Rorug01G0431900

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006258
Physical Location & Seq
Reverse (-)
52996789 .. 53009109
12321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0431900.1

Sequence Viewer

Length: 1503 bp
ATGGACTTTCTTTCCACTGCTTTACCACCCATAGCAATAAGTTTAGCTGTAATACTCTTGGCCGTTATTTTTTGGCCGGAGAAGAACAAAAGGTACCCTCCTGTTGCCGGAACTGTCTTCCACCAAGTCATCAATTTCCCAAGGCTGCATCATTACAACACTGAGCTTGCATGCAAGTACAAAACTTACAGGATTCTTGACTTGTTCAAACATGCTATCTACACAGTAGATCCTGCAAATGTGCAATACATACTCAAAACAAATGTTGCAAACTATGGCAAGGGATTGTACCTGCATAGCATTCTATCAGATCTTATGGGAGATGGAATCTTCGTTGTGGATGGGGACAAATGGCTGCATCAAAGGAAGACATCAGGCTCTCACTTCTCAACCAAAGTACTTAGAGACTTCAATAGTGAAATCTTCAAAACTAATGGAGTAAAACTTGCTGGAATAATTTATGAAGCTGTAACCTGTGACGAATCAATGGATATCCAAGACTTGTTTATGAAATCAACCTTGGATTCAATCGTCAAGATTCTACTTGGCATCGAACTAGGCACCATGTCTGGAACAAATAATGAAGAAAATATCCGGTTTTCCAATGCTTTTGATGATGCAAACCAAGCTACCCTTCATCGTATTTCTGATATCTTCTGGAAGATCAAGCGGTTCTTGAACATTGGTAGGGAAGCAGTGCTAAGAAAAAATATAGAAGTGGTGGATCATTTTATATACAAATTAATCAACAGAAAGATTGAAGCACTCCATAATTCAGAAAATGATGAGCAATATTTAAAGAAAAGAGACTTTATCTCAAGGGTTTTGGAAACTAGGGAGACCGATCCAAAGTACTTGAGAGACATGGTCCTAAATTTTATTGCAGCCGGCAAAGACACAACTGCTTCTGCTCTTTCATGGTTTTTTTATATGATGTGCAAGCATTTCGATATACAAGAAAAGATTGCACGGGAAGTTAGAGAAGCAACAGGTCTGAATAATACTTCAAGTATTGATGAACTTGCAGCCAACCTTAATCAAGAAGCTCTTAACAAAATGCAATATCTTCATGCAGCTTTGACTGAGACACTCAGGCTCTATCCTACGGTTCCATTGGATGCGAGAGTTTGTTTTTCTGATGATACTTGGCCAGACGGACTTAGTGTAAAAAAAGGGGAACTGATAGTATACCAACCTTATTCAATGGGTCGGATGGAGTTTATATGGGGTGATGATGCAGAAGAGTTTCGGCCAGAGAGATGGCTCGACAAAAATGGCAATTTCCAGGAAGAAAGCCCTTTCAAATTCATATCCTTCAATGCCGGTCCAAGAATTTGTCTAGGAAAAGAGTATAGTTACATTCAGTTGAAGATCTTTTCTGCTATGCTTATAAGTAACTACATATTCAAGGTTACTGATGAGAAGAAAGTTGTCAATTACAAGACGATGGTCACCCTCCATATTGATGGAGGTCTTCATGTTGATGCCTTTCCAAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

500

Amino Acids

57.6

Weight (kDa)

6.55

Isoelectric Point (pI)

28.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 46 - 486 1.3e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1391
Acc36I ACCTGC 1 cut(s) 300
Acc65I GGTACC 1 cut(s) 93
AccB1I GGYRCC 2 cut(s) 93, 560
AccI GTMKAC 1 cut(s) 1188
AciI CCGC 1 cut(s) 670
AclWI GGATC 3 cut(s) 224, 732, 839
AcoI YGGCCR 4 cut(s) 60, 74, 1148, 1250
AcsI RAATTY 3 cut(s) 874, 1304, 1332
AfaI GTAC 5 cut(s) 95, 179, 290, 399, 854
AfiI CCNNNNNNNGG 1 cut(s) 107
AjnI CCWGG 1 cut(s) 1284
AjuI GAANNNNNNNTTGG 4 cut(s) 503, 535, 618, 650
AluBI AGCT 6 cut(s) 47, 166, 467, 629, 1046, 1076
AluI AGCT 6 cut(s) 47, 166, 467, 629, 1046, 1076
Alw26I GTCTC 5 cut(s) 399, 801, 833, 855, 1079
AlwI GGATC 3 cut(s) 224, 732, 839
AoxI GGCC 4 cut(s) 60, 74, 1148, 1250
ApeKI GCWGC 5 cut(s) 145, 355, 884, 1025, 1073
ApoI RAATTY 3 cut(s) 874, 1304, 1332
AseI ATTAAT 1 cut(s) 743
Asp700I GAANNNNTTC 1 cut(s) 1245
Asp718I GGTACC 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 868, 1325
AsuHPI GGTGA 2 cut(s) 1241, 1444
AvaII GGWCC 2 cut(s) 868, 1325
BalI TGGCCA 1 cut(s) 1150
BanI GGYRCC 2 cut(s) 93, 560
BbsI GAAGAC 3 cut(s) 109, 374, 1466
BbvI GCAGC 5 cut(s) 132, 342, 896, 1037, 1085
BccI CCATC 6 cut(s) 317, 335, 1207, 1254, 1441, 1460
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 928, 962
BciT130I CCWGG 1 cut(s) 1286
BcoDI GTCTC 5 cut(s) 399, 801, 833, 855, 1079
BfaI CTAG 3 cut(s) 557, 834, 1340
BfuAI ACCTGC 1 cut(s) 300
BglII AGATCT 2 cut(s) 310, 1371
BisI GCNGC 5 cut(s) 146, 356, 885, 1026, 1074
BlsI GCNGC 5 cut(s) 147, 357, 886, 1027, 1075
BmcAI AGTACT 2 cut(s) 399, 854
Bme1390I CCNGG 1 cut(s) 1286
Bme18I GGWCC 2 cut(s) 868, 1325
BmgT120I GGNCC 2 cut(s) 868, 1325
BmiI GGNNCC 3 cut(s) 95, 562, 1110
BmrFI CCNGG 1 cut(s) 1286
BmsI GCATC 7 cut(s) 157, 367, 558, 607, 1108, 1225, 1474
BoxI GACNNNNGTC 1 cut(s) 1448
BpiI GAAGAC 3 cut(s) 109, 374, 1466
BpuEI CTTGAG 2 cut(s) 802, 877
BsaI GGTCTC 1 cut(s) 833
BsaJI CCNNGG 2 cut(s) 140, 519
BsaWI WCCGGW 1 cut(s) 594
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 2 cut(s) 887, 1322
BseBI CCWGG 1 cut(s) 1286
BseDI CCNNGG 2 cut(s) 140, 519
BseGI GGATG 3 cut(s) 346, 1123, 1218
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 3 cut(s) 153, 1074, 1105
BseXI GCAGC 5 cut(s) 132, 342, 896, 1037, 1085
BshFI GGCC 4 cut(s) 62, 76, 1150, 1252
BshNI GGYRCC 2 cut(s) 93, 560
BsiSI CCGG 5 cut(s) 77, 108, 595, 888, 1323
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 5 cut(s) 399, 801, 833, 855, 1079
BsmFI GGGAC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 300
BsnI GGCC 4 cut(s) 62, 76, 1150, 1252
Bso31I GGTCTC 1 cut(s) 833
Bsp143I GATC 6 cut(s) 229, 310, 663, 724, 844, 1371
BspACI CCGC 1 cut(s) 670
BspANI GGCC 4 cut(s) 62, 76, 1150, 1252
BspCNI CTCAG 3 cut(s) 154, 1075, 1104
BspLI GGNNCC 3 cut(s) 95, 562, 1110
BspMI ACCTGC 1 cut(s) 300
BspPI GGATC 3 cut(s) 224, 732, 839
BspT107I GGYRCC 2 cut(s) 93, 560
BspTNI GGTCTC 1 cut(s) 833
BsrFI RCCGGY 2 cut(s) 887, 1322
BssAI RCCGGY 2 cut(s) 887, 1322
BssECI CCNNGG 2 cut(s) 140, 519
BssMI GATC 6 cut(s) 229, 310, 663, 724, 844, 1371
BssNAI GTATAC 1 cut(s) 1189
BssT1I CCWWGG 2 cut(s) 140, 519
Bst1107I GTATAC 1 cut(s) 1189
Bst2UI CCWGG 1 cut(s) 1286
Bst4CI ACNGT 3 cut(s) 115, 226, 1108
Bst6I CTCTTC 1 cut(s) 1236
BstC8I GCNNGC 4 cut(s) 168, 172, 889, 941
BstDEI CTNAG 6 cut(s) 162, 401, 701, 1083, 1091, 1160
BstEII GGTNACC 1 cut(s) 1450
BstF5I GGATG 3 cut(s) 346, 1123, 1218
BstKTI GATC 6 cut(s) 232, 313, 666, 727, 847, 1374
BstMAI GTCTC 5 cut(s) 399, 801, 833, 855, 1079
BstMBI GATC 6 cut(s) 229, 310, 663, 724, 844, 1371
BstMWI GCNNNNNNNGC 1 cut(s) 626
BstNI CCWGG 1 cut(s) 1286
BstNSI RCATGY 2 cut(s) 174, 215
BstPAI GACNNNNGTC 1 cut(s) 1448
BstPI GGTNACC 1 cut(s) 1450
BstSCI CCNGG 1 cut(s) 1284
BstV1I GCAGC 5 cut(s) 132, 342, 896, 1037, 1085
BstV2I GAAGAC 3 cut(s) 109, 374, 1466
BstX2I RGATCY 3 cut(s) 229, 310, 1371
BstXI CCANNNNNNTGG 2 cut(s) 1260, 1466
BstYI RGATCY 3 cut(s) 229, 310, 1371
BstZ17I GTATAC 1 cut(s) 1189
BsuRI GGCC 4 cut(s) 62, 76, 1150, 1252
BtsCI GGATG 3 cut(s) 346, 1123, 1218
BtsI GCAGTG 2 cut(s) 15, 702
BtsIMutI CAGTG 3 cut(s) 15, 159, 702
BveI ACCTGC 1 cut(s) 300
Cac8I GCNNGC 4 cut(s) 168, 172, 889, 941
Cfr10I RCCGGY 2 cut(s) 887, 1322
Cfr13I GGNCC 2 cut(s) 868, 1325
Csp6I GTAC 5 cut(s) 94, 178, 289, 398, 853
CviAII CATG 7 cut(s) 171, 212, 565, 865, 918, 1070, 1478
CviQI GTAC 5 cut(s) 94, 178, 289, 398, 853
DdeI CTNAG 6 cut(s) 162, 401, 701, 1083, 1091, 1160
DpnI GATC 6 cut(s) 231, 312, 665, 726, 846, 1373
DpnII GATC 6 cut(s) 229, 310, 663, 724, 844, 1371
DraI TTTAAA 1 cut(s) 798
EaeI YGGCCR 4 cut(s) 60, 74, 1148, 1250
Eam1104I CTCTTC 1 cut(s) 1236
EarI CTCTTC 1 cut(s) 1236
Eco130I CCWWGG 2 cut(s) 140, 519
Eco31I GGTCTC 1 cut(s) 833
Eco32I GATATC 2 cut(s) 493, 652
Eco47I GGWCC 2 cut(s) 868, 1325
Eco91I GGTNACC 1 cut(s) 1450
EcoO65I GGTNACC 1 cut(s) 1450
EcoRII CCWGG 1 cut(s) 1284
EcoRV GATATC 2 cut(s) 493, 652
EcoT14I CCWWGG 2 cut(s) 140, 519
ErhI CCWWGG 2 cut(s) 140, 519
FaeI CATG 7 cut(s) 174, 215, 568, 868, 921, 1073, 1481
FalI AAGNNNNNCTT 6 cut(s) 618, 650, 659, 691, 1032, 1064
FaqI GGGAC 1 cut(s) 359
FatI CATG 7 cut(s) 170, 211, 564, 864, 917, 1069, 1477
FblI GTMKAC 1 cut(s) 1188
Fnu4HI GCNGC 5 cut(s) 146, 356, 885, 1026, 1074
FokI GGATG 3 cut(s) 353, 1130, 1225
Fsp4HI GCNGC 5 cut(s) 146, 356, 885, 1026, 1074
FspBI CTAG 3 cut(s) 557, 834, 1340
GluI GCNGC 5 cut(s) 146, 356, 885, 1026, 1074
HaeIII GGCC 4 cut(s) 62, 76, 1150, 1252
HapII CCGG 5 cut(s) 77, 108, 595, 888, 1323
Hin1II CATG 7 cut(s) 174, 215, 568, 868, 921, 1073, 1481
HinfI GANTC 5 cut(s) 193, 327, 482, 524, 538
HpaII CCGG 5 cut(s) 77, 108, 595, 888, 1323
HphI GGTGA 2 cut(s) 1241, 1444
Hpy166II GTNNAC 1 cut(s) 1189
Hpy188I TCNGA 6 cut(s) 310, 649, 778, 996, 1138, 1212
Hpy188III TCNNGA 6 cut(s) 197, 535, 570, 658, 676, 1040
Hpy8I GTNNAC 1 cut(s) 1189
HpyAV CCTTC 2 cut(s) 644, 1324
HpyCH4III ACNGT 3 cut(s) 115, 226, 1108
HpyF10VI GCNNNNNNNGC 1 cut(s) 626
HpyF3I CTNAG 6 cut(s) 162, 401, 701, 1083, 1091, 1160
Hsp92II CATG 7 cut(s) 174, 215, 568, 868, 921, 1073, 1481
KpnI GGTACC 1 cut(s) 97
KroI GCCGGC 1 cut(s) 887
KroNI GCCGGC 1 cut(s) 889
Kzo9I GATC 6 cut(s) 229, 310, 663, 724, 844, 1371
Lsp1109I GCAGC 5 cut(s) 132, 342, 896, 1037, 1085
LweI GCATC 7 cut(s) 157, 367, 558, 607, 1108, 1225, 1474
MaeI CTAG 3 cut(s) 557, 834, 1340
MaeIII GTNAC 6 cut(s) 469, 476, 1355, 1394, 1411, 1450
MalI GATC 6 cut(s) 231, 312, 665, 726, 846, 1373
MboI GATC 6 cut(s) 229, 310, 663, 724, 844, 1371
MflI RGATCY 3 cut(s) 229, 310, 1371
MlsI TGGCCA 1 cut(s) 1150
MluCI AATT 9 cut(s) 133, 456, 740, 772, 874, 1279, 1304, 1332, 1435
MluNI TGGCCA 1 cut(s) 1150
MmeI TCCRAC 1 cut(s) 1190
MnlI CCTC 3 cut(s) 108, 1463, 1466
Mox20I TGGCCA 1 cut(s) 1150
MroNI GCCGGC 1 cut(s) 887
MroXI GAANNNNTTC 1 cut(s) 1245
MscI TGGCCA 1 cut(s) 1150
MseI TTAA 4 cut(s) 743, 797, 1035, 1050
MslI CAYNNNNRTG 2 cut(s) 1464, 1482
Msp20I TGGCCA 1 cut(s) 1150
MspI CCGG 5 cut(s) 77, 108, 595, 888, 1323
MspR9I CCNGG 1 cut(s) 1286
Mva1269I GAATGC 1 cut(s) 300
MvaI CCWGG 1 cut(s) 1286
MwoI GCNNNNNNNGC 1 cut(s) 626
NaeI GCCGGC 1 cut(s) 889
NdeII GATC 6 cut(s) 229, 310, 663, 724, 844, 1371
NgoMIV GCCGGC 1 cut(s) 887
NlaIII CATG 7 cut(s) 174, 215, 568, 868, 921, 1073, 1481
NlaIV GGNNCC 3 cut(s) 95, 562, 1110
NmuCI GTSAC 2 cut(s) 476, 1450
NspI RCATGY 2 cut(s) 174, 215
PaeI GCATGC 1 cut(s) 174
PctI GAATGC 1 cut(s) 300
PdiI GCCGGC 1 cut(s) 889
PdmI GAANNNNTTC 1 cut(s) 1245
PfeI GAWTC 5 cut(s) 193, 327, 482, 524, 538
PflFI GACNNNGTC 1 cut(s) 866
PfoI TCCNGGA 1 cut(s) 1284
PkrI GCNGC 5 cut(s) 147, 357, 886, 1027, 1075
PshAI GACNNNNGTC 1 cut(s) 1448
PshBI ATTAAT 1 cut(s) 743
PsiI TTATAA 1 cut(s) 1391
Psp6I CCWGG 1 cut(s) 1284
PspEI GGTNACC 1 cut(s) 1450
PspGI CCWGG 1 cut(s) 1284
PspN4I GGNNCC 3 cut(s) 95, 562, 1110
PspPI GGNCC 2 cut(s) 868, 1325
PsrI GAACNNNNNNTAC 2 cut(s) 77, 109
PsuI RGATCY 3 cut(s) 229, 310, 1371
PsyI GACNNNGTC 1 cut(s) 866
RsaI GTAC 5 cut(s) 95, 179, 290, 399, 854
RsaNI GTAC 5 cut(s) 94, 178, 289, 398, 853
RseI CAYNNNNRTG 2 cut(s) 1464, 1482
SaqAI TTAA 4 cut(s) 743, 797, 1035, 1050
SatI GCNGC 5 cut(s) 146, 356, 885, 1026, 1074
Sau3AI GATC 6 cut(s) 229, 310, 663, 724, 844, 1371
Sau96I GGNCC 2 cut(s) 868, 1325
ScaI AGTACT 2 cut(s) 399, 854
ScrFI CCNGG 1 cut(s) 1286
SfaNI GCATC 7 cut(s) 157, 367, 558, 607, 1108, 1225, 1474
SinI GGWCC 2 cut(s) 868, 1325
SmiMI CAYNNNNRTG 2 cut(s) 1464, 1482
SmlI CTYRAG 2 cut(s) 817, 856
SmoI CTYRAG 2 cut(s) 817, 856
SphI GCATGC 1 cut(s) 174
Sse9I AATT 9 cut(s) 133, 456, 740, 772, 874, 1279, 1304, 1332, 1435
SsiI CCGC 1 cut(s) 670
SspI AATATT 1 cut(s) 794
SspMI CTAG 3 cut(s) 557, 834, 1340
StyD4I CCNGG 1 cut(s) 1284
StyI CCWWGG 2 cut(s) 140, 519
TaaI ACNGT 3 cut(s) 115, 226, 1108
TaqI TCGA 3 cut(s) 552, 948, 1266
TaqII GACCGA 1 cut(s) 857
TasI AATT 9 cut(s) 133, 456, 740, 772, 874, 1279, 1304, 1332, 1435
TatI WGTACW 3 cut(s) 177, 397, 852
TfiI GAWTC 5 cut(s) 193, 327, 482, 524, 538
Tru1I TTAA 4 cut(s) 743, 797, 1035, 1050
Tru9I TTAA 4 cut(s) 743, 797, 1035, 1050
TscAI CASTG 3 cut(s) 22, 166, 702
TseFI GTSAC 2 cut(s) 476, 1450
TseI GCWGC 5 cut(s) 145, 355, 884, 1025, 1073
Tsp45I GTSAC 2 cut(s) 476, 1450
TspDTI ATGAA 9 cut(s) 477, 524, 597, 626, 906, 1032, 1058, 1297, 1466
TspGWI ACGGA 1 cut(s) 1170
TspRI CASTG 3 cut(s) 22, 166, 702
Tth111I GACNNNGTC 1 cut(s) 866
VpaK11BI GGWCC 2 cut(s) 868, 1325
VspI ATTAAT 1 cut(s) 743
XapI RAATTY 3 cut(s) 874, 1304, 1332
XceI RCATGY 2 cut(s) 174, 215
XmiI GTMKAC 1 cut(s) 1188
XmnI GAANNNNTTC 1 cut(s) 1245
XspI CTAG 3 cut(s) 557, 834, 1340
ZrmI AGTACT 2 cut(s) 399, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.