Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1010100.v1.1 MD00G1186800.v1.1 MD03G1030200.v1.1 MD07G1304900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0383741 RchiOBHm_Chr4g0439821 RchiOBHm_Chr7g0203551 |
| rosa_laevigata | RLG00000019369 |
| rosa_multiflora | Rmu_co8232911.1_g000001 Rmu_sc0003151.1_g000002 Rmu_sc0010226.1_g000002 Rmu_sc0010675.1_g000007 Rmu_sc0010675.1_g000009 Rmu_ssc0000029.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00253700 |
| rosa_rugosa | Rorug07G0205800 |
| rosa_samantha | Rh1CG438200 Rh4CG108000 Rh4DG093100 Rh7AG206500 Rh7CG219000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 101 |
| AcsI | RAATTY | 3 cut(s) | 54, 220, 277 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 212, 244, 269, 301 |
| AluBI | AGCT | 1 cut(s) | 274 |
| AluI | AGCT | 1 cut(s) | 274 |
| Ama87I | CYCGRG | 1 cut(s) | 197 |
| ApeKI | GCWGC | 1 cut(s) | 271 |
| ApoI | RAATTY | 3 cut(s) | 54, 220, 277 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 44 |
| AspS9I | GGNCC | 1 cut(s) | 211 |
| AsuC2I | CCSGG | 1 cut(s) | 97 |
| AsuHPI | GGTGA | 4 cut(s) | 22, 32, 199, 334 |
| AvaI | CYCGRG | 1 cut(s) | 197 |
| AvaII | GGWCC | 1 cut(s) | 211 |
| BbvI | GCAGC | 1 cut(s) | 283 |
| BccI | CCATC | 1 cut(s) | 103 |
| BcnI | CCSGG | 1 cut(s) | 97 |
| BfaI | CTAG | 1 cut(s) | 26 |
| BisI | GCNGC | 1 cut(s) | 272 |
| BlsI | GCNGC | 1 cut(s) | 273 |
| Bme1390I | CCNGG | 1 cut(s) | 97 |
| Bme18I | GGWCC | 1 cut(s) | 211 |
| BmeT110I | CYCGRG | 1 cut(s) | 197 |
| BmgT120I | GGNCC | 1 cut(s) | 211 |
| BmiI | GGNNCC | 1 cut(s) | 212 |
| BmrFI | CCNGG | 1 cut(s) | 97 |
| BmsI | GCATC | 1 cut(s) | 115 |
| BpuMI | CCSGG | 1 cut(s) | 97 |
| BsaJI | CCNNGG | 1 cut(s) | 214 |
| BseDI | CCNNGG | 1 cut(s) | 214 |
| BseGI | GGATG | 1 cut(s) | 130 |
| BseXI | GCAGC | 1 cut(s) | 283 |
| BsiHKCI | CYCGRG | 1 cut(s) | 197 |
| BsiSI | CCGG | 1 cut(s) | 96 |
| BslFI | GGGAC | 1 cut(s) | 224 |
| BsmFI | GGGAC | 1 cut(s) | 224 |
| BsoBI | CYCGRG | 1 cut(s) | 197 |
| BspLI | GGNNCC | 1 cut(s) | 212 |
| BssECI | CCNNGG | 1 cut(s) | 214 |
| BssNAI | GTATAC | 1 cut(s) | 102 |
| BssT1I | CCWWGG | 1 cut(s) | 214 |
| Bst1107I | GTATAC | 1 cut(s) | 102 |
| BstF5I | GGATG | 1 cut(s) | 130 |
| BstNSI | RCATGY | 1 cut(s) | 119 |
| BstSCI | CCNGG | 1 cut(s) | 95 |
| BstV1I | GCAGC | 1 cut(s) | 283 |
| BstZ17I | GTATAC | 1 cut(s) | 102 |
| BtsCI | GGATG | 1 cut(s) | 130 |
| Cfr13I | GGNCC | 1 cut(s) | 211 |
| CviAII | CATG | 2 cut(s) | 78, 116 |
| CviJI | RGCY | 2 cut(s) | 158, 274 |
| CviKI_1 | RGCY | 2 cut(s) | 158, 274 |
| Eco130I | CCWWGG | 1 cut(s) | 214 |
| Eco47I | GGWCC | 1 cut(s) | 211 |
| Eco88I | CYCGRG | 1 cut(s) | 197 |
| EcoO109I | RGGNCCY | 1 cut(s) | 211 |
| EcoRI | GAATTC | 1 cut(s) | 277 |
| EcoT14I | CCWWGG | 1 cut(s) | 214 |
| ErhI | CCWWGG | 1 cut(s) | 214 |
| FaeI | CATG | 2 cut(s) | 81, 119 |
| FaiI | YATR | 8 cut(s) | 16, 33, 79, 102, 117, 165, 308, 312 |
| FaqI | GGGAC | 1 cut(s) | 224 |
| FatI | CATG | 2 cut(s) | 77, 115 |
| FblI | GTMKAC | 1 cut(s) | 101 |
| Fnu4HI | GCNGC | 1 cut(s) | 272 |
| FokI | GGATG | 1 cut(s) | 137 |
| Fsp4HI | GCNGC | 1 cut(s) | 272 |
| FspBI | CTAG | 1 cut(s) | 26 |
| GluI | GCNGC | 1 cut(s) | 272 |
| HapII | CCGG | 1 cut(s) | 96 |
| Hin1II | CATG | 2 cut(s) | 81, 119 |
| HinfI | GANTC | 3 cut(s) | 68, 167, 181 |
| HpaII | CCGG | 1 cut(s) | 96 |
| HphI | GGTGA | 4 cut(s) | 22, 32, 199, 334 |
| Hpy166II | GTNNAC | 2 cut(s) | 23, 102 |
| Hpy8I | GTNNAC | 2 cut(s) | 23, 102 |
| HpyAV | CCTTC | 1 cut(s) | 34 |
| HpyCH4V | TGCA | 2 cut(s) | 35, 271 |
| Hsp92II | CATG | 2 cut(s) | 81, 119 |
| LpnPI | CCDG | 4 cut(s) | 74, 109, 144, 170 |
| Lsp1109I | GCAGC | 1 cut(s) | 283 |
| LweI | GCATC | 1 cut(s) | 115 |
| MaeI | CTAG | 1 cut(s) | 26 |
| MboII | GAAGA | 1 cut(s) | 118 |
| MluCI | AATT | 3 cut(s) | 54, 220, 277 |
| MlyI | GAGTC | 2 cut(s) | 175, 176 |
| MnlI | CCTC | 5 cut(s) | 144, 148, 228, 238, 334 |
| MroXI | GAANNNNTTC | 1 cut(s) | 44 |
| MspA1I | CMGCKG | 1 cut(s) | 274 |
| MspI | CCGG | 1 cut(s) | 96 |
| MspR9I | CCNGG | 1 cut(s) | 97 |
| NciI | CCSGG | 1 cut(s) | 97 |
| NlaIII | CATG | 2 cut(s) | 81, 119 |
| NlaIV | GGNNCC | 1 cut(s) | 212 |
| NspI | RCATGY | 1 cut(s) | 119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 44 |
| PfeI | GAWTC | 1 cut(s) | 68 |
| PkrI | GCNGC | 1 cut(s) | 273 |
| PleI | GAGTC | 2 cut(s) | 175, 175 |
| PpsI | GAGTC | 2 cut(s) | 175, 175 |
| PpuMI | RGGWCCY | 1 cut(s) | 211 |
| Psp5II | RGGWCCY | 1 cut(s) | 211 |
| PspN4I | GGNNCC | 1 cut(s) | 212 |
| PspPI | GGNCC | 1 cut(s) | 211 |
| PspPPI | RGGWCCY | 1 cut(s) | 211 |
| PvuII | CAGCTG | 1 cut(s) | 274 |
| SatI | GCNGC | 1 cut(s) | 272 |
| Sau96I | GGNCC | 1 cut(s) | 211 |
| SchI | GAGTC | 2 cut(s) | 175, 176 |
| ScrFI | CCNGG | 1 cut(s) | 97 |
| SetI | ASST | 6 cut(s) | 31, 45, 216, 239, 276, 321 |
| SfaNI | GCATC | 1 cut(s) | 115 |
| SinI | GGWCC | 1 cut(s) | 211 |
| Sse9I | AATT | 3 cut(s) | 54, 220, 277 |
| SspMI | CTAG | 1 cut(s) | 26 |
| StyD4I | CCNGG | 1 cut(s) | 95 |
| StyI | CCWWGG | 1 cut(s) | 214 |
| TaqI | TCGA | 3 cut(s) | 48, 86, 170 |
| TasI | AATT | 3 cut(s) | 54, 220, 277 |
| TfiI | GAWTC | 1 cut(s) | 68 |
| TseI | GCWGC | 1 cut(s) | 271 |
| TspDTI | ATGAA | 1 cut(s) | 66 |
| TspGWI | ACGGA | 1 cut(s) | 52 |
| VpaK11BI | GGWCC | 1 cut(s) | 211 |
| XapI | RAATTY | 3 cut(s) | 54, 220, 277 |
| XceI | RCATGY | 1 cut(s) | 119 |
| XmiI | GTMKAC | 1 cut(s) | 101 |
| XmnI | GAANNNNTTC | 1 cut(s) | 44 |
| XspI | CTAG | 1 cut(s) | 26 |