Rmu_sc0008418.1_g000001

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008418.1
OG0006258
Physical Location & Seq
Forward (+)
1 .. 3578
3578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008418.1_g000001.1.cds

Sequence Viewer

Length: 325 bp
tttaatggcggaatatggtggcaaccccttcttcagctgcaggagctgcaaaaaccctctggctctgcacgaagatcttctgtcaaaaaaatatcgggcaaaatctggggcagcagcatacatgttctctcatgcaatgaacgtcattgtgggacaaaaggaggataggaagttgattactggtgttttttctgttgctgacatatattgcagcaattgtggtcaagaattaggatggaagtatgttcaagcttatgatccgcggcagatgcacaaggaaggcaagtttataatcgagagagcaaaaattctcaaggagtactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

107

Amino Acids

12.2

Weight (kDa)

9.07

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AccII CGCG 1 cut(s) 263
AciI CCGC 3 cut(s) 9, 261, 263
AclWI GGATC 1 cut(s) 252
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 17
AfaI GTAC 1 cut(s) 321
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 1 cut(s) 249
AluBI AGCT 3 cut(s) 37, 46, 252
AluI AGCT 3 cut(s) 37, 46, 252
AlwI GGATC 1 cut(s) 252
AlwNI CAGNNNCTG 1 cut(s) 46
ApeKI GCWGC 5 cut(s) 37, 46, 111, 114, 211
ApoI RAATTY 1 cut(s) 307
Asp700I GAANNNNTTC 1 cut(s) 76
BbvI GCAGC 5 cut(s) 24, 33, 123, 126, 223
BccI CCATC 1 cut(s) 229
BfmI CTRYAG 1 cut(s) 38
BglII AGATCT 1 cut(s) 74
BisI GCNGC 6 cut(s) 38, 47, 112, 115, 212, 264
BlsI GCNGC 6 cut(s) 39, 48, 113, 116, 213, 265
BmcAI AGTACT 1 cut(s) 321
BmsI GCATC 1 cut(s) 259
BpuEI CTTGAG 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 240
BseMI GCAATG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 185
BseXI GCAGC 5 cut(s) 24, 33, 123, 126, 223
BsgI GTGCAG 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 74, 257
BspACI CCGC 3 cut(s) 9, 261, 263
BspFNI CGCG 1 cut(s) 263
BspMAI CTGCAG 1 cut(s) 42
BspPI GGATC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 142
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 2 cut(s) 74, 257
BstAPI GCANNNNNTGC 1 cut(s) 46
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 263
BstKTI GATC 2 cut(s) 77, 260
BstMBI GATC 2 cut(s) 74, 257
BstMWI GCNNNNNNNGC 3 cut(s) 43, 46, 269
BstNSI RCATGY 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 38
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 5 cut(s) 24, 33, 123, 126, 223
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 1 cut(s) 240
CaiI CAGNNNCTG 1 cut(s) 46
Cfr42I CCGCGG 1 cut(s) 264
Csp6I GTAC 1 cut(s) 320
CviAII CATG 2 cut(s) 122, 132
CviJI RGCY 4 cut(s) 37, 46, 63, 252
CviKI_1 RGCY 4 cut(s) 37, 46, 63, 252
CviQI GTAC 1 cut(s) 320
DpnI GATC 2 cut(s) 76, 259
DpnII GATC 2 cut(s) 74, 257
EciI GGCGGA 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 17
FaeI CATG 2 cut(s) 125, 135
FaiI YATR 9 cut(s) 16, 119, 123, 133, 204, 206, 244, 256, 291
FaqI GGGAC 1 cut(s) 166
FatI CATG 2 cut(s) 121, 131
Fnu4HI GCNGC 6 cut(s) 38, 47, 112, 115, 212, 264
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 6 cut(s) 38, 47, 112, 115, 212, 264
GluI GCNGC 6 cut(s) 38, 47, 112, 115, 212, 264
Hin1II CATG 2 cut(s) 125, 135
HindIII AAGCTT 1 cut(s) 250
Hpy188III TCNNGA 2 cut(s) 225, 296
HpyAV CCTTC 2 cut(s) 38, 273
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 6 cut(s) 40, 49, 68, 135, 211, 272
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 46, 269
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 2 cut(s) 125, 135
KspI CCGCGG 1 cut(s) 264
Kzo9I GATC 2 cut(s) 74, 257
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 4 cut(s) 26, 45, 91, 166
Lsp1109I GCAGC 5 cut(s) 24, 33, 123, 126, 223
LweI GCATC 1 cut(s) 259
MaeII ACGT 1 cut(s) 142
MalI GATC 2 cut(s) 76, 259
MboI GATC 2 cut(s) 74, 257
MboII GAAGA 3 cut(s) 23, 69, 84
MfeI CAATTG 1 cut(s) 215
MflI RGATCY 1 cut(s) 74
MluCI AATT 3 cut(s) 215, 228, 307
MnlI CCTC 2 cut(s) 67, 155
MroXI GAANNNNTTC 1 cut(s) 76
MseI TTAA 1 cut(s) 3
MspA1I CMGCKG 2 cut(s) 37, 263
MunI CAATTG 1 cut(s) 215
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 3 cut(s) 43, 46, 269
NdeII GATC 2 cut(s) 74, 257
NlaIII CATG 2 cut(s) 125, 135
NspI RCATGY 1 cut(s) 125
PciI ACATGT 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 76
PkrI GCNGC 6 cut(s) 39, 48, 113, 116, 213, 265
PscI ACATGT 1 cut(s) 121
PsiI TTATAA 1 cut(s) 291
PstI CTGCAG 1 cut(s) 42
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
SacII CCGCGG 1 cut(s) 264
SaqAI TTAA 1 cut(s) 3
SatI GCNGC 6 cut(s) 38, 47, 112, 115, 212, 264
Sau3AI GATC 2 cut(s) 74, 257
ScaI AGTACT 1 cut(s) 321
SetI ASST 4 cut(s) 39, 48, 145, 254
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 38
Sfr303I CCGCGG 1 cut(s) 264
SgrBI CCGCGG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 3 cut(s) 215, 228, 307
SsiI CCGC 3 cut(s) 9, 261, 263
TaiI ACGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 295
TasI AATT 3 cut(s) 215, 228, 307
TatI WGTACW 1 cut(s) 319
TauI GCSGC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 3
Tru9I TTAA 1 cut(s) 3
TseI GCWGC 5 cut(s) 37, 46, 111, 114, 211
TspDTI ATGAA 1 cut(s) 153
XapI RAATTY 1 cut(s) 307
XceI RCATGY 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 76
ZrmI AGTACT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.