Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005355

Physical Location & Seq

Genomic Coordinates Reverse (-)

11540394 .. 11542817

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G082400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGGCGCCGCCTCCAGGACCCTATTCTGGAACCAGCACCCTCGCCTTGGTTGCTCGTGCTTCCGCATTCTCCTTTGGACTCGTATACGGAAGCATTAAGCTCAAGTATCTCAAGGCAAAGGCTAAATCTGCAGCAAAGGCTCATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

50

Amino Acids

5.06

Weight (kDa)

10.3

Isoelectric Point (pI)

10.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT5G15320 AT5G15320
fragaria_vesca	FvH4_2g40200 FvH4_2g40204 FvH4_6g42921
malus_domestica	MD00G1066700.v1.1 MD10G1061700.v1.1
prunus_persica	Prupe.1G368600_v2.0.a1 Prupe.8G082400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268521 RchiOBHm_Chr6g0302511
rosa_laevigata	RLG00000033803
rosa_roxburghii	Rroxscaffold_7G00165700 Rroxscaffold_7G00199760
rosa_rugosa	Rorug06G0314700
rosa_samantha	Rh6AG427900 Rh6BG474800 Rh6CG440000 Rh6DG427000
rosa_wichuraiana	Rw6G014000 Rw6G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	2 cut(s)	8, 63
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	14, 26, 46
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	8, 132
BlsI	GCNGC	2 cut(s)	9, 133
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	3 cut(s)	6, 19, 31
BmrFI	CCNGG	1 cut(s)	15
BpuEI	CTTGAG	2 cut(s)	86, 95
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 26, 46
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	14, 26, 46
BseXI	GCAGC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	4
BslI	CCNNNNNNNGG	3 cut(s)	14, 26, 46
BsmI	GAATGC	1 cut(s)	65
BspACI	CCGC	2 cut(s)	8, 63
BspLI	GGNNCC	3 cut(s)	6, 19, 31
BspMAI	CTGCAG	1 cut(s)	133
BspT107I	GGYRCC	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	45
BssNAI	GTATAC	1 cut(s)	85
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	45
Bst1107I	GTATAC	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	5
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 128, 137
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	143
BstZ17I	GTATAC	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	145
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	17
CviJI	RGCY	3 cut(s)	100, 122, 140
CviKI_1	RGCY	3 cut(s)	100, 122, 140
DinI	GGCGCC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	45
FaiI	YATR	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	8, 132
Fsp4HI	GCNGC	2 cut(s)	8, 132
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	8, 132
HaeII	RGCGCY	1 cut(s)	8
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 128, 137
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	12, 27, 46
Lsp1109I	GCAGC	1 cut(s)	143
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	2 cut(s)	21, 50
MseI	TTAA	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	50, 128, 137
NarI	GGCGCC	1 cut(s)	5
NlaIV	GGNNCC	3 cut(s)	6, 19, 31
PctI	GAATGC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	9, 133
PleI	GAGTC	1 cut(s)	72
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	72
PpuMI	RGGWCCY	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	6, 19, 31
PspPI	GGNCC	1 cut(s)	17
PspPPI	RGGWCCY	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	2 cut(s)	8, 132
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	129
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	101, 110
SmoI	CTYRAG	2 cut(s)	101, 110
SsiI	CCGC	2 cut(s)	8, 63
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	45
TauI	GCSGC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	1 cut(s)	131
TspGWI	ACGGA	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.