pycom01g23340

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0006258
Physical Location & Seq
Reverse (-)
20699705 .. 20699893
189 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23340.1

Sequence Viewer

Length: 189 bp
ATGAACATCATTGTGGGACAAAAAGAGGACAGGAAGCTCATATCTGGTGTTTTCTCAGTTGCTGACATCTATTGCAGCAACTGCGGTGAGGTCTTAGGTTGGAAGTACCTTCGAGCTTATGAGCCGACACAGATGTACAAGCAAGGGATGTTCATAATCGAGAGAGCAAAGATTTCTAAGCAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

63

Amino Acids

7.21

Weight (kDa)

9.0

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 7 - 59 1.9e-08 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AfaI GTAC 3 cut(s) 107, 137, 185
AluBI AGCT 2 cut(s) 37, 116
AluI AGCT 2 cut(s) 37, 116
AlwNI CAGNNNCTG 2 cut(s) 62, 81
ApeKI GCWGC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 98
BbvI GCAGC 1 cut(s) 87
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
BmcAI AGTACT 1 cut(s) 185
BseGI GGATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 87
BslFI GGGAC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 30
Bsp1407I TGTACA 1 cut(s) 135
BspACI CCGC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 135
BstAPI GCANNNNNTGC 1 cut(s) 81
BstAUI TGTACA 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 55, 94, 177
BstF5I GGATG 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 153
CaiI CAGNNNCTG 2 cut(s) 62, 81
Csp6I GTAC 3 cut(s) 106, 136, 184
CviJI RGCY 3 cut(s) 37, 116, 124
CviKI_1 RGCY 3 cut(s) 37, 116, 124
CviQI GTAC 3 cut(s) 106, 136, 184
DdeI CTNAG 3 cut(s) 55, 94, 177
FaiI YATR 3 cut(s) 41, 120, 155
FaqI GGGAC 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 76
HphI GGTGA 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 3 cut(s) 55, 94, 177
LpnPI CCDG 2 cut(s) 16, 30
Lsp1109I GCAGC 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 2 cut(s) 19, 82
MslI CAYNNNNRTG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 77
PstNI CAGNNNCTG 2 cut(s) 62, 81
RsaI GTAC 3 cut(s) 107, 137, 185
RsaNI GTAC 3 cut(s) 106, 136, 184
RseI CAYNNNNRTG 1 cut(s) 11
SatI GCNGC 1 cut(s) 76
ScaI AGTACT 1 cut(s) 185
SetI ASST 5 cut(s) 39, 93, 100, 111, 118
SgeI CNNG 6 cut(s) 43, 57, 125, 151, 155, 172
SmiMI CAYNNNNRTG 1 cut(s) 11
SsiI CCGC 1 cut(s) 84
TaqI TCGA 2 cut(s) 112, 159
TatI WGTACW 2 cut(s) 135, 183
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 2 cut(s) 17, 142
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.