Prupe.2G314000_v2.0.a1

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013165
Physical Location & Seq
Reverse (-)
29558787 .. 29560764
1978 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G314000.1

Sequence Viewer

Length: 1059 bp
ATGGCGAAGGCAGTGGTCTATGCGCTACTTGCCACCGCCTTTATCCTTGTCATGGTCTTCTGTCCCTCCAAACAACATGGCCACCACGATCATCTTGGCCTAAACCGGCGTCTTGGCTTCAGAGATCATGTCCCGGTTTTCGACCCTCTTGTTGCCAAGATGGAGCGATATGCGGAGGAAAATGGATTAGGAGGCCAAACTCATAACCTGGATTTGGTGGAACACAGTCCCATGATGGATACCAGTGAGGTTGAAGAAGTACATGAATATTTTAGCGACGAGGGAAAGTTGAACCTCACATTGAGGCTGCTCAGTTTGTTCCCTTTGATAGACCAGGCACCAAAAGATAGCTACATTAGCTCCAATGAACTCAAGCACTGGCTCACACAACAGGCCGTGGAAAGGTTGAATTACAGGACCCAAAAAGAAATGGAATCATATGATAAAGATGGGGATGGAAACATTTCTTTCAGCGAGTATCAGCCCAAGTTTTCCAGTCAGGATATCAAGAAAAATGGAATGGAGCATGGAGAAGCTGGATGGTGGAAGCAGCAATTTGATAATGCAGATGCTGATAAGAATGGAACTCTTACCTTCAATGAATTTAAAGATTTGCTGCACCCAGAAGACAGTAATAACAGCGACATTCATAAATGGCTGTTGGCAGAAAAAATGAAACGAATGGACCAGGATGACGATGGAAAACTAAATTTCATGGAATTTTCACACAATGCTTATGATAGTTTCAAGAGTTACGTCGAATTCGAAACAGGCGGGGTCAAAGCACCCACAGCAGAAGAGAAATTTGCAGAGCTTGATTTGAACAAGGACAATCTCTTGGAAGTGGAAGAATTGAAACCCCTGCTGCATTACCTTCACCCAGGAGAACTGTCCTATAGTAATTATTATGCAAGTTTTCTTATGTCTGAGGCGGATGATAACAAAGACGGCAAATTAACGCTGGATGAGATGCTGGATCATGATTATGTTTTCTACAGCACAGTCTATGATGCCGGCGTTAATGACGATAATGAAGAAGATTATCACGACGAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

353

Amino Acids

40.7

Weight (kDa)

4.64

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27790 AT4G27790
fragaria_vesca FvH4_7g32060
malus_domestica MD01G1223500.v1.1 MD07G1294200.v1.1
prunus_persica Prupe.2G314000_v2.0.a1
pyrus_communis pycom07g26700
rosa_chinensis RchiOBHm_Chr1g0381671
rosa_laevigata RLG00000026216
rosa_multiflora Rmu_sc0004579.1_g000002 Rmu_sc0004579.1_g000003
rosa_roxburghii Rroxscaffold_4G00278530
rosa_rugosa Rorug01G0430300
rosa_samantha Rh1AG453600 Rh1BG410800 Rh1CG425200 Rh1DG442500
rosa_wichuraiana Rw1G039570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 337
AciI CCGC 4 cut(s) 36, 173, 774, 932
AclWI GGATC 1 cut(s) 984
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 6 cut(s) 602, 709, 719, 761, 803, 1052
AcuI CTGAAG 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 109
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 3 cut(s) 52, 214, 402
AgsI TTSAA 7 cut(s) 254, 292, 409, 598, 748, 823, 856
AjnI CCWGG 4 cut(s) 207, 333, 687, 880
AluBI AGCT 4 cut(s) 351, 360, 536, 814
AluI AGCT 4 cut(s) 351, 360, 536, 814
AlwI GGATC 1 cut(s) 984
AlwNI CAGNNNCTG 1 cut(s) 572
AoxI GGCC 4 cut(s) 79, 97, 193, 393
ApeKI GCWGC 4 cut(s) 307, 550, 616, 865
ApoI RAATTY 6 cut(s) 602, 709, 719, 761, 803, 1052
Asp700I GAANNNNTTC 1 cut(s) 463
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 2 cut(s) 417, 685
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 869
AsuII TTCGAA 1 cut(s) 765
AvaII GGWCC 2 cut(s) 417, 685
BalI TGGCCA 1 cut(s) 81
BanI GGYRCC 1 cut(s) 337
BbsI GAAGAC 2 cut(s) 49, 633
BbvI GCAGC 4 cut(s) 294, 562, 603, 852
BccI CCATC 6 cut(s) 154, 229, 443, 449, 534, 692
BceAI ACGGC 2 cut(s) 380, 964
BciT130I CCWGG 4 cut(s) 209, 335, 689, 882
BciVI GTATCC 1 cut(s) 232
BcnI CCSGG 1 cut(s) 134
BfmI CTRYAG 2 cut(s) 895, 994
BfuI GTATCC 1 cut(s) 232
BisI GCNGC 4 cut(s) 308, 551, 617, 866
BlsI GCNGC 4 cut(s) 309, 552, 618, 867
Bme1390I CCNGG 5 cut(s) 134, 209, 335, 689, 882
Bme18I GGWCC 2 cut(s) 417, 685
BmgT120I GGNCC 2 cut(s) 417, 685
BmiI GGNNCC 2 cut(s) 339, 419
BmrFI CCNGG 5 cut(s) 134, 209, 335, 689, 882
BmsI GCATC 3 cut(s) 559, 960, 1000
BpiI GAAGAC 2 cut(s) 49, 633
Bpu14I TTCGAA 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 396, 880
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 214, 402
Bse118I RCCGGY 2 cut(s) 105, 1013
Bse1I ACTGG 3 cut(s) 243, 383, 495
BseBI CCWGG 4 cut(s) 209, 335, 689, 882
BseDI CCNNGG 2 cut(s) 396, 880
BseGI GGATG 5 cut(s) 460, 545, 697, 940, 970
BseLI CCNNNNNNNGG 3 cut(s) 52, 214, 402
BseMII CTCAG 2 cut(s) 325, 918
BseNI ACTGG 3 cut(s) 243, 383, 495
BseXI GCAGC 4 cut(s) 294, 562, 603, 852
BsgI GTGCAG 1 cut(s) 602
BshFI GGCC 4 cut(s) 81, 99, 195, 395
BshNI GGYRCC 1 cut(s) 337
BsiSI CCGG 3 cut(s) 106, 134, 1014
BslFI GGGAC 3 cut(s) 48, 116, 213
BslI CCNNNNNNNGG 3 cut(s) 52, 214, 402
BsmFI GGGAC 3 cut(s) 48, 116, 213
BsnI GGCC 4 cut(s) 81, 99, 195, 395
Bsp119I TTCGAA 1 cut(s) 765
Bsp143I GATC 3 cut(s) 88, 124, 976
BspACI CCGC 4 cut(s) 36, 173, 774, 932
BspANI GGCC 4 cut(s) 81, 99, 195, 395
BspCNI CTCAG 2 cut(s) 324, 919
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 2 cut(s) 339, 419
BspPI GGATC 1 cut(s) 984
BspT104I TTCGAA 1 cut(s) 765
BspT107I GGYRCC 1 cut(s) 337
BsrFI RCCGGY 2 cut(s) 105, 1013
BsrI ACTGG 3 cut(s) 243, 383, 495
BssAI RCCGGY 2 cut(s) 105, 1013
BssECI CCNNGG 2 cut(s) 396, 880
BssMI GATC 3 cut(s) 88, 124, 976
BssNI GRCGYC 1 cut(s) 109
Bst2UI CCWGG 4 cut(s) 209, 335, 689, 882
Bst4CI ACNGT 4 cut(s) 227, 632, 891, 1003
Bst6I CTCTTC 1 cut(s) 792
BstACI GRCGYC 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 765
BstC8I GCNNGC 1 cut(s) 1015
BstDEI CTNAG 2 cut(s) 311, 927
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 5 cut(s) 460, 545, 697, 940, 970
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 3 cut(s) 91, 127, 979
BstMBI GATC 3 cut(s) 88, 124, 976
BstMWI GCNNNNNNNGC 3 cut(s) 29, 357, 791
BstNI CCWGG 4 cut(s) 209, 335, 689, 882
BstSCI CCNGG 5 cut(s) 132, 207, 333, 687, 880
BstSFI CTRYAG 2 cut(s) 895, 994
BstV1I GCAGC 4 cut(s) 294, 562, 603, 852
BstV2I GAAGAC 2 cut(s) 49, 633
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 4 cut(s) 81, 99, 195, 395
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 5 cut(s) 460, 545, 697, 940, 970
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 3 cut(s) 18, 250, 376
Cac8I GCNNGC 1 cut(s) 1015
CaiI CAGNNNCTG 1 cut(s) 572
CciI TCATGA 1 cut(s) 979
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 2 cut(s) 105, 1013
Cfr13I GGNCC 2 cut(s) 417, 685
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 260
CviAII CATG 8 cut(s) 52, 77, 128, 232, 263, 527, 715, 980
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 2 cut(s) 311, 927
DpnI GATC 3 cut(s) 90, 126, 978
DpnII GATC 3 cut(s) 88, 124, 976
DraI TTTAAA 1 cut(s) 607
EaeI YGGCCR 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
EciI GGCGGA 1 cut(s) 947
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 417, 685
Eco57I CTGAAG 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 417
EcoRI GAATTC 2 cut(s) 761, 1052
EcoRII CCWGG 4 cut(s) 207, 333, 687, 880
EcoRV GATATC 1 cut(s) 505
FaeI CATG 8 cut(s) 55, 80, 131, 235, 266, 530, 718, 983
FaqI GGGAC 3 cut(s) 48, 116, 213
FatI CATG 8 cut(s) 51, 76, 127, 231, 262, 526, 714, 979
FauI CCCGC 1 cut(s) 767
FauNDI CATATG 1 cut(s) 439
Fnu4HI GCNGC 4 cut(s) 308, 551, 617, 866
FokI GGATG 5 cut(s) 467, 552, 704, 947, 977
Fsp4HI GCNGC 4 cut(s) 308, 551, 617, 866
GlaI GCGC 1 cut(s) 24
GluI GCNGC 4 cut(s) 308, 551, 617, 866
HaeIII GGCC 4 cut(s) 81, 99, 195, 395
HapII CCGG 3 cut(s) 106, 134, 1014
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 8 cut(s) 55, 80, 131, 235, 266, 530, 718, 983
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 1 cut(s) 434
HpaII CCGG 3 cut(s) 106, 134, 1014
HphI GGTGA 1 cut(s) 869
Hpy188I TCNGA 2 cut(s) 122, 928
Hpy188III TCNNGA 5 cut(s) 500, 508, 748, 980, 1046
Hpy99I CGWCG 3 cut(s) 281, 761, 1052
HpyAV CCTTC 2 cut(s) 604, 884
HpyCH4III ACNGT 4 cut(s) 227, 632, 891, 1003
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 5 cut(s) 566, 619, 809, 868, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 357, 791
HpyF3I CTNAG 2 cut(s) 311, 927
HpySE526I ACGT 1 cut(s) 756
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 8 cut(s) 55, 80, 131, 235, 266, 530, 718, 983
HspAI GCGC 1 cut(s) 23
KroI GCCGGC 1 cut(s) 1013
KroNI GCCGGC 1 cut(s) 1015
Kzo9I GATC 3 cut(s) 88, 124, 976
LmnI GCTCC 3 cut(s) 163, 365, 523
Lsp1109I GCAGC 4 cut(s) 294, 562, 603, 852
LweI GCATC 3 cut(s) 559, 960, 1000
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 1 cut(s) 752
MalI GATC 3 cut(s) 90, 126, 978
MboI GATC 3 cut(s) 88, 124, 976
MboII GAAGA 7 cut(s) 49, 266, 638, 809, 860, 1046, 1049
MlsI TGGCCA 1 cut(s) 81
MluNI TGGCCA 1 cut(s) 81
MnlI CCTC 9 cut(s) 76, 156, 169, 185, 241, 274, 297, 305, 922
Mox20I TGGCCA 1 cut(s) 81
MroNI GCCGGC 1 cut(s) 1013
MroXI GAANNNNTTC 1 cut(s) 463
MscI TGGCCA 1 cut(s) 81
MseI TTAA 3 cut(s) 606, 956, 1020
MslI CAYNNNNRTG 1 cut(s) 984
Msp20I TGGCCA 1 cut(s) 81
MspI CCGG 3 cut(s) 106, 134, 1014
MspR9I CCNGG 5 cut(s) 134, 209, 335, 689, 882
MvaI CCWGG 4 cut(s) 209, 335, 689, 882
MwoI GCNNNNNNNGC 3 cut(s) 29, 357, 791
NaeI GCCGGC 1 cut(s) 1015
NciI CCSGG 1 cut(s) 134
NdeI CATATG 1 cut(s) 439
NdeII GATC 3 cut(s) 88, 124, 976
NgoMIV GCCGGC 1 cut(s) 1013
NlaIII CATG 8 cut(s) 55, 80, 131, 235, 266, 530, 718, 983
NlaIV GGNNCC 2 cut(s) 339, 419
NspV TTCGAA 1 cut(s) 765
PagI TCATGA 1 cut(s) 979
PcsI WCGNNNNNNNCGW 1 cut(s) 762
PdiI GCCGGC 1 cut(s) 1015
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 434
PkrI GCNGC 4 cut(s) 309, 552, 618, 867
PpuMI RGGWCCY 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 417
Psp6I CCWGG 4 cut(s) 207, 333, 687, 880
PspGI CCWGG 4 cut(s) 207, 333, 687, 880
PspN4I GGNNCC 2 cut(s) 339, 419
PspPI GGNCC 2 cut(s) 417, 685
PspPPI RGGWCCY 1 cut(s) 417
PstNI CAGNNNCTG 1 cut(s) 572
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 984
SaqAI TTAA 3 cut(s) 606, 956, 1020
SatI GCNGC 4 cut(s) 308, 551, 617, 866
Sau3AI GATC 3 cut(s) 88, 124, 976
Sau96I GGNCC 2 cut(s) 417, 685
ScrFI CCNGG 5 cut(s) 134, 209, 335, 689, 882
SfaNI GCATC 3 cut(s) 559, 960, 1000
SfcI CTRYAG 2 cut(s) 895, 994
SfuI TTCGAA 1 cut(s) 765
SinI GGWCC 2 cut(s) 417, 685
SmiMI CAYNNNNRTG 1 cut(s) 984
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SsiI CCGC 4 cut(s) 36, 173, 774, 932
SspI AATATT 1 cut(s) 269
StyD4I CCNGG 5 cut(s) 132, 207, 333, 687, 880
TaaI ACNGT 4 cut(s) 227, 632, 891, 1003
TaiI ACGT 1 cut(s) 759
TaqI TCGA 3 cut(s) 141, 759, 765
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 3 cut(s) 606, 956, 1020
Tru9I TTAA 3 cut(s) 606, 956, 1020
TscAI CASTG 3 cut(s) 18, 250, 383
TseI GCWGC 4 cut(s) 307, 550, 616, 865
TspDTI ATGAA 7 cut(s) 279, 381, 615, 638, 689, 703, 1047
TspRI CASTG 3 cut(s) 18, 250, 383
VpaK11BI GGWCC 2 cut(s) 417, 685
XapI RAATTY 6 cut(s) 602, 709, 719, 761, 803, 1052
XcmI CCANNNNNNNNNTGG 2 cut(s) 92, 695
XmnI GAANNNNTTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.