Rroxscaffold_4G00278370

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006258
Physical Location & Seq
Forward (+)
1408567 .. 1409556
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278370.1

Sequence Viewer

Length: 318 bp
ATGGCGGAATATGGTGGCAACCCCTTCTTCAGTTGCAGGAGCTGCAAAAACCCTCTGGCTCTGCACGAAGATCTTCTGTCAAAAAAATATCGGGCAAAATCTGGGGCAGCATACATGTTCTCTCATGCAATGAACGTCATTGTGGGACAAAAGGAGGATAGGAAGTTGATTACTGGTGTTTTTTCTGTTGCTGACATATATTGCAGCAATTGTGGTCAAGAATTAGGATGGAAGTATGTTCAAGCTTATGATAGGCTGCAGATGTACAAGGAAGGCAAGTTTATAATCGAGAAAGCAAAAATTCTCAAGGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

105

Amino Acids

12.03

Weight (kDa)

9.03

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 10 - 101 1.2e-13 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 13
AfaI GTAC 2 cut(s) 266, 314
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 2 cut(s) 42, 245
AluI AGCT 2 cut(s) 42, 245
AlwNI CAGNNNCTG 1 cut(s) 42
ApeKI GCWGC 4 cut(s) 42, 107, 204, 256
ApoI RAATTY 1 cut(s) 300
Asp700I GAANNNNTTC 1 cut(s) 72
BbvI GCAGC 4 cut(s) 29, 119, 216, 243
BccI CCATC 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 257
BglII AGATCT 1 cut(s) 70
BisI GCNGC 4 cut(s) 43, 108, 205, 257
BlsI GCNGC 4 cut(s) 44, 109, 206, 258
BmcAI AGTACT 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 135
BseGI GGATG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 4 cut(s) 29, 119, 216, 243
BsgI GTGCAG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 159
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 1 cut(s) 5
BspMAI CTGCAG 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 135
BsrGI TGTACA 1 cut(s) 264
BsrI ACTGG 1 cut(s) 178
BssMI GATC 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 264
BstF5I GGATG 1 cut(s) 233
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 257
BstV1I GCAGC 4 cut(s) 29, 119, 216, 243
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BtsCI GGATG 1 cut(s) 233
CaiI CAGNNNCTG 1 cut(s) 42
Csp6I GTAC 2 cut(s) 265, 313
CviAII CATG 2 cut(s) 115, 125
CviJI RGCY 4 cut(s) 42, 59, 245, 256
CviKI_1 RGCY 4 cut(s) 42, 59, 245, 256
CviQI GTAC 2 cut(s) 265, 313
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 13
FaeI CATG 2 cut(s) 118, 128
FaiI YATR 9 cut(s) 12, 112, 116, 126, 197, 199, 237, 249, 284
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 114, 124
Fnu4HI GCNGC 4 cut(s) 43, 108, 205, 257
FokI GGATG 1 cut(s) 240
Fsp4HI GCNGC 4 cut(s) 43, 108, 205, 257
GluI GCNGC 4 cut(s) 43, 108, 205, 257
Hin1II CATG 2 cut(s) 118, 128
HindIII AAGCTT 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 218, 289
HpyAV CCTTC 2 cut(s) 34, 266
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 36, 45, 64, 128, 204, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 2 cut(s) 118, 128
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 4 cut(s) 22, 41, 87, 159
Lsp1109I GCAGC 4 cut(s) 29, 119, 216, 243
MaeII ACGT 1 cut(s) 135
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 3 cut(s) 19, 65, 80
MfeI CAATTG 1 cut(s) 208
MflI RGATCY 1 cut(s) 70
MluCI AATT 3 cut(s) 208, 221, 300
MnlI CCTC 2 cut(s) 63, 148
MroXI GAANNNNTTC 1 cut(s) 72
MunI CAATTG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 118, 128
NspI RCATGY 1 cut(s) 118
PciI ACATGT 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 72
PkrI GCNGC 4 cut(s) 44, 109, 206, 258
PscI ACATGT 1 cut(s) 114
PsiI TTATAA 1 cut(s) 284
PstI CTGCAG 1 cut(s) 261
PstNI CAGNNNCTG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 2 cut(s) 266, 314
RsaNI GTAC 2 cut(s) 265, 313
SatI GCNGC 4 cut(s) 43, 108, 205, 257
Sau3AI GATC 1 cut(s) 70
ScaI AGTACT 1 cut(s) 314
SetI ASST 3 cut(s) 44, 138, 247
SfcI CTRYAG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 3 cut(s) 208, 221, 300
SsiI CCGC 1 cut(s) 5
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 288
TasI AATT 3 cut(s) 208, 221, 300
TatI WGTACW 2 cut(s) 264, 312
TseI GCWGC 4 cut(s) 42, 107, 204, 256
TspDTI ATGAA 1 cut(s) 146
XapI RAATTY 1 cut(s) 300
XceI RCATGY 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.