcoI	CCATGG	2 cut(s)	79, 375
NdeII	GATC	2 cut(s)	553, 1012
NlaIII	CATG	8 cut(s)	83, 283, 379, 509, 671, 902, 1010, 1019
NlaIV	GGNNCC	1 cut(s)	318
PagI	TCATGA	2 cut(s)	898, 1015
PdmI	GAANNNNTTC	2 cut(s)	296, 806
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	6 cut(s)	31, 34, 95, 531, 948, 989
Ppu21I	YACGTR	1 cut(s)	157
Psp1406I	AACGTT	1 cut(s)	932
Psp6I	CCWGG	1 cut(s)	853
PspGI	CCWGG	1 cut(s)	853
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	664
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	957
SaqAI	TTAA	5 cut(s)	66, 275, 585, 726, 929
SatI	GCNGC	6 cut(s)	30, 33, 94, 530, 947, 988
Sau3AI	GATC	2 cut(s)	553, 1012
Sau96I	GGNCC	1 cut(s)	664
ScrFI	CCNGG	1 cut(s)	855
SfaNI	GCATC	3 cut(s)	538, 933, 958
SinI	GGWCC	1 cut(s)	664
SmiMI	CAYNNNNRTG	1 cut(s)	957
SsiI	CCGC	5 cut(s)	30, 33, 91, 94, 260
SspI	AATATT	1 cut(s)	248
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	853
StyI	CCWWGG	3 cut(s)	79, 97, 375
TaaI	ACNGT	3 cut(s)	153, 611, 976
TaiI	ACGT	4 cut(s)	117, 159, 738, 935
TaqI	TCGA	1 cut(s)	126
TaqII	GACCGA	2 cut(s)	636, 847
TauI	GCSGC	3 cut(s)	32, 35, 96
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	5 cut(s)	66, 275, 585, 726, 929
Tru9I	TTAA	5 cut(s)	66, 275, 585, 726, 929
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	3 cut(s)	529, 946, 987
TspDTI	ATGAA	2 cut(s)	668, 887
TspGWI	ACGGA	2 cut(s)	215, 415
TspRI	CASTG	1 cut(s)	583
VpaK11BI	GGWCC	1 cut(s)	664
XapI	RAATTY	6 cut(s)	271, 624, 740, 776, 806, 1022
XcmI	CCANNNNNNNNNTGG	1 cut(s)	674
XmnI	GAANNNNTTC	2 cut(s)	296, 806
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.