Rh1CG438200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0010599
Physical Location & Seq
Forward (+)
69256355 .. 69257029
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG438200.1

Sequence Viewer

Length: 549 bp
ATGAAACAAGAACGTGTAAGGCCTGATATTTCGACCTTTAATTCGTTGATTCGGTGGCACTGTAAGTCTGGTTTGTTAAAGAAGGCCCTTGAGTTGTTTACCGAGATGCAAGAACAAGGATTATATCCTGATCCGAAAATGTTTGTTACTATTATCAGTAGATTGGGGGAGCAAGGGAAGTGGGATATGATACAGAAGACCTTTGAGAATATGAGAAGCCGAGGGCATAAAAAAAGTGGGACTATTTATGCTGCTCTGGTTGACATTTATGGGCAATATGGAAAATTTCAGGACGCAGAAGAGTGTATATCTGCACTAAAGGCAGAAGGTCTTGTTCTCTCTGCCAGTATGTTTTGTGTCTTAGCAAATGCCTATGCCCAGCAGGGATTATGTGACCAGACAGTCAAAGTACTTCAGCTCATGGAAGCTGAGGGAATCGAACCAAATGTGATAATGCTGAATGTTTTGATTAATGCATTTGGTATTGCTGGTAGACATTTGGAGGCTTTGTCCATTTATCACCATATAAAAGAAAGTGCAAGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

182

Amino Acids

20.49

Weight (kDa)

6.96

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 6 - 37 1.2e-09 PPR repeat
PPR_2 PF13041 8 - 44 4.5e-11 PPR repeat family
PPR PF01535 11 - 41 3.7e-09 PPR repeat
PPR_long PF17177 27 - 177 4.9e-06 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 51 - 175 9.6e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 106 - 161 1.6e-07 Pentatricopeptide repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 493
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 398
AfaI GTAC 1 cut(s) 411
AflIII ACRYGT 1 cut(s) 13
AluBI AGCT 2 cut(s) 418, 428
AluI AGCT 2 cut(s) 418, 428
AlwI GGATC 1 cut(s) 125
AoxI GGCC 2 cut(s) 20, 84
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 284
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AseI ATTAAT 1 cut(s) 471
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 512
BbsI GAAGAC 1 cut(s) 203
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 238
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmcAI AGTACT 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 85
BmsI GCATC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bse1I ACTGG 1 cut(s) 345
BseDI CCNNGG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 238
BseYI CCCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 2 cut(s) 22, 86
BslFI GGGAC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 2 cut(s) 22, 86
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 2 cut(s) 22, 86
BspCNI CTCAG 1 cut(s) 421
BspPI GGATC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 345
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 130
Bst4CI ACNGT 2 cut(s) 62, 403
Bst6I CTCTTC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 361, 429
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 203
BsuRI GGCC 2 cut(s) 22, 86
BtsIMutI CAGTG 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 85
CseI GACGC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 410
CspCI CAANNNNNGTGG 2 cut(s) 161, 196
CviAII CATG 1 cut(s) 421
CviJI RGCY 6 cut(s) 22, 86, 219, 418, 428, 506
CviKI_1 RGCY 6 cut(s) 22, 86, 219, 418, 428, 506
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 2 cut(s) 361, 429
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
DrdI GACNNNNNNGTC 1 cut(s) 401
DseDI GACNNNNNNGTC 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 478
FaeI CATG 1 cut(s) 424
FaqI GGGAC 1 cut(s) 253
FatI CATG 1 cut(s) 420
FblI GTMKAC 1 cut(s) 493
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 252
GsaI CCCAGC 1 cut(s) 382
HaeIII GGCC 2 cut(s) 22, 86
HgaI GACGC 1 cut(s) 302
Hin1II CATG 1 cut(s) 424
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 2 cut(s) 49, 435
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 3 cut(s) 99, 262, 494
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 2 cut(s) 128, 290
Hpy8I GTNNAC 3 cut(s) 99, 262, 494
HpyAV CCTTC 2 cut(s) 76, 320
HpyCH4III ACNGT 2 cut(s) 62, 403
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 109, 314, 476, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 2 cut(s) 361, 429
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 1 cut(s) 424
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 96
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 2 cut(s) 145, 392
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 208, 311
MluCI AATT 2 cut(s) 40, 284
MnlI CCTC 3 cut(s) 215, 424, 496
Mph1103I ATGCAT 1 cut(s) 478
MseI TTAA 3 cut(s) 39, 77, 471
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 424
NmeAIII GCCGAG 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 392
NsiI ATGCAT 1 cut(s) 478
PceI AGGCCT 1 cut(s) 22
PfeI GAWTC 2 cut(s) 49, 435
PkrI GCNGC 1 cut(s) 253
PshBI ATTAAT 1 cut(s) 471
PspFI CCCAGC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 85
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
SaqAI TTAA 3 cut(s) 39, 77, 471
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 85
ScaI AGTACT 1 cut(s) 411
SetI ASST 6 cut(s) 16, 38, 203, 331, 420, 430
SfaNI GCATC 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 40, 284
SseBI AGGCCT 1 cut(s) 22
StuI AGGCCT 1 cut(s) 22
TaaI ACNGT 2 cut(s) 62, 403
TaiI ACGT 1 cut(s) 16
TaqI TCGA 2 cut(s) 32, 438
TasI AATT 2 cut(s) 40, 284
TatI WGTACW 1 cut(s) 409
TfiI GAWTC 2 cut(s) 49, 435
Tru1I TTAA 3 cut(s) 39, 77, 471
Tru9I TTAA 3 cut(s) 39, 77, 471
TscAI CASTG 1 cut(s) 65
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 65
VspI ATTAAT 1 cut(s) 471
XapI RAATTY 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 493
ZrmI AGTACT 1 cut(s) 411
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.