Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000029.1

Orthogroup ID

OG0010599

Physical Location & Seq

Genomic Coordinates Reverse (-)

21654 .. 22468

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000029.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atggggcatgcaggggatgttgttgggttgtttggggagatgagggaggctggatttgagccgaatgagatgactctggtgagtgttctcggggagtgtggggaccttggggatttgagtttggggaggtgggtggaggattttgttgttcaaaaaaagttgctgctgaattcttatttggggtctgcactgattgggggcaataaattgacactccggaatccggtcaccagtccgatagctggtcgcaggattccggtaacaggagtccgcggccggccactggtcacgggagtccgacaaggtctccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

104

Amino Acids

11.09

Weight (kDa)

9.1

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010599)

Species	Orthologous Gene IDs
malus_domestica	MD00G1010100.v1.1 MD00G1186800.v1.1 MD03G1030200.v1.1 MD07G1304900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0383741 RchiOBHm_Chr4g0439821 RchiOBHm_Chr7g0203551
rosa_laevigata	RLG00000019369
rosa_multiflora	Rmu_co8232911.1_g000001 Rmu_sc0003151.1_g000002 Rmu_sc0010226.1_g000002 Rmu_sc0010675.1_g000007 Rmu_sc0010675.1_g000009 Rmu_ssc0000029.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253700
rosa_rugosa	Rorug07G0205800
rosa_samantha	Rh1CG438200 Rh4CG108000 Rh4DG093100 Rh7AG206500 Rh7CG219000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	273
AccIII	TCCGGA	1 cut(s)	216
AciI	CCGC	2 cut(s)	271, 273
AcoI	YGGCCR	2 cut(s)	274, 278
AcsI	RAATTY	1 cut(s)	169
AfiI	CCNNNNNNNGG	4 cut(s)	223, 242, 263, 283
AgsI	TTSAA	1 cut(s)	152
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	89
Aor13HI	TCCGGA	1 cut(s)	216
AoxI	GGCC	2 cut(s)	274, 278
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	91, 220
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	311
BisI	GCNGC	2 cut(s)	164, 274
BlsI	GCNGC	2 cut(s)	165, 275
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	106, 271
BsaWI	WCCGGW	3 cut(s)	216, 223, 256
BsaXI	ACNNNNNCTCC	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 242, 263, 283
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	231, 288
BseAI	TCCGGA	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	106, 271
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	4 cut(s)	223, 242, 263, 283
BseNI	ACTGG	2 cut(s)	231, 288
BseX3I	CGGCCG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	276, 280
BsiEI	CGRYCG	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	4 cut(s)	217, 224, 257, 277
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	4 cut(s)	223, 242, 263, 283
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	276, 280
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	89
Bsp13I	TCCGGA	1 cut(s)	216
BspACI	CCGC	2 cut(s)	271, 273
BspANI	GGCC	2 cut(s)	276, 280
BspEI	TCCGGA	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	231, 288
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	106, 271
BssT1I	CCWWGG	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	9, 278
BstDSI	CCRYGG	1 cut(s)	271
BstEII	GGTNACC	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	311
BstMCI	CGRYCG	1 cut(s)	277
BstNSI	RCATGY	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	150
BstZI	CGGCCG	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	276, 280
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	188, 281
Cac8I	GCNNGC	2 cut(s)	9, 278
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	103
Cfr42I	CCGCGG	1 cut(s)	274
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	5 cut(s)	50, 61, 242, 276, 280
CviKI_1	RGCY	5 cut(s)	50, 61, 242, 276, 280
EaeI	YGGCCR	2 cut(s)	274, 278
EagI	CGGCCG	1 cut(s)	274
EclXI	CGGCCG	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	103
Eco52I	CGGCCG	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	89
Eco91I	GGTNACC	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	11
FaiI	YATR	1 cut(s)	9
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	164, 274
FokI	GGATG	1 cut(s)	29
FseI	GGCCGGCC	1 cut(s)	280
Fsp4HI	GCNGC	2 cut(s)	164, 274
GluI	GCNGC	2 cut(s)	164, 274
HaeIII	GGCC	2 cut(s)	276, 280
HapII	CCGG	4 cut(s)	217, 224, 257, 277
Hin1II	CATG	1 cut(s)	11
HinfI	GANTC	5 cut(s)	73, 220, 253, 267, 294
HpaII	CCGG	4 cut(s)	217, 224, 257, 277
HphI	GGTGA	2 cut(s)	91, 220
Hpy188I	TCNGA	3 cut(s)	237, 299, 311
Hpy188III	TCNNGA	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	11, 188
Hsp92II	CATG	1 cut(s)	11
Kpn2I	TCCGGA	1 cut(s)	216
KroI	GCCGGC	1 cut(s)	276
KroNI	GCCGGC	1 cut(s)	278
KspI	CCGCGG	1 cut(s)	274
Lsp1109I	GCAGC	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	226, 259, 286
MluCI	AATT	2 cut(s)	169, 206
MlyI	GAGTC	3 cut(s)	67, 276, 303
MnlI	CCTC	4 cut(s)	36, 40, 120, 130
MroI	TCCGGA	1 cut(s)	216
MroNI	GCCGGC	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	4 cut(s)	217, 224, 257, 277
MvnI	CGCG	1 cut(s)	273
NaeI	GCCGGC	1 cut(s)	278
NgoMIV	GCCGGC	1 cut(s)	276
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	104
NmuCI	GTSAC	2 cut(s)	226, 286
NspI	RCATGY	1 cut(s)	11
PaeI	GCATGC	1 cut(s)	11
PdiI	GCCGGC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	220, 253
PflFI	GACNNNGTC	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	165, 275
PleI	GAGTC	3 cut(s)	67, 275, 302
PpsI	GAGTC	3 cut(s)	67, 275, 302
PpuMI	RGGWCCY	1 cut(s)	103
Psp5II	RGGWCCY	1 cut(s)	103
PspEI	GGTNACC	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	1 cut(s)	103
PspPPI	RGGWCCY	1 cut(s)	103
PsyI	GACNNNGTC	1 cut(s)	303
RigI	GGCCGGCC	1 cut(s)	280
SacII	CCGCGG	1 cut(s)	274
SatI	GCNGC	2 cut(s)	164, 274
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	3 cut(s)	67, 276, 303
SetI	ASST	4 cut(s)	108, 131, 244, 307
Sfr303I	CCGCGG	1 cut(s)	274
SgrBI	CCGCGG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	103
SphI	GCATGC	1 cut(s)	11
Sse9I	AATT	2 cut(s)	169, 206
SsiI	CCGC	2 cut(s)	271, 273
StyI	CCWWGG	1 cut(s)	106
TasI	AATT	2 cut(s)	169, 206
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	220, 253
TscAI	CASTG	2 cut(s)	195, 288
TseFI	GTSAC	2 cut(s)	226, 286
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	2 cut(s)	226, 286
TspRI	CASTG	2 cut(s)	195, 288
Tth111I	GACNNNGTC	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.