Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0010599

Physical Location & Seq

Genomic Coordinates Forward (+)

1264320 .. 1264577

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1010100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGACATTGAATAAGGATGGACAAGTGAGTCACTCTTTGATTACTATGTGTGCAAGGTGTGGTAAGTGGGTTTTTGCACGGAAAATGTTTGATGAAATTATTGAGAGGGATTTGGTTTCGTGGAATTCCATGATTTTTGGGTATTGCAAGATGGGGTGTGCTGGAGATGGGGTGGGGTTGTTTCGGGAAATAAGGGGTGATGGATTTGAGCCTAATGAAACGACTTTGGTGACGGTTCTTGAGCGTGCAGGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

86

Amino Acids

9.51

Weight (kDa)

5.73

Isoelectric Point (pI)

26.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	37 - 80	4.4e-08	PPR repeat family
PPR	PF01535	39 - 69	9.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010599)

Species	Orthologous Gene IDs
malus_domestica	MD00G1010100.v1.1 MD00G1186800.v1.1 MD03G1030200.v1.1 MD07G1304900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0383741 RchiOBHm_Chr4g0439821 RchiOBHm_Chr7g0203551
rosa_laevigata	RLG00000019369
rosa_multiflora	Rmu_co8232911.1_g000001 Rmu_sc0003151.1_g000002 Rmu_sc0010226.1_g000002 Rmu_sc0010675.1_g000007 Rmu_sc0010675.1_g000009 Rmu_ssc0000029.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253700
rosa_rugosa	Rorug07G0205800
rosa_samantha	Rh1CG438200 Rh4CG108000 Rh4DG093100 Rh7AG206500 Rh7CG219000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	209, 241
BccI	CCATC	4 cut(s)	11, 145, 161, 194
BpmI	CTGGAG	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
BseGI	GGATG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	246
CviAII	CATG	2 cut(s)	130, 255
CviJI	RGCY	1 cut(s)	211
CviKI_1	RGCY	1 cut(s)	211
DrdI	GACNNNNNNGTC	1 cut(s)	27
DseDI	GACNNNNNNGTC	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	133, 258
FaiI	YATR	3 cut(s)	47, 131, 256
FatI	CATG	2 cut(s)	129, 254
FokI	GGATG	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	183
Hin1II	CATG	2 cut(s)	133, 258
HinfI	GANTC	1 cut(s)	28
HphI	GGTGA	2 cut(s)	209, 241
Hpy188III	TCNNGA	2 cut(s)	185, 239
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	4 cut(s)	53, 77, 147, 248
Hsp92II	CATG	2 cut(s)	133, 258
LpnPI	CCDG	2 cut(s)	147, 234
MaeIII	GTNAC	2 cut(s)	29, 229
MluCI	AATT	2 cut(s)	96, 124
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	1 cut(s)	99
NlaIII	CATG	2 cut(s)	133, 258
NmuCI	GTSAC	2 cut(s)	29, 229
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	37
SetI	ASST	1 cut(s)	59
SgeI	CNNG	9 cut(s)	35, 66, 90, 132, 142, 160, 174, 197, 251
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	96, 124
TaaI	ACNGT	1 cut(s)	235
TasI	AATT	2 cut(s)	96, 124
TseFI	GTSAC	2 cut(s)	29, 229
Tsp45I	GTSAC	2 cut(s)	29, 229
TspDTI	ATGAA	2 cut(s)	108, 231
TspGWI	ACGGA	1 cut(s)	94
XapI	RAATTY	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.