Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005355

Physical Location & Seq

Genomic Coordinates Reverse (-)

7389247 .. 7390549

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGCGCCGCCTCCAGGTCCTTACTCCGGCACCAGCACTCTTGCTCTGGTTGCTCGTGCGTCGGCCTTCACTCTCGGTGTGGTTTACGGAAGCGTGAAGCATAAAGTTTTGAAGGCGAAGGCCAGGTCTCTTGCGAAAACTCAAGCCAAGGCTCATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

ATP-synt_E

Protein Analysis

53

Amino Acids

5.47

Weight (kDa)

10.79

Isoelectric Point (pI)

24.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT5G15320 AT5G15320
fragaria_vesca	FvH4_2g40200 FvH4_2g40204 FvH4_6g42921
malus_domestica	MD00G1066700.v1.1 MD10G1061700.v1.1
prunus_persica	Prupe.1G368600_v2.0.a1 Prupe.8G082400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268521 RchiOBHm_Chr6g0302511
rosa_laevigata	RLG00000033803
rosa_roxburghii	Rroxscaffold_7G00165700 Rroxscaffold_7G00199760
rosa_rugosa	Rorug06G0314700
rosa_samantha	Rh6AG427900 Rh6BG474800 Rh6CG440000 Rh6DG427000
rosa_wichuraiana	Rw6G014000 Rw6G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 29
AciI	CCGC	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	14, 26
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	13, 122
Alw26I	GTCTC	1 cut(s)	132
AoxI	GGCC	2 cut(s)	63, 120
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	17
BanI	GGYRCC	2 cut(s)	4, 29
BauI	CACGAG	1 cut(s)	54
BciT130I	CCWGG	2 cut(s)	15, 124
BcoDI	GTCTC	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	2 cut(s)	15, 124
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	6, 31
BmrFI	CCNGG	2 cut(s)	15, 124
BpuEI	CTTGAG	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 26
BseBI	CCWGG	2 cut(s)	15, 124
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	14, 26
BshFI	GGCC	2 cut(s)	65, 122
BshNI	GGYRCC	2 cut(s)	4, 29
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	14, 26
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	65, 122
Bso31I	GGTCTC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	65, 122
BspLI	GGNNCC	2 cut(s)	6, 31
BspT107I	GGYRCC	2 cut(s)	4, 29
BspTNI	GGTCTC	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	147
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	15, 124
BstACI	GRCGYC	1 cut(s)	5
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	2 cut(s)	15, 124
BstSCI	CCNGG	2 cut(s)	13, 122
BsuRI	GGCC	2 cut(s)	65, 122
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	17
CseI	GACGC	1 cut(s)	48
CviJI	RGCY	4 cut(s)	65, 122, 146, 152
CviKI_1	RGCY	4 cut(s)	65, 122, 146, 152
DinI	GGCGCC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	17
EcoRII	CCWGG	2 cut(s)	13, 122
EcoT14I	CCWWGG	1 cut(s)	147
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	147
FaiI	YATR	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	8
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	65, 122
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	76, 106, 112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
LpnPI	CCDG	6 cut(s)	27, 32, 40, 46, 109, 136
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	1 cut(s)	21
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	2 cut(s)	15, 124
MvaI	CCWGG	2 cut(s)	15, 124
MwoI	GCNNNNNNNGC	1 cut(s)	50
NarI	GGCGCC	1 cut(s)	5
NlaIV	GGNNCC	2 cut(s)	6, 31
PkrI	GCNGC	1 cut(s)	9
PluTI	GGCGCC	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	13, 122
PspGI	CCWGG	2 cut(s)	13, 122
PspN4I	GGNNCC	2 cut(s)	6, 31
PspPI	GGNCC	1 cut(s)	17
PspPPI	RGGWCCY	1 cut(s)	17
SatI	GCNGC	1 cut(s)	8
Sau96I	GGNCC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	15, 124
SetI	ASST	2 cut(s)	19, 128
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
SsiI	CCGC	1 cut(s)	8
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	2 cut(s)	13, 122
StyI	CCWWGG	1 cut(s)	147
TauI	GCSGC	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.