Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232911.1

Orthogroup ID

OG0010599

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 743

Gene Structure 742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232911.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 742 bp

atgcttagacccaaagccccttcacaccttattccccgccaaatcccttttgaaaatctcaatccccatacctcaaaccagttcctatctctctcgggaaagctcatatacctcttgaaacaatgcgtctccaccaaagagctgaaacaaatccacacccaaatgctcataaactccatacacaaacccaacttcctcctccccaaaatcatagacctcaaagacttcacctacgcctacaccctcttctcccacatccccgaacccaatggctacgctttcaacgtcatgctccgtggcctaaccaccacttggcaaaagtacccacttactcttcaactctattaccgaatgaagtctctgggtgtgatgccggataatttcacctacccatttctcttcatcgcgtgttggaatctctcggagcttaatcatggccgtgcagcacattcgtctgtgttgaagactgggttggacggtgatggtcatgtgtgtcactctctgatcacaatgtattcgatgtgtggggaactgggttatgcacggaaggtgttcgatgaaattccccagagagattcggtgtcgtggaactcgatgatttctgggtatacgaagatggggcgtgcaggggatgcggtggggttgtttggggagatgagggaggctggatttgagccgaatgagatgactctggtgagtgttctcggggcgtgcggggaccttggggatttgagcttgggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

247

Amino Acids

27.79

Weight (kDa)

8.22

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010599)

Species	Orthologous Gene IDs
malus_domestica	MD00G1010100.v1.1 MD00G1186800.v1.1 MD03G1030200.v1.1 MD07G1304900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0383741 RchiOBHm_Chr4g0439821 RchiOBHm_Chr7g0203551
rosa_laevigata	RLG00000019369
rosa_multiflora	Rmu_co8232911.1_g000001 Rmu_sc0003151.1_g000002 Rmu_sc0010226.1_g000002 Rmu_sc0010675.1_g000007 Rmu_sc0010675.1_g000009 Rmu_ssc0000029.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253700
rosa_rugosa	Rorug07G0205800
rosa_samantha	Rh1CG438200 Rh4CG108000 Rh4DG093100 Rh7AG206500 Rh7CG219000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	608
AccII	CGCG	1 cut(s)	407
AciI	CCGC	3 cut(s)	37, 635, 714
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	561
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	5 cut(s)	53, 118, 283, 338, 463
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	4 cut(s)	103, 142, 427, 735
AluI	AGCT	4 cut(s)	103, 142, 427, 735
Alw26I	GTCTC	2 cut(s)	133, 363
Ama87I	CYCGRG	2 cut(s)	94, 704
AoxI	GGCC	2 cut(s)	298, 436
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	561
Asp700I	GAANNNNTTC	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	718
AsuHPI	GGTGA	4 cut(s)	220, 376, 491, 706
AvaI	CYCGRG	2 cut(s)	94, 704
AvaII	GGWCC	1 cut(s)	718
BbsI	GAAGAC	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	2 cut(s)	476, 610
BceAI	ACGGC	1 cut(s)	423
BcgI	CGANNNNNNTGC	2 cut(s)	432, 466
BclI	TGATCA	1 cut(s)	504
BcoDI	GTCTC	2 cut(s)	133, 363
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme18I	GGWCC	1 cut(s)	718
BmeT110I	CYCGRG	2 cut(s)	94, 704
BmgT120I	GGNCC	1 cut(s)	718
BmiI	GGNNCC	1 cut(s)	719
BmrI	ACTGGG	2 cut(s)	477, 542
BmsI	GCATC	2 cut(s)	360, 622
BmuI	ACTGGG	2 cut(s)	477, 542
BpiI	GAAGAC	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	295, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	3 cut(s)	79, 472, 537
BseDI	CCNNGG	2 cut(s)	295, 721
BseGI	GGATG	2 cut(s)	255, 637
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseNI	ACTGG	3 cut(s)	79, 472, 537
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	455
BsgI	GTGCAG	2 cut(s)	462, 645
Bsh1236I	CGCG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	300, 438
BsiHKCI	CYCGRG	2 cut(s)	94, 704
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	133, 363
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	731
BsnI	GGCC	2 cut(s)	300, 438
BsoBI	CYCGRG	2 cut(s)	94, 704
Bsp143I	GATC	1 cut(s)	504
BspACI	CCGC	3 cut(s)	37, 635, 714
BspANI	GGCC	2 cut(s)	300, 438
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	719
BsrI	ACTGG	3 cut(s)	79, 472, 537
BssECI	CCNNGG	2 cut(s)	295, 721
BssMI	GATC	1 cut(s)	504
BssNAI	GTATAC	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	721
Bst1107I	GTATAC	1 cut(s)	609
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	3 cut(s)	251, 339, 404
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	624, 712
BstDEI	CTNAG	1 cut(s)	5
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	255, 637
BstFNI	CGCG	1 cut(s)	407
BstKTI	GATC	1 cut(s)	507
BstMAI	GTCTC	2 cut(s)	133, 363
BstMBI	GATC	1 cut(s)	504
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	470
BstZ17I	GTATAC	1 cut(s)	609
BsuRI	GGCC	2 cut(s)	300, 438
BtgI	CCRYGG	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	255, 637
Cac8I	GCNNGC	2 cut(s)	624, 712
Cfr13I	GGNCC	1 cut(s)	718
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	3 cut(s)	289, 434, 488
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	5
DpnI	GATC	1 cut(s)	506
DpnII	GATC	1 cut(s)	504
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	3 cut(s)	251, 339, 404
EarI	CTCTTC	3 cut(s)	251, 339, 404
Eco130I	CCWWGG	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	718
Eco88I	CYCGRG	2 cut(s)	94, 704
EcoO109I	RGGNCCY	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	721
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	3 cut(s)	292, 437, 491
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	3 cut(s)	288, 433, 487
FauI	CCCGC	2 cut(s)	44, 707
FbaI	TGATCA	1 cut(s)	504
FblI	GTMKAC	1 cut(s)	608
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	2 cut(s)	242, 644
Fsp4HI	GCNGC	1 cut(s)	444
GluI	GCNGC	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	300, 438
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	292, 437, 491
HinfI	GANTC	3 cut(s)	415, 575, 688
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	4 cut(s)	220, 376, 491, 706
Hpy166II	GTNNAC	1 cut(s)	609
Hpy188I	TCNGA	2 cut(s)	424, 504
Hpy188III	TCNNGA	2 cut(s)	96, 115
Hpy8I	GTNNAC	1 cut(s)	609
HpyAV	CCTTC	2 cut(s)	30, 541
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	443, 542, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
HpyF3I	CTNAG	1 cut(s)	5
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	292, 437, 491
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	1 cut(s)	504
LmnI	GCTCC	2 cut(s)	297, 424
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	2 cut(s)	360, 622
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	1 cut(s)	506
MboI	GATC	1 cut(s)	504
MboII	GAAGA	5 cut(s)	238, 326, 391, 475, 625
MluCI	AATT	2 cut(s)	379, 561
MlyI	GAGTC	1 cut(s)	682
MmeI	TCCRAC	2 cut(s)	392, 453
MnlI	CCTC	8 cut(s)	82, 122, 206, 209, 227, 254, 651, 655
MroXI	GAANNNNTTC	1 cut(s)	551
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	2 cut(s)	161, 438
MspI	CCGG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	632
NdeII	GATC	1 cut(s)	504
NlaIII	CATG	3 cut(s)	292, 437, 491
NlaIV	GGNNCC	1 cut(s)	719
NmuCI	GTSAC	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 590
PdmI	GAANNNNTTC	1 cut(s)	551
PfeI	GAWTC	2 cut(s)	415, 575
PflMI	CCANNNNNTGG	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
PpuMI	RGGWCCY	1 cut(s)	718
Psp5II	RGGWCCY	1 cut(s)	718
PspN4I	GGNNCC	1 cut(s)	719
PspPI	GGNCC	1 cut(s)	718
PspPPI	RGGWCCY	1 cut(s)	718
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	2 cut(s)	161, 438
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	1 cut(s)	504
Sau96I	GGNCC	1 cut(s)	718
SchI	GAGTC	1 cut(s)	682
SfaNI	GCATC	2 cut(s)	360, 622
SinI	GGWCC	1 cut(s)	718
SmiMI	CAYNNNNRTG	2 cut(s)	161, 438
Sse9I	AATT	2 cut(s)	379, 561
SsiI	CCGC	3 cut(s)	37, 635, 714
StyI	CCWWGG	1 cut(s)	721
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	3 cut(s)	518, 555, 593
TasI	AATT	2 cut(s)	379, 561
TfiI	GAWTC	2 cut(s)	415, 575
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	3 cut(s)	368, 391, 573
TspGWI	ACGGA	2 cut(s)	284, 559
Van91I	CCANNNNNTGG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	718
XapI	RAATTY	1 cut(s)	561
XmiI	GTMKAC	1 cut(s)	608
XmnI	GAANNNNTTC	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.