Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005355

Physical Location & Seq

Genomic Coordinates Reverse (-)

46904338 .. 46907045

Gene Structure 2708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGCGCCGCCTCCCGGACCCTATTCTGGAACCAGCACCCTCGCCTTGGTGGCTCGTGCTTCTGCATTCTCTCTTGGACTCGTCTATGGAAGCATTAAGCTCAAGGTCCTCAAGGCCAAGGCTAAATCTCATCAGAAGGCTGAAGCAAAGGCTCATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

ATP-synt_E

Protein Analysis

53

Amino Acids

5.49

Weight (kDa)

10.3

Isoelectric Point (pI)

8.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT5G15320 AT5G15320
fragaria_vesca	FvH4_2g40200 FvH4_2g40204 FvH4_6g42921
malus_domestica	MD00G1066700.v1.1 MD10G1061700.v1.1
prunus_persica	Prupe.1G368600_v2.0.a1 Prupe.8G082400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268521 RchiOBHm_Chr6g0302511
rosa_laevigata	RLG00000033803
rosa_roxburghii	Rroxscaffold_7G00165700 Rroxscaffold_7G00199760
rosa_rugosa	Rorug06G0314700
rosa_samantha	Rh6AG427900 Rh6BG474800 Rh6CG440000 Rh6DG427000
rosa_wichuraiana	Rw6G014000 Rw6G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	14, 26, 46
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
AoxI	GGCC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	17, 106
AsuC2I	CCSGG	1 cut(s)	15
AvaII	GGWCC	2 cut(s)	17, 106
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	2 cut(s)	17, 106
BmgT120I	GGNCC	2 cut(s)	17, 106
BmiI	GGNNCC	3 cut(s)	6, 19, 31
BmrFI	CCNGG	1 cut(s)	15
BpuEI	CTTGAG	2 cut(s)	86, 95
BpuMI	CCSGG	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	45, 117
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 26, 46
BseDI	CCNNGG	2 cut(s)	45, 117
BseLI	CCNNNNNNNGG	3 cut(s)	14, 26, 46
BshFI	GGCC	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	3 cut(s)	14, 26, 46
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	116
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	116
BspLI	GGNNCC	3 cut(s)	6, 19, 31
BspT107I	GGYRCC	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	45, 117
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	54
BssT1I	CCWWGG	2 cut(s)	45, 117
Bst2BI	CACGAG	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	5
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	17, 106
CviJI	RGCY	6 cut(s)	53, 100, 116, 122, 140, 152
CviKI_1	RGCY	6 cut(s)	53, 100, 116, 122, 140, 152
DinI	GGCGCC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	45, 117
Eco47I	GGWCC	2 cut(s)	17, 106
Eco57I	CTGAAG	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	45, 117
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	45, 117
FaiI	YATR	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	8
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	78
HpaII	CCGG	1 cut(s)	15
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	12, 28, 46
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	3 cut(s)	21, 50, 119
MseI	TTAA	1 cut(s)	96
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	50
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	15
NlaIV	GGNNCC	3 cut(s)	6, 19, 31
PctI	GAATGC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	1 cut(s)	72
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	72
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	6, 19, 31
PspPI	GGNCC	2 cut(s)	17, 106
PspPPI	RGGWCCY	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	8
Sau96I	GGNCC	2 cut(s)	17, 106
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	2 cut(s)	102, 108
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	17, 106
SmlI	CTYRAG	2 cut(s)	101, 110
SmoI	CTYRAG	2 cut(s)	101, 110
SsiI	CCGC	1 cut(s)	8
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	2 cut(s)	45, 117
TauI	GCSGC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	17, 106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.