Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005355

Physical Location & Seq

Genomic Coordinates Forward (+)

12876528 .. 12879829

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1066700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGCGCCGCCTCCTGGCCCATATTCTGGAACCAGCACCCTAGCCTTGGTGGCTCGTGTTTCCGCATTCTCCTTTGGACTCGTATACGGAAGCGTTAAGCTCAAGTATCTCAAGGCAAAGGCTAAATCTGAACAAAAGGCTGCGGCAAAGGCTCATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

ATP-synt_E

Protein Analysis

54

Amino Acids

5.53

Weight (kDa)

10.17

Isoelectric Point (pI)

18.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT5G15320 AT5G15320
fragaria_vesca	FvH4_2g40200 FvH4_2g40204 FvH4_6g42921
malus_domestica	MD00G1066700.v1.1 MD10G1061700.v1.1
prunus_persica	Prupe.1G368600_v2.0.a1 Prupe.8G082400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268521 RchiOBHm_Chr6g0302511
rosa_laevigata	RLG00000033803
rosa_roxburghii	Rroxscaffold_7G00165700 Rroxscaffold_7G00199760
rosa_rugosa	Rorug06G0314700
rosa_samantha	Rh6AG427900 Rh6BG474800 Rh6CG440000 Rh6DG427000
rosa_wichuraiana	Rw6G014000 Rw6G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	3 cut(s)	8, 63, 143
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	14, 26, 46
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	15
BfaI	CTAG	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	3 cut(s)	8, 141, 144
BlsI	GCNGC	3 cut(s)	9, 142, 145
Bme1390I	CCNGG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	6, 31
BmrFI	CCNGG	1 cut(s)	15
BpuEI	CTTGAG	2 cut(s)	86, 95
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 26, 46
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	14, 26, 46
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	4
BslI	CCNNNNNNNGG	3 cut(s)	14, 26, 46
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	18
BspACI	CCGC	3 cut(s)	8, 63, 143
BspANI	GGCC	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	6, 31
BspT107I	GGYRCC	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	45
BssNAI	GTATAC	1 cut(s)	85
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	45
Bst1107I	GTATAC	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	5
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 149
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	127
BstZ17I	GTATAC	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	17
CviJI	RGCY	7 cut(s)	18, 44, 53, 100, 122, 140, 152
CviKI_1	RGCY	7 cut(s)	18, 44, 53, 100, 122, 140, 152
DinI	GGCGCC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	45
FaiI	YATR	2 cut(s)	22, 85
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	8, 141, 144
Fsp4HI	GCNGC	3 cut(s)	8, 141, 144
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	8, 141, 144
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 149
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	12, 27, 46
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	41
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	1 cut(s)	21
MseI	TTAA	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	50, 149
NarI	GGCGCC	1 cut(s)	5
NlaIV	GGNNCC	2 cut(s)	6, 31
PctI	GAATGC	1 cut(s)	65
PflMI	CCANNNNNTGG	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	9, 142, 145
PleI	GAGTC	1 cut(s)	72
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	6, 31
PspPI	GGNCC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	8, 141, 144
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	1 cut(s)	102
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	2 cut(s)	101, 110
SmoI	CTYRAG	2 cut(s)	101, 110
SsiI	CCGC	3 cut(s)	8, 63, 143
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	45
TauI	GCSGC	2 cut(s)	10, 146
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.