FvH4_7g32220

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006258
Physical Location & Seq
Reverse (-)
23187684 .. 23188680
997 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32220.t1

Sequence Viewer

Length: 321 bp
ATGGCGGTATATAGTGGAAACCCCTTCTTCAGCTGCACGAATTGCAAAAACCCTGTGGCGCTACGTGAAGATCTTTTGTCGAAAAAATTTGTGGCAAAATCTGGGGCAGCATACATGTTCTCTCATGCAATGAACGTCATTGTGGGGCAAAAGGAGGACAAGAAATTGATCACTGGTGTTTTTTCTGTTGCTGGCATACATTGCAGCAATTGTGGCCAAGAGTTAGGATGGAAGTATATTCGAGCTTATGATCCGCAACAGAAGTTCAAGGAAGGCAGGTTTATAATCGAGAGAGCAAAGATTGTCAAGGTGTACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

107

Amino Acids

11.98

Weight (kDa)

9.46

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 10 - 102 2.4e-11 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
Acc36I ACCTGC 1 cut(s) 267
AciI CCGC 2 cut(s) 5, 254
AclWI GGATC 1 cut(s) 245
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 13
AfaI GTAC 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 1 cut(s) 268
AluBI AGCT 2 cut(s) 33, 245
AluI AGCT 2 cut(s) 33, 245
AlwI GGATC 1 cut(s) 245
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 3 cut(s) 33, 107, 204
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 61
BalI TGGCCA 1 cut(s) 216
BbvI GCAGC 3 cut(s) 20, 119, 216
BccI CCATC 1 cut(s) 222
BclI TGATCA 1 cut(s) 168
BfaI CTAG 1 cut(s) 319
BfoI RGCGCY 1 cut(s) 62
BfuAI ACCTGC 1 cut(s) 267
BglII AGATCT 1 cut(s) 70
BisI GCNGC 3 cut(s) 34, 108, 205
BlsI GCNGC 3 cut(s) 35, 109, 206
BsaAI YACGTR 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 2 cut(s) 135, 199
BseGI GGATG 1 cut(s) 233
BseMI GCAATG 2 cut(s) 135, 199
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 3 cut(s) 20, 119, 216
BsgI GTGCAG 1 cut(s) 19
BshFI GGCC 1 cut(s) 216
BsnI GGCC 1 cut(s) 216
Bsp143I GATC 3 cut(s) 70, 168, 250
BspACI CCGC 2 cut(s) 5, 254
BspANI GGCC 1 cut(s) 216
BspMI ACCTGC 1 cut(s) 267
BspPI GGATC 1 cut(s) 245
BsrDI GCAATG 2 cut(s) 135, 199
BsrI ACTGG 1 cut(s) 178
BssMI GATC 3 cut(s) 70, 168, 250
BstAPI GCANNNNNTGC 2 cut(s) 42, 201
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 193
BstF5I GGATG 1 cut(s) 233
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 3 cut(s) 73, 171, 253
BstMBI GATC 3 cut(s) 70, 168, 250
BstMWI GCNNNNNNNGC 3 cut(s) 42, 201, 213
BstNSI RCATGY 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 20, 119, 216
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 193
CfoI GCGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 313
CviAII CATG 2 cut(s) 115, 125
CviJI RGCY 3 cut(s) 33, 216, 245
CviKI_1 RGCY 3 cut(s) 33, 216, 245
CviQI GTAC 1 cut(s) 313
DpnI GATC 3 cut(s) 72, 170, 252
DpnII GATC 3 cut(s) 70, 168, 250
EaeI YGGCCR 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 13
FaeI CATG 2 cut(s) 118, 128
FaiI YATR 9 cut(s) 10, 12, 112, 116, 126, 197, 237, 249, 284
FatI CATG 2 cut(s) 114, 124
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 34, 108, 205
FokI GGATG 1 cut(s) 240
Fsp4HI GCNGC 3 cut(s) 34, 108, 205
FspBI CTAG 1 cut(s) 319
GlaI GCGC 1 cut(s) 60
GluI GCNGC 3 cut(s) 34, 108, 205
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 1 cut(s) 216
HhaI GCGC 1 cut(s) 61
Hin1II CATG 2 cut(s) 118, 128
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 313
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 34, 266
HpyCH4IV ACGT 2 cut(s) 64, 135
HpyCH4V TGCA 4 cut(s) 36, 45, 128, 204
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 201, 213
HpySE526I ACGT 2 cut(s) 64, 135
Hsp92II CATG 2 cut(s) 118, 128
HspAI GCGC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 3 cut(s) 70, 168, 250
LpnPI CCDG 5 cut(s) 66, 87, 159, 177, 262
Lsp1109I GCAGC 3 cut(s) 20, 119, 216
MaeI CTAG 1 cut(s) 319
MaeII ACGT 2 cut(s) 64, 135
MalI GATC 3 cut(s) 72, 170, 252
MboI GATC 3 cut(s) 70, 168, 250
MboII GAAGA 2 cut(s) 19, 80
MfeI CAATTG 1 cut(s) 208
MflI RGATCY 1 cut(s) 70
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 4 cut(s) 40, 86, 164, 208
MluNI TGGCCA 1 cut(s) 216
MnlI CCTC 1 cut(s) 148
Mox20I TGGCCA 1 cut(s) 216
MscI TGGCCA 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 33
MunI CAATTG 1 cut(s) 208
MwoI GCNNNNNNNGC 3 cut(s) 42, 201, 213
NdeII GATC 3 cut(s) 70, 168, 250
NlaIII CATG 2 cut(s) 118, 128
NspI RCATGY 1 cut(s) 118
PciI ACATGT 1 cut(s) 114
PkrI GCNGC 3 cut(s) 35, 109, 206
Ppu21I YACGTR 1 cut(s) 65
PscI ACATGT 1 cut(s) 114
PsiI TTATAA 1 cut(s) 284
PsuI RGATCY 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SatI GCNGC 3 cut(s) 34, 108, 205
Sau3AI GATC 3 cut(s) 70, 168, 250
SetI ASST 6 cut(s) 35, 67, 138, 247, 281, 312
Sse9I AATT 4 cut(s) 40, 86, 164, 208
SsiI CCGC 2 cut(s) 5, 254
SspMI CTAG 1 cut(s) 319
TaiI ACGT 2 cut(s) 67, 138
TaqI TCGA 3 cut(s) 80, 241, 288
TasI AATT 4 cut(s) 40, 86, 164, 208
TatI WGTACW 1 cut(s) 312
TscAI CASTG 1 cut(s) 178
TseI GCWGC 3 cut(s) 33, 107, 204
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 1 cut(s) 178
XapI RAATTY 1 cut(s) 86
XceI RCATGY 1 cut(s) 118
XspI CTAG 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.