Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010599

Physical Location & Seq

Genomic Coordinates Reverse (-)

21247940 .. 21248095

Gene Structure 156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGATTTCCGGGTATATGAAGATGGGGCATGCAGGGGATGTCATTGTTGGGTTGTTTGGGGAGATGAGGGAGGCTGGATTTGAGCCGAATGAGATGACTCTGGTGAGTGTTCTCGGGGTGTGTAGGGACCTTGGGGATTTGAGTTTGGGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

51

Amino Acids

5.46

Weight (kDa)

4.7

Isoelectric Point (pI)

20.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 39	1e-05	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010599)

Species	Orthologous Gene IDs
malus_domestica	MD00G1010100.v1.1 MD00G1186800.v1.1 MD03G1030200.v1.1 MD07G1304900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0383741 RchiOBHm_Chr4g0439821 RchiOBHm_Chr7g0203551
rosa_laevigata	RLG00000019369
rosa_multiflora	Rmu_co8232911.1_g000001 Rmu_sc0003151.1_g000002 Rmu_sc0010226.1_g000002 Rmu_sc0010675.1_g000007 Rmu_sc0010675.1_g000009 Rmu_ssc0000029.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253700
rosa_rugosa	Rorug07G0205800
rosa_samantha	Rh1CG438200 Rh4CG108000 Rh4DG093100 Rh7AG206500 Rh7CG219000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Ama87I	CYCGRG	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	115
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	127
BccI	CCATC	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	10
BpuMI	CCSGG	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	127
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	2 cut(s)	74, 85
CviKI_1	RGCY	2 cut(s)	74, 85
Eco130I	CCWWGG	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	1 cut(s)	32
FaiI	YATR	3 cut(s)	15, 17, 30
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	1 cut(s)	28
FokI	GGATG	1 cut(s)	50
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	32
LpnPI	CCDG	4 cut(s)	18, 22, 60, 86
MboII	GAAGA	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	3 cut(s)	60, 64, 144
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	10
NciI	CCSGG	1 cut(s)	10
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	128
NspI	RCATGY	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	32
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	127
PspPPI	RGGWCCY	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	2 cut(s)	132, 155
SgeI	CNNG	9 cut(s)	21, 22, 41, 45, 87, 113, 125, 127, 143
SinI	GGWCC	1 cut(s)	127
SphI	GCATGC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	127
XceI	RCATGY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.