Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003151.1

Orthogroup ID

OG0010599

Physical Location & Seq

Genomic Coordinates Reverse (-)

10036 .. 10871

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003151.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atgatttccgggtatacgaagatggggcatgcaggggatgttgttgggttgtttggggagatgagggaggctggatttgagccgaatgagatgactctggtgagtgttctcggggagtgtggggaccttggggatttgagtttcgggaggtgggtggaggattttgttgttcagaaaaagttgcagctgaattcttatttggggtctgcactgattgatatgtatggaaaggtggtgatttgtgttcggcaaggagggtgtttgatagtattgttagggggcaatgaattgacactccggaatccggtcactagtccgatatctggtcgcaggattccggtaacaggagtccgcggccggccactggtcacgggagtccgacaaggtctccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

131

Amino Acids

14.1

Weight (kDa)

8.55

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010599)

Species	Orthologous Gene IDs
malus_domestica	MD00G1010100.v1.1 MD00G1186800.v1.1 MD03G1030200.v1.1 MD07G1304900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0383741 RchiOBHm_Chr4g0439821 RchiOBHm_Chr7g0203551
rosa_laevigata	RLG00000019369
rosa_multiflora	Rmu_co8232911.1_g000001 Rmu_sc0003151.1_g000002 Rmu_sc0010226.1_g000002 Rmu_sc0010675.1_g000007 Rmu_sc0010675.1_g000009 Rmu_ssc0000029.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253700
rosa_rugosa	Rorug07G0205800
rosa_samantha	Rh1CG438200 Rh4CG108000 Rh4DG093100 Rh7AG206500 Rh7CG219000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	1 cut(s)	354
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	2 cut(s)	352, 354
AcoI	YGGCCR	2 cut(s)	355, 359
AcsI	RAATTY	1 cut(s)	190
AfiI	CCNNNNNNNGG	4 cut(s)	304, 323, 344, 364
AhlI	ACTAGT	1 cut(s)	311
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	110
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	2 cut(s)	355, 359
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	112, 247
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	392
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	185, 355
BlsI	GCNGC	2 cut(s)	186, 356
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	10
BpuMI	CCSGG	1 cut(s)	10
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	127, 352
BsaWI	WCCGGW	3 cut(s)	297, 304, 337
BsaXI	ACNNNNNCTCC	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	4 cut(s)	304, 323, 344, 364
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	289
BseAI	TCCGGA	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	127, 352
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	4 cut(s)	304, 323, 344, 364
BseMI	GCAATG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	369
BseX3I	CGGCCG	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	354
Bsh1285I	CGRYCG	1 cut(s)	358
BshFI	GGCC	2 cut(s)	357, 361
BsiEI	CGRYCG	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	5 cut(s)	9, 298, 305, 338, 358
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	4 cut(s)	304, 323, 344, 364
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	357, 361
Bso31I	GGTCTC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	110
Bsp13I	TCCGGA	1 cut(s)	297
BspACI	CCGC	2 cut(s)	352, 354
BspANI	GGCC	2 cut(s)	357, 361
BspEI	TCCGGA	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	369
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	127, 352
BssNAI	GTATAC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	127
Bst1107I	GTATAC	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	30, 359
BstDSI	CCRYGG	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	354
BstMAI	GTCTC	1 cut(s)	392
BstMCI	CGRYCG	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	8
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	196
BstZ17I	GTATAC	1 cut(s)	15
BstZI	CGGCCG	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	357, 361
BtgI	CCRYGG	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	209, 362
Cac8I	GCNNGC	2 cut(s)	30, 359
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	124
Cfr42I	CCGCGG	1 cut(s)	355
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	5 cut(s)	71, 82, 187, 357, 361
CviKI_1	RGCY	5 cut(s)	71, 82, 187, 357, 361
EaeI	YGGCCR	2 cut(s)	355, 359
EagI	CGGCCG	1 cut(s)	355
EclXI	CGGCCG	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	190
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	1 cut(s)	32
FaiI	YATR	4 cut(s)	15, 30, 221, 225
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	185, 355
FokI	GGATG	1 cut(s)	50
FseI	GGCCGGCC	1 cut(s)	361
Fsp4HI	GCNGC	2 cut(s)	185, 355
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	2 cut(s)	185, 355
HaeIII	GGCC	2 cut(s)	357, 361
HapII	CCGG	5 cut(s)	9, 298, 305, 338, 358
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	5 cut(s)	94, 301, 334, 348, 375
HpaII	CCGG	5 cut(s)	9, 298, 305, 338, 358
HphI	GGTGA	2 cut(s)	112, 247
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	4 cut(s)	174, 318, 380, 392
Hpy188III	TCNNGA	2 cut(s)	145, 298
Hpy8I	GTNNAC	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	32, 184, 209
Hsp92II	CATG	1 cut(s)	32
Kpn2I	TCCGGA	1 cut(s)	297
KroI	GCCGGC	1 cut(s)	357
KroNI	GCCGGC	1 cut(s)	359
KspI	CCGCGG	1 cut(s)	355
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	307, 340, 367
MboII	GAAGA	1 cut(s)	31
MluCI	AATT	2 cut(s)	190, 287
MlyI	GAGTC	3 cut(s)	88, 357, 384
MnlI	CCTC	5 cut(s)	57, 61, 141, 151, 248
MroI	TCCGGA	1 cut(s)	297
MroNI	GCCGGC	1 cut(s)	357
MspA1I	CMGCKG	2 cut(s)	187, 354
MspI	CCGG	5 cut(s)	9, 298, 305, 338, 358
MspR9I	CCNGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	354
NaeI	GCCGGC	1 cut(s)	359
NciI	CCSGG	1 cut(s)	10
NgoMIV	GCCGGC	1 cut(s)	357
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	2 cut(s)	307, 367
NspI	RCATGY	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	32
PdiI	GCCGGC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	301, 334
PflFI	GACNNNGTC	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	186, 356
PleI	GAGTC	3 cut(s)	88, 356, 383
PpsI	GAGTC	3 cut(s)	88, 356, 383
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	124
PspPPI	RGGWCCY	1 cut(s)	124
PsyI	GACNNNGTC	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	187
RigI	GGCCGGCC	1 cut(s)	361
SacII	CCGCGG	1 cut(s)	355
SatI	GCNGC	2 cut(s)	185, 355
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	3 cut(s)	88, 357, 384
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	5 cut(s)	129, 152, 189, 234, 388
Sfr303I	CCGCGG	1 cut(s)	355
SgrBI	CCGCGG	1 cut(s)	355
SinI	GGWCC	1 cut(s)	124
SpeI	ACTAGT	1 cut(s)	311
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	2 cut(s)	190, 287
SsiI	CCGC	2 cut(s)	352, 354
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	127
TasI	AATT	2 cut(s)	190, 287
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	2 cut(s)	301, 334
TscAI	CASTG	2 cut(s)	216, 369
TseFI	GTSAC	2 cut(s)	307, 367
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	2 cut(s)	307, 367
TspDTI	ATGAA	1 cut(s)	300
TspRI	CASTG	2 cut(s)	216, 369
Tth111I	GACNNNGTC	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	190
XceI	RCATGY	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.