MD07G1295400.v1.1

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0006258
Physical Location & Seq
Reverse (-)
35611301 .. 35612497
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1295400.v1.1.491

Sequence Viewer

Length: 207 bp
ATGTTCTCTCATGCAATGAACGTCATTGTGGGACAAAAGGAGGACAGGAAGCTCATAACTGGTGTTTTCTCAGTTGCTGACATCTATTGCAGCAACTGCGGCCAGGTCTTAGGTTGGAAGTACATTCGAGCTTATGAGCAGACTCAGATGTACAAGCAAGGGAAATTTATAATCGAGAGAGCAAAGATTTCTAAGCAGTACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

69

Amino Acids

7.94

Weight (kDa)

9.43

Isoelectric Point (pI)

19.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 7 - 65 7.5e-10 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 170
AciI CCGC 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 3 cut(s) 122, 152, 200
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 2 cut(s) 52, 131
AluI AGCT 2 cut(s) 52, 131
AlwNI CAGNNNCTG 2 cut(s) 77, 96
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 164
BbvI GCAGC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 104
BisI GCNGC 2 cut(s) 91, 100
BlsI GCNGC 2 cut(s) 92, 101
Bme1390I CCNGG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 104
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 2 cut(s) 84, 158
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 102
BshFI GGCC 1 cut(s) 102
BslFI GGGAC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 102
Bsp1407I TGTACA 1 cut(s) 150
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 2 cut(s) 83, 157
BsrDI GCAATG 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 150
BstDEI CTNAG 4 cut(s) 70, 109, 144, 192
BstMWI GCNNNNNNNGC 2 cut(s) 96, 99
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 102
CaiI CAGNNNCTG 2 cut(s) 77, 96
Csp6I GTAC 3 cut(s) 121, 151, 199
CviAII CATG 1 cut(s) 11
CviJI RGCY 3 cut(s) 52, 102, 131
CviKI_1 RGCY 3 cut(s) 52, 102, 131
CviQI GTAC 3 cut(s) 121, 151, 199
DdeI CTNAG 4 cut(s) 70, 109, 144, 192
EaeI YGGCCR 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 102
FaeI CATG 1 cut(s) 14
FaiI YATR 4 cut(s) 12, 56, 135, 170
FaqI GGGAC 1 cut(s) 45
FatI CATG 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 91, 100
Fsp4HI GCNGC 2 cut(s) 91, 100
GluI GCNGC 2 cut(s) 91, 100
HaeIII GGCC 1 cut(s) 102
Hin1II CATG 1 cut(s) 14
HinfI GANTC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 2 cut(s) 14, 90
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 99
HpyF3I CTNAG 4 cut(s) 70, 109, 144, 192
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 1 cut(s) 14
LpnPI CCDG 4 cut(s) 31, 45, 89, 116
Lsp1109I GCAGC 1 cut(s) 102
MaeII ACGT 1 cut(s) 21
MluCI AATT 1 cut(s) 164
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 96, 99
NlaIII CATG 1 cut(s) 14
PkrI GCNGC 2 cut(s) 92, 101
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PsiI TTATAA 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PstNI CAGNNNCTG 2 cut(s) 77, 96
RsaI GTAC 3 cut(s) 122, 152, 200
RsaNI GTAC 3 cut(s) 121, 151, 199
SatI GCNGC 2 cut(s) 91, 100
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 104
SetI ASST 5 cut(s) 24, 54, 108, 115, 133
SgeI CNNG 9 cut(s) 23, 58, 72, 115, 116, 140, 166, 170, 187
Sse9I AATT 1 cut(s) 164
SsiI CCGC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 102
TaiI ACGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 127, 174
TasI AATT 1 cut(s) 164
TatI WGTACW 2 cut(s) 120, 150
TauI GCSGC 1 cut(s) 102
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 32
XapI RAATTY 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.