Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010226.1

Orthogroup ID

OG0010599

Physical Location & Seq

Genomic Coordinates Reverse (-)

9505 .. 9798

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010226.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgaaattcccccagagagattcggtgtcgtggaactcgatgatttctgggtatacgaagatggggcatgcaggggatgttgttgggttgtttggggagatgagggaggctggatttgagccgaatgagatgactctggtgagtgttctcggggagtgtggggaccttggggatttgagtttggggaggtgggtggaggattttgttgttcagaaaaagttgcagctgaattcttatttggggtctgcactgattggtatgtatggaaaggtggtgatttgtgttcggcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

97

Amino Acids

10.68

Weight (kDa)

5.24

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010599)

Species	Orthologous Gene IDs
malus_domestica	MD00G1010100.v1.1 MD00G1186800.v1.1 MD03G1030200.v1.1 MD07G1304900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0383741 RchiOBHm_Chr4g0439821 RchiOBHm_Chr7g0203551
rosa_laevigata	RLG00000019369
rosa_multiflora	Rmu_co8232911.1_g000001 Rmu_sc0003151.1_g000002 Rmu_sc0010226.1_g000002 Rmu_sc0010675.1_g000007 Rmu_sc0010675.1_g000009 Rmu_ssc0000029.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253700
rosa_rugosa	Rorug07G0205800
rosa_samantha	Rh1CG438200 Rh4CG108000 Rh4DG093100 Rh7AG206500 Rh7CG219000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	5, 229
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	223
ApoI	RAATTY	2 cut(s)	5, 229
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	151, 286
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	55
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	235
BsgI	GTGCAG	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	166
BssNAI	GTATAC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	166
Bst1107I	GTATAC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	235
BstZ17I	GTATAC	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	163
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	3 cut(s)	110, 121, 226
CviKI_1	RGCY	3 cut(s)	110, 121, 226
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	1 cut(s)	71
FaiI	YATR	4 cut(s)	54, 69, 260, 264
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	224
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	71
HinfI	GANTC	2 cut(s)	20, 133
HphI	GGTGA	2 cut(s)	151, 286
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	213
Hpy8I	GTNNAC	1 cut(s)	54
HpyCH4V	TGCA	3 cut(s)	71, 223, 248
Hsp92II	CATG	1 cut(s)	71
LpnPI	CCDG	5 cut(s)	26, 33, 57, 96, 122
Lsp1109I	GCAGC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	70
MluCI	AATT	2 cut(s)	5, 229
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	4 cut(s)	96, 100, 180, 190
MspA1I	CMGCKG	1 cut(s)	226
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	225
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	226
SatI	GCNGC	1 cut(s)	224
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	127
SetI	ASST	4 cut(s)	168, 191, 228, 273
SinI	GGWCC	1 cut(s)	163
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	2 cut(s)	5, 229
StyI	CCWWGG	1 cut(s)	166
TaqI	TCGA	1 cut(s)	38
TasI	AATT	2 cut(s)	5, 229
TfiI	GAWTC	1 cut(s)	20
TscAI	CASTG	1 cut(s)	255
TseI	GCWGC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	5, 229
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.