Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006258

Physical Location & Seq

Genomic Coordinates Forward (+)

52993327 .. 52996114

Gene Structure 2788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0431800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGAACAATACAACATGTTTCATATATACTACAACAGTGAACTGTTTGTTGCTCAATCCCTTCAGGCCTAACTTGGGGACAGTTACACAAACACTAAAAATCCTCCACTATGATTATCCGGCCACACCCCATGCCAGAAGATTGAATGAGAAGAAAAAAATATACCACCCTGTTGCCGGAACTATCTTAAACCAACTGATCAACGTCCCTAGGCTGCACCATTACATGACTGAGCTTGCATGCAAATACAGAACTTACAGGTTGCTTGGCTTTTTCAGAAGTGAGGTTTACACCTCAGATCCTGCAAATGGATTGTATCACTACAACATTTTGTCTGATCTTGTGGGGGATGGAATCTTTGCTGTGGATGGGGAAAAATGGCAGCAACAAAGGAGGGCATCAAGCTCTGAGTTTTCAACCAATATGCTGAGAGACTTCGGCAGTGGAATATTCAATACCAATGCAGTGAAACTTGCTGGGATAATTTATGAAGCTGTAACCTGTGACCGAGCAATAGAGATCCAAGACTTGTTTATGAGATCATCTCTAGATTCAATCATCAAGATTCTACTTGATATTGAATTAGACACCATGTGTGGAACAAATGAAGAAGGTATCCGGTTTTCCAATGCGTTTGATGAAGCAAACGAAATTACCCTGTATCGGTATGTTGATTCCTTCTGGAAGGTAAAACGGTTCTTAAATATTGGATCTGAAGCAGTTCTAAGGAATAATATCAAAGTGGTAGATCAATTTGTGTATAAACTGATCAACAAGAAGCTTGAAACAGTCCACAGTTCAGAAGATGAGTCAACTACACTGGCTACCAATCTTTCGTGGTTTCTCTATGTGCTCTGCAATCATCGCCATATACAAAAAAATATTGCACAAGAAGTTAGAGAAGCAACAAGTCTGAATAATAGCTCAAGCATTGATGAACTTGCAGCCAGCCTTACTGAAGAAGCCCTTGACAAAATGCAATATCTCCATGCAGCTTTGACTGAGACACTCACTCTACCCTGCAATACCTGTGATGGATTTACGGTCCAAAAAGGAGATATGGTGGCATACCAACCTTATGCCATGGAATTTCTGTGGGGTGATGATGCAGAGGAGTTTAGGCCAGAGAGATGGCTCGACCATAAAGGCCTTTTCCAGCAAGAAAGCCCTTTTAAGTTCACAGCCTTCCAGAGTCTTCTCGAAGCCTCGCTTGTTGAAGATCTGAAATCGGTGATGAAGTGCGCTGCCAATCCTTTCGTAGAGGTCAACAGCGTCAGCGCCGTGTGCCTGAAATCGAGGAGTACTGAGGTGTTGTTGCTGGAGGAATCGGCGAGGCCAACCAGTCTTTTTAGAGAGTGGTTGATCGAGGGGAGAGGAAGAAGACGAGAGGTGGAGGGTCAAGAATACTTGAAGAACAAGATGACTTGTGTTATACCACATTTAGTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yippee-Mis18

Protein Analysis

483

Amino Acids

55.32

Weight (kDa)

5.73

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	116 - 267	3.5e-08	Cytochrome P450
p450	PF00067	273 - 396	2.3e-12	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27740
fragaria_vesca	FvH4_7g32220 FvH4_7g32220 FvH4_7g32220
malus_domestica	MD01G1224800.v1.1 MD07G1295400.v1.1
prunus_persica	Prupe.5G198400_v2.0.a1 Prupe.5G198400_v2.0.a1 Prupe.5G198400_v2.0.a1 Prupe.5G198400_v2.0.a1 Prupe.5G198400_v2.0.a1
pyrus_communis	pycom01g23340 pycom07g26800
rosa_chinensis	RchiOBHm_Chr1g0381851 RchiOBHm_Chr1g0381861
rosa_laevigata	RLG00000026203
rosa_multiflora	Rmu_sc0008418.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278370
rosa_rugosa	Rorug01G0431800 Rorug01G0431900
rosa_samantha	Rh1AG455000 Rh1BG412200 Rh1CG426900 Rh1DG444500
rosa_wichuraiana	Rw0G013380 Rw1G041400 Rw1G041450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	293, 514, 718
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	1088
AcuI	CTGAAG	3 cut(s)	46, 735, 978
AdeI	CACNNNGTG	1 cut(s)	594
AfaI	GTAC	1 cut(s)	1303
AfiI	CCNNNNNNNGG	4 cut(s)	74, 176, 308, 663
AflIII	ACRYGT	1 cut(s)	14
AgsI	TTSAA	8 cut(s)	145, 417, 454, 555, 581, 785, 1217, 1411
AluBI	AGCT	6 cut(s)	235, 405, 494, 781, 924, 995
AluI	AGCT	6 cut(s)	235, 405, 494, 781, 924, 995
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	2 cut(s)	426, 998
AlwI	GGATC	3 cut(s)	293, 514, 718
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	5 cut(s)	65, 120, 1121, 1147, 1334
ApeKI	GCWGC	5 cut(s)	214, 382, 944, 992, 1244
ApoI	RAATTY	1 cut(s)	1088
Asp700I	GAANNNNTTC	1 cut(s)	720
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	2 cut(s)	1244, 1280
AspS9I	GGNCC	1 cut(s)	1045
AsuHPI	GGTGA	2 cut(s)	1112, 1243
AvaII	GGWCC	1 cut(s)	1045
AvrII	CCTAGG	1 cut(s)	209
BbsI	GAAGAC	2 cut(s)	1187, 1387
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	5 cut(s)	201, 394, 956, 1004, 1231
BccI	CCATC	4 cut(s)	344, 362, 1028, 1125
BceAI	ACGGC	1 cut(s)	1265
BciVI	GTATCC	1 cut(s)	626
BclI	TGATCA	2 cut(s)	198, 768
BcoDI	GTCTC	2 cut(s)	426, 998
BfaI	CTAG	2 cut(s)	210, 548
BfoI	RGCGCY	1 cut(s)	1281
BfuI	GTATCC	1 cut(s)	626
BglII	AGATCT	1 cut(s)	1219
BisI	GCNGC	5 cut(s)	215, 383, 945, 993, 1245
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	5 cut(s)	216, 384, 946, 994, 1246
BmcAI	AGTACT	1 cut(s)	1303
Bme18I	GGWCC	1 cut(s)	1045
BmgT120I	GGNCC	1 cut(s)	1045
BmsI	GCATC	2 cut(s)	407, 1096
BpiI	GAAGAC	2 cut(s)	1187, 1387
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
BpmI	CTGGAG	1 cut(s)	1340
BpuEI	CTTGAG	1 cut(s)	910
BsaJI	CCNNGG	2 cut(s)	209, 1083
BsaWI	WCCGGW	1 cut(s)	618
BsaXI	ACNNNNNCTCC	2 cut(s)	1047, 1077
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 176, 308, 663
Bse1I	ACTGG	2 cut(s)	825, 1341
BseDI	CCNNGG	2 cut(s)	209, 1083
BseGI	GGATG	2 cut(s)	355, 373
BseLI	CCNNNNNNNGG	4 cut(s)	74, 176, 308, 663
BseMII	CTCAG	6 cut(s)	222, 309, 399, 419, 993, 1296
BseNI	ACTGG	2 cut(s)	825, 1341
BseRI	GAGGAG	2 cut(s)	1127, 1312
BseXI	GCAGC	5 cut(s)	201, 394, 956, 1004, 1231
BseYI	CCCAGC	1 cut(s)	476
BsgI	GTGCAG	1 cut(s)	200
BshFI	GGCC	5 cut(s)	67, 122, 1123, 1149, 1336
BsiHKAI	GWGCWC	1 cut(s)	855
BsiSI	CCGG	3 cut(s)	119, 177, 619
BslFI	GGGAC	2 cut(s)	91, 191
BslI	CCNNNNNNNGG	4 cut(s)	74, 176, 308, 663
BsmAI	GTCTC	2 cut(s)	426, 998
BsmFI	GGGAC	2 cut(s)	91, 191
BsnI	GGCC	5 cut(s)	67, 122, 1123, 1149, 1336
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp19I	CCATGG	1 cut(s)	1083
BspANI	GGCC	5 cut(s)	67, 122, 1123, 1149, 1336
BspCNI	CTCAG	6 cut(s)	223, 308, 400, 420, 994, 1297
BspPI	GGATC	3 cut(s)	293, 514, 718
BsrI	ACTGG	2 cut(s)	825, 1341
BssECI	CCNNGG	2 cut(s)	209, 1083
BssT1I	CCWWGG	2 cut(s)	209, 1083
Bst4CI	ACNGT	7 cut(s)	37, 44, 82, 696, 790, 797, 1045
BstC8I	GCNNGC	3 cut(s)	237, 241, 949
BstDEI	CTNAG	7 cut(s)	231, 295, 408, 428, 725, 1002, 1305
BstDSI	CCRYGG	1 cut(s)	1083
BstF5I	GGATG	2 cut(s)	355, 373
BstH2I	RGCGCY	1 cut(s)	1281
BstHHI	GCGC	2 cut(s)	1244, 1280
BstMAI	GTCTC	2 cut(s)	426, 998
BstMWI	GCNNNNNNNGC	2 cut(s)	864, 1284
BstNSI	RCATGY	2 cut(s)	18, 243
BstV1I	GCAGC	5 cut(s)	201, 394, 956, 1004, 1231
BstV2I	GAAGAC	2 cut(s)	1187, 1387
BstX2I	RGATCY	4 cut(s)	298, 519, 710, 1219
BstXI	CCANNNNNNTGG	1 cut(s)	1131
BstYI	RGATCY	4 cut(s)	298, 519, 710, 1219
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	5 cut(s)	67, 122, 1123, 1149, 1336
BtgI	CCRYGG	1 cut(s)	1083
BtgZI	GCGATG	1 cut(s)	848
BtsCI	GGATG	2 cut(s)	355, 373
BtsI	GCAGTG	2 cut(s)	448, 471
BtsIMutI	CAGTG	4 cut(s)	42, 448, 471, 818
Cac8I	GCNNGC	3 cut(s)	237, 241, 949
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	2 cut(s)	1244, 1280
Cfr13I	GGNCC	1 cut(s)	1045
CseI	GACGC	1 cut(s)	1261
Csp6I	GTAC	1 cut(s)	1302
CviAII	CATG	7 cut(s)	15, 131, 226, 240, 592, 989, 1084
CviQI	GTAC	1 cut(s)	1302
DdeI	CTNAG	7 cut(s)	231, 295, 408, 428, 725, 1002, 1305
DraIII	CACNNNGTG	1 cut(s)	594
EaeI	YGGCCR	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	209, 1083
Eco147I	AGGCCT	2 cut(s)	67, 1149
Eco47I	GGWCC	1 cut(s)	1045
Eco57I	CTGAAG	3 cut(s)	46, 735, 978
EcoT14I	CCWWGG	2 cut(s)	209, 1083
ErhI	CCWWGG	2 cut(s)	209, 1083
FaeI	CATG	7 cut(s)	18, 134, 229, 243, 595, 992, 1087
FalI	AAGNNNNNCTT	4 cut(s)	951, 983, 1194, 1226
FaqI	GGGAC	2 cut(s)	91, 191
FatI	CATG	7 cut(s)	14, 130, 225, 239, 591, 988, 1083
FbaI	TGATCA	2 cut(s)	198, 768
Fnu4HI	GCNGC	5 cut(s)	215, 383, 945, 993, 1245
FokI	GGATG	2 cut(s)	362, 380
Fsp4HI	GCNGC	5 cut(s)	215, 383, 945, 993, 1245
FspBI	CTAG	2 cut(s)	210, 548
GlaI	GCGC	2 cut(s)	1243, 1279
GluI	GCNGC	5 cut(s)	215, 383, 945, 993, 1245
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	1340
HaeII	RGCGCY	1 cut(s)	1281
HaeIII	GGCC	5 cut(s)	67, 122, 1123, 1149, 1336
HapII	CCGG	3 cut(s)	119, 177, 619
HgaI	GACGC	1 cut(s)	1261
HhaI	GCGC	2 cut(s)	1244, 1280
Hin1II	CATG	7 cut(s)	18, 134, 229, 243, 595, 992, 1087
Hin6I	GCGC	2 cut(s)	1242, 1278
HinP1I	GCGC	2 cut(s)	1242, 1278
HincII	GTYRAC	2 cut(s)	813, 1267
HindII	GTYRAC	2 cut(s)	813, 1267
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	7 cut(s)	354, 551, 565, 674, 809, 1192, 1325
HpaII	CCGG	3 cut(s)	119, 177, 619
HphI	GGTGA	2 cut(s)	1112, 1243
Hpy166II	GTNNAC	6 cut(s)	40, 289, 793, 813, 1179, 1267
Hpy188I	TCNGA	8 cut(s)	278, 298, 337, 409, 715, 802, 915, 1224
Hpy188III	TCNNGA	6 cut(s)	548, 562, 682, 1189, 1199, 1400
Hpy8I	GTNNAC	6 cut(s)	40, 289, 793, 813, 1179, 1267
HpyAV	CCTTC	5 cut(s)	70, 605, 679, 688, 1195
HpyCH4III	ACNGT	7 cut(s)	37, 44, 82, 696, 790, 797, 1045
HpyCH4IV	ACGT	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	2 cut(s)	864, 1284
HpyF3I	CTNAG	7 cut(s)	231, 295, 408, 428, 725, 1002, 1305
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	7 cut(s)	18, 134, 229, 243, 595, 992, 1087
HspAI	GCGC	2 cut(s)	1242, 1278
Ksp22I	TGATCA	2 cut(s)	198, 768
Lsp1109I	GCAGC	5 cut(s)	201, 394, 956, 1004, 1231
LweI	GCATC	2 cut(s)	407, 1096
MaeI	CTAG	2 cut(s)	210, 548
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	3 cut(s)	82, 496, 503
MflI	RGATCY	4 cut(s)	298, 519, 710, 1219
MhlI	GDGCHC	1 cut(s)	855
MluCI	AATT	5 cut(s)	483, 581, 651, 752, 1088
MlyI	GAGTC	2 cut(s)	818, 1201
MroXI	GAANNNNTTC	1 cut(s)	720
MseI	TTAA	3 cut(s)	188, 701, 1173
MspI	CCGG	3 cut(s)	119, 177, 619
MwoI	GCNNNNNNNGC	2 cut(s)	864, 1284
NcoI	CCATGG	1 cut(s)	1083
NlaIII	CATG	7 cut(s)	18, 134, 229, 243, 595, 992, 1087
NmuCI	GTSAC	1 cut(s)	503
NspI	RCATGY	2 cut(s)	18, 243
PaeI	GCATGC	1 cut(s)	243
PceI	AGGCCT	2 cut(s)	67, 1149
PciI	ACATGT	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	5 cut(s)	354, 551, 565, 674, 1325
PkrI	GCNGC	5 cut(s)	216, 384, 946, 994, 1246
PleI	GAGTC	2 cut(s)	817, 1200
PpsI	GAGTC	2 cut(s)	817, 1200
PscI	ACATGT	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	476
PspPI	GGNCC	1 cut(s)	1045
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	4 cut(s)	298, 519, 710, 1219
RsaI	GTAC	1 cut(s)	1303
RsaNI	GTAC	1 cut(s)	1302
SaqAI	TTAA	3 cut(s)	188, 701, 1173
SatI	GCNGC	5 cut(s)	215, 383, 945, 993, 1245
Sau96I	GGNCC	1 cut(s)	1045
ScaI	AGTACT	1 cut(s)	1303
SchI	GAGTC	2 cut(s)	818, 1201
SduI	GDGCHC	1 cut(s)	855
SfaNI	GCATC	2 cut(s)	407, 1096
SinI	GGWCC	1 cut(s)	1045
SmlI	CTYRAG	1 cut(s)	925
SmoI	CTYRAG	1 cut(s)	925
SphI	GCATGC	1 cut(s)	243
Sse9I	AATT	5 cut(s)	483, 581, 651, 752, 1088
SseBI	AGGCCT	2 cut(s)	67, 1149
SspI	AATATT	3 cut(s)	450, 706, 883
SspMI	CTAG	2 cut(s)	210, 548
StuI	AGGCCT	2 cut(s)	67, 1149
StyI	CCWWGG	2 cut(s)	209, 1083
TaaI	ACNGT	7 cut(s)	37, 44, 82, 696, 790, 797, 1045
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	4 cut(s)	1137, 1200, 1295, 1365
TaqII	GACCGA	1 cut(s)	522
TasI	AATT	5 cut(s)	483, 581, 651, 752, 1088
TatI	WGTACW	1 cut(s)	1301
TfiI	GAWTC	5 cut(s)	354, 551, 565, 674, 1325
Tru1I	TTAA	3 cut(s)	188, 701, 1173
Tru9I	TTAA	3 cut(s)	188, 701, 1173
TscAI	CASTG	4 cut(s)	42, 448, 471, 825
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	5 cut(s)	214, 382, 944, 992, 1244
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	7 cut(s)	10, 17, 504, 621, 654, 951, 1250
TspRI	CASTG	4 cut(s)	42, 448, 471, 825
VpaK11BI	GGWCC	1 cut(s)	1045
XapI	RAATTY	1 cut(s)	1088
XbaI	TCTAGA	1 cut(s)	547
XceI	RCATGY	2 cut(s)	18, 243
XmaJI	CCTAGG	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	2 cut(s)	210, 548
ZrmI	AGTACT	1 cut(s)	1303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.