Rh1AG455000

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006258
Physical Location & Seq
Reverse (-)
67377444 .. 67377864
421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG455000.1

Sequence Viewer

Length: 318 bp
ATGGCGGAATATGGTGGCAACCCCTTCTTCAGCTGCAGGAGCTGCAAAAACCCTCTGGCTCTGCACGAAGATCTTCTGTCAAAAAAATATTGGGCAAAATCTGGGGCAGCATACATGTTCTCTCATGCAATGAACGTCATTGTGGGACAAAAGGAGGACAGGAAGTTGATGACTGGTGTTTTTTCTGTTGCTGACATATATTGCAGCAATTGTGGTCAAGAATTAGGATGGAAGTATGTTCAAGCTTATGATCCGCGGCAGATGCACAAGGAAGGCAAGTTTATAATCGAGAGAGCAAAAATTCTCAAGGTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

105

Amino Acids

12.04

Weight (kDa)

9.06

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 10 - 102 1.2e-12 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AccII CGCG 1 cut(s) 256
AciI CCGC 3 cut(s) 5, 254, 256
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 13
AfaI GTAC 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 3 cut(s) 33, 42, 245
AluI AGCT 3 cut(s) 33, 42, 245
AlwI GGATC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 42
ApeKI GCWGC 4 cut(s) 33, 42, 107, 204
ApoI RAATTY 1 cut(s) 300
Asp700I GAANNNNTTC 1 cut(s) 72
BbvI GCAGC 4 cut(s) 20, 29, 119, 216
BccI CCATC 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 34
BglII AGATCT 1 cut(s) 70
BisI GCNGC 5 cut(s) 34, 43, 108, 205, 257
BlsI GCNGC 5 cut(s) 35, 44, 109, 206, 258
BmsI GCATC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 4 cut(s) 20, 29, 119, 216
BsgI GTGCAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 256
BslFI GGGAC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 70, 250
BspACI CCGC 3 cut(s) 5, 254, 256
BspFNI CGCG 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 38
BspPI GGATC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 2 cut(s) 70, 250
BstAPI GCANNNNNTGC 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 256
BstKTI GATC 2 cut(s) 73, 253
BstMBI GATC 2 cut(s) 70, 250
BstMWI GCNNNNNNNGC 3 cut(s) 39, 42, 262
BstNSI RCATGY 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 34
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 4 cut(s) 20, 29, 119, 216
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 233
CaiI CAGNNNCTG 1 cut(s) 42
Cfr42I CCGCGG 1 cut(s) 257
Csp6I GTAC 1 cut(s) 313
CviAII CATG 2 cut(s) 115, 125
CviJI RGCY 4 cut(s) 33, 42, 59, 245
CviKI_1 RGCY 4 cut(s) 33, 42, 59, 245
CviQI GTAC 1 cut(s) 313
DpnI GATC 2 cut(s) 72, 252
DpnII GATC 2 cut(s) 70, 250
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 13
FaeI CATG 2 cut(s) 118, 128
FaiI YATR 9 cut(s) 12, 112, 116, 126, 197, 199, 237, 249, 284
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 114, 124
Fnu4HI GCNGC 5 cut(s) 34, 43, 108, 205, 257
FokI GGATG 1 cut(s) 240
Fsp4HI GCNGC 5 cut(s) 34, 43, 108, 205, 257
GluI GCNGC 5 cut(s) 34, 43, 108, 205, 257
Hin1II CATG 2 cut(s) 118, 128
HindIII AAGCTT 1 cut(s) 243
Hpy166II GTNNAC 1 cut(s) 313
Hpy188III TCNNGA 2 cut(s) 218, 289
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 34, 266
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 36, 45, 64, 128, 204, 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 42, 262
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 2 cut(s) 118, 128
KspI CCGCGG 1 cut(s) 257
Kzo9I GATC 2 cut(s) 70, 250
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 5 cut(s) 22, 41, 87, 145, 159
Lsp1109I GCAGC 4 cut(s) 20, 29, 119, 216
LweI GCATC 1 cut(s) 252
MaeII ACGT 1 cut(s) 135
MalI GATC 2 cut(s) 72, 252
MboI GATC 2 cut(s) 70, 250
MboII GAAGA 3 cut(s) 19, 65, 80
MfeI CAATTG 1 cut(s) 208
MflI RGATCY 1 cut(s) 70
MluCI AATT 3 cut(s) 208, 221, 300
MnlI CCTC 2 cut(s) 63, 148
MroXI GAANNNNTTC 1 cut(s) 72
MspA1I CMGCKG 2 cut(s) 33, 256
MunI CAATTG 1 cut(s) 208
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 3 cut(s) 39, 42, 262
NdeII GATC 2 cut(s) 70, 250
NlaIII CATG 2 cut(s) 118, 128
NspI RCATGY 1 cut(s) 118
PciI ACATGT 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 72
PkrI GCNGC 5 cut(s) 35, 44, 109, 206, 258
PscI ACATGT 1 cut(s) 114
PsiI TTATAA 1 cut(s) 284
PstI CTGCAG 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SacII CCGCGG 1 cut(s) 257
SatI GCNGC 5 cut(s) 34, 43, 108, 205, 257
Sau3AI GATC 2 cut(s) 70, 250
SetI ASST 5 cut(s) 35, 44, 138, 247, 312
SfaNI GCATC 1 cut(s) 252
SfcI CTRYAG 1 cut(s) 34
Sfr303I CCGCGG 1 cut(s) 257
SgrBI CCGCGG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 3 cut(s) 208, 221, 300
SsiI CCGC 3 cut(s) 5, 254, 256
SspI AATATT 1 cut(s) 89
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 288
TasI AATT 3 cut(s) 208, 221, 300
TatI WGTACW 1 cut(s) 312
TauI GCSGC 1 cut(s) 259
TseI GCWGC 4 cut(s) 33, 42, 107, 204
TspDTI ATGAA 1 cut(s) 146
XapI RAATTY 1 cut(s) 300
XceI RCATGY 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.