Rw0G013380

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00600
OG0006258
Physical Location & Seq
Reverse (-)
42144 .. 42555
412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013380.1

Sequence Viewer

Length: 321 bp
ATGGCGGAATATGGTGGCAACCCCTTCTTCAGCTGCAGGAGCTGCAAAAACCCTCTGGCTCTGCACGAAGATCTTCTGTCAAAAAAATATTGGGCAAAATCTGGGGCAGCAGCATACATGTTCTCTCATGCAATGAACGTCATTGTGGGACAAAAGGAGGATAGGAAGTTGATTACTGGTGTTTTTTCTGTTGCTGACATATATTGCAGCAATTGTGGTCAAGAATTAGGATGGAAGTATGTTCAAGCTTATGATCCGCGGCAGATGCACAAGGAAGGCAAGTTTATAATCGAGAGAGCAAAAATTCTCAAGGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

106

Amino Acids

12.12

Weight (kDa)

8.88

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 10 - 102 2.8e-12 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AccII CGCG 1 cut(s) 259
AciI CCGC 3 cut(s) 5, 257, 259
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 303
AcuI CTGAAG 1 cut(s) 13
AfaI GTAC 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 1 cut(s) 245
AluBI AGCT 3 cut(s) 33, 42, 248
AluI AGCT 3 cut(s) 33, 42, 248
AlwI GGATC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 42
ApeKI GCWGC 5 cut(s) 33, 42, 107, 110, 207
ApoI RAATTY 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 72
BbvI GCAGC 5 cut(s) 20, 29, 119, 122, 219
BccI CCATC 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 34
BglII AGATCT 1 cut(s) 70
BisI GCNGC 6 cut(s) 34, 43, 108, 111, 208, 260
BlsI GCNGC 6 cut(s) 35, 44, 109, 112, 209, 261
BmcAI AGTACT 1 cut(s) 317
BmsI GCATC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 236
BseMI GCAATG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 5 cut(s) 20, 29, 119, 122, 219
BsgI GTGCAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 259
BslFI GGGAC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 70, 253
BspACI CCGC 3 cut(s) 5, 257, 259
BspFNI CGCG 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 38
BspPI GGATC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 2 cut(s) 70, 253
BstAPI GCANNNNNTGC 1 cut(s) 42
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 236
BstFNI CGCG 1 cut(s) 259
BstKTI GATC 2 cut(s) 73, 256
BstMBI GATC 2 cut(s) 70, 253
BstMWI GCNNNNNNNGC 3 cut(s) 39, 42, 265
BstNSI RCATGY 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 34
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 5 cut(s) 20, 29, 119, 122, 219
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 257
BtsCI GGATG 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 42
Cfr42I CCGCGG 1 cut(s) 260
Csp6I GTAC 1 cut(s) 316
CviAII CATG 2 cut(s) 118, 128
CviJI RGCY 4 cut(s) 33, 42, 59, 248
CviKI_1 RGCY 4 cut(s) 33, 42, 59, 248
CviQI GTAC 1 cut(s) 316
DpnI GATC 2 cut(s) 72, 255
DpnII GATC 2 cut(s) 70, 253
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 13
FaeI CATG 2 cut(s) 121, 131
FaiI YATR 9 cut(s) 12, 115, 119, 129, 200, 202, 240, 252, 287
FaqI GGGAC 1 cut(s) 162
FatI CATG 2 cut(s) 117, 127
Fnu4HI GCNGC 6 cut(s) 34, 43, 108, 111, 208, 260
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 6 cut(s) 34, 43, 108, 111, 208, 260
GluI GCNGC 6 cut(s) 34, 43, 108, 111, 208, 260
Hin1II CATG 2 cut(s) 121, 131
HindIII AAGCTT 1 cut(s) 246
Hpy188III TCNNGA 2 cut(s) 221, 292
HpyAV CCTTC 2 cut(s) 34, 269
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 6 cut(s) 36, 45, 64, 131, 207, 268
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 42, 265
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 2 cut(s) 121, 131
KspI CCGCGG 1 cut(s) 260
Kzo9I GATC 2 cut(s) 70, 253
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 4 cut(s) 22, 41, 87, 162
Lsp1109I GCAGC 5 cut(s) 20, 29, 119, 122, 219
LweI GCATC 1 cut(s) 255
MaeII ACGT 1 cut(s) 138
MalI GATC 2 cut(s) 72, 255
MboI GATC 2 cut(s) 70, 253
MboII GAAGA 3 cut(s) 19, 65, 80
MfeI CAATTG 1 cut(s) 211
MflI RGATCY 1 cut(s) 70
MluCI AATT 3 cut(s) 211, 224, 303
MnlI CCTC 2 cut(s) 63, 151
MroXI GAANNNNTTC 1 cut(s) 72
MspA1I CMGCKG 2 cut(s) 33, 259
MunI CAATTG 1 cut(s) 211
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 3 cut(s) 39, 42, 265
NdeII GATC 2 cut(s) 70, 253
NlaIII CATG 2 cut(s) 121, 131
NspI RCATGY 1 cut(s) 121
PciI ACATGT 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 72
PkrI GCNGC 6 cut(s) 35, 44, 109, 112, 209, 261
PscI ACATGT 1 cut(s) 117
PsiI TTATAA 1 cut(s) 287
PstI CTGCAG 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SacII CCGCGG 1 cut(s) 260
SatI GCNGC 6 cut(s) 34, 43, 108, 111, 208, 260
Sau3AI GATC 2 cut(s) 70, 253
ScaI AGTACT 1 cut(s) 317
SetI ASST 4 cut(s) 35, 44, 141, 250
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 34
Sfr303I CCGCGG 1 cut(s) 260
SgrBI CCGCGG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 3 cut(s) 211, 224, 303
SsiI CCGC 3 cut(s) 5, 257, 259
SspI AATATT 1 cut(s) 89
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 291
TasI AATT 3 cut(s) 211, 224, 303
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 262
TseI GCWGC 5 cut(s) 33, 42, 107, 110, 207
TspDTI ATGAA 1 cut(s) 149
XapI RAATTY 1 cut(s) 303
XceI RCATGY 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.