Rh6BG474800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005355
Physical Location & Seq
Reverse (-)
68137324 .. 68151050
13727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG474800.1

Sequence Viewer

Length: 471 bp
ATGGCGCCGCCTCCAGGTCCTTACTCCGGCACGAGCACTCTTGCTCTGGTTGCTCGTGCGTCGGCCTTCACTCTCGGTGTGGTTTACGGAAGCGTGAAGCATAAAGTTTTGAAGCAGATTGGCAGCAGATTGGTTGGCAACTTGGCAAGTGAGCCACTTGGGAGTAAAAATATATTCCGCTGCCGGGAGTCGAACCCGGAGATTGACAAATACCAGTTTAAGTTGTGCTACAGCGGATTGGTTGGCAACTTAGAAGAGCAATCACTCTACCATCAATCTCTGTTTTCAACCTTGCCAATCGTGGGCGCCAGGAGTATCTGGGTGAAGGACGAAGATGTTGAAGAGGACCAAAAGTTCCTGTTTTTGATAAGGATGTCCATTGAAGTTGAGGAGCTCGAGCAATTAGTTTGGTGTTGGGTCATTAGGGCTTTGAGTCTCTGTGCTGAGAGCTTGGATTTGCGAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
ATP-synt_E

Protein Analysis

156

Amino Acids

17.48

Weight (kDa)

5.27

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 305
AciI CCGC 3 cut(s) 8, 178, 234
AcyI GRCGYC 2 cut(s) 5, 306
AfiI CCNNNNNNNGG 4 cut(s) 14, 26, 184, 302
AgsI TTSAA 4 cut(s) 112, 288, 341, 383
AjnI CCWGG 2 cut(s) 13, 308
AloI GAACNNNNNNTCC 2 cut(s) 338, 370
AluBI AGCT 2 cut(s) 394, 450
AluI AGCT 2 cut(s) 394, 450
Alw21I GWGCWC 2 cut(s) 38, 396
Alw26I GTCTC 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 2 cut(s) 123, 180
AspLEI GCGC 2 cut(s) 7, 308
AspS9I GGNCC 2 cut(s) 17, 346
AsuC2I CCSGG 2 cut(s) 185, 197
AsuHPI GGTGA 1 cut(s) 334
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 2 cut(s) 17, 346
BanI GGYRCC 2 cut(s) 4, 305
BanII GRGCYC 1 cut(s) 396
BauI CACGAG 2 cut(s) 31, 54
Bbv12I GWGCWC 2 cut(s) 38, 396
BbvI GCAGC 2 cut(s) 135, 167
BccI CCATC 1 cut(s) 279
BciT130I CCWGG 2 cut(s) 15, 310
BcnI CCSGG 2 cut(s) 185, 197
BcoDI GTCTC 1 cut(s) 440
BfmI CTRYAG 1 cut(s) 229
BfoI RGCGCY 2 cut(s) 8, 309
BisI GCNGC 3 cut(s) 8, 124, 181
BlsI GCNGC 3 cut(s) 9, 125, 182
Bme1390I CCNGG 4 cut(s) 15, 185, 197, 310
Bme18I GGWCC 2 cut(s) 17, 346
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 17, 346
BmiI GGNNCC 2 cut(s) 6, 307
BmrFI CCNGG 4 cut(s) 15, 185, 197, 310
BpuMI CCSGG 2 cut(s) 185, 197
BsaHI GRCGYC 2 cut(s) 5, 306
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 26, 184, 302
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 15, 310
BseGI GGATG 1 cut(s) 378
BseLI CCNNNNNNNGG 4 cut(s) 14, 26, 184, 302
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 2 cut(s) 135, 167
BshFI GGCC 1 cut(s) 65
BshNI GGYRCC 2 cut(s) 4, 305
BsiHKAI GWGCWC 2 cut(s) 38, 396
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 3 cut(s) 27, 184, 197
BslI CCNNNNNNNGG 4 cut(s) 14, 26, 184, 302
BsmAI GTCTC 1 cut(s) 440
BsnI GGCC 1 cut(s) 65
BsoBI CYCGRG 1 cut(s) 395
Bsp1286I GDGCHC 2 cut(s) 38, 396
BspACI CCGC 3 cut(s) 8, 178, 234
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 6, 307
BspQI GCTCTTC 1 cut(s) 249
BspT107I GGYRCC 2 cut(s) 4, 305
BsrI ACTGG 1 cut(s) 214
BssNI GRCGYC 2 cut(s) 5, 306
BssSI CACGAG 2 cut(s) 31, 54
Bst2BI CACGAG 2 cut(s) 31, 54
Bst2UI CCWGG 2 cut(s) 15, 310
Bst6I CTCTTC 2 cut(s) 249, 336
BstACI GRCGYC 2 cut(s) 5, 306
BstDEI CTNAG 2 cut(s) 250, 444
BstF5I GGATG 1 cut(s) 378
BstH2I RGCGCY 2 cut(s) 8, 309
BstHHI GCGC 2 cut(s) 7, 308
BstMAI GTCTC 1 cut(s) 440
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 2 cut(s) 15, 310
BstSCI CCNGG 4 cut(s) 13, 183, 195, 308
BstSFI CTRYAG 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 135, 167
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 378
CfoI GCGC 2 cut(s) 7, 308
Cfr13I GGNCC 2 cut(s) 17, 346
CseI GACGC 1 cut(s) 48
CviJI RGCY 5 cut(s) 65, 154, 394, 428, 450
CviKI_1 RGCY 5 cut(s) 65, 154, 394, 428, 450
DdeI CTNAG 2 cut(s) 250, 444
DinI GGCGCC 2 cut(s) 6, 307
Eam1104I CTCTTC 2 cut(s) 249, 336
EarI CTCTTC 2 cut(s) 249, 336
Ecl136II GAGCTC 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 2 cut(s) 17, 346
Eco53kI GAGCTC 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 395
EcoICRI GAGCTC 1 cut(s) 394
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 13, 308
EcoT38I GRGCYC 1 cut(s) 396
EgeI GGCGCC 2 cut(s) 6, 307
EheI GGCGCC 2 cut(s) 6, 307
FaiI YATR 2 cut(s) 102, 173
Fnu4HI GCNGC 3 cut(s) 8, 124, 181
FokI GGATG 1 cut(s) 385
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 3 cut(s) 8, 124, 181
GlaI GCGC 2 cut(s) 6, 307
GluI GCNGC 3 cut(s) 8, 124, 181
HaeII RGCGCY 2 cut(s) 8, 309
HaeIII GGCC 1 cut(s) 65
HapII CCGG 3 cut(s) 27, 184, 197
HgaI GACGC 1 cut(s) 48
HhaI GCGC 2 cut(s) 7, 308
Hin1I GRCGYC 2 cut(s) 5, 306
Hin6I GCGC 2 cut(s) 5, 306
HinP1I GCGC 2 cut(s) 5, 306
HinfI GANTC 2 cut(s) 188, 433
HpaII CCGG 3 cut(s) 27, 184, 197
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 85
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 76, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 250, 444
Hsp92I GRCGYC 2 cut(s) 5, 306
HspAI GCGC 2 cut(s) 5, 306
KasI GGCGCC 2 cut(s) 4, 305
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 2 cut(s) 135, 167
MboII GAAGA 3 cut(s) 266, 344, 353
MhlI GDGCHC 2 cut(s) 38, 396
MluCI AATT 1 cut(s) 401
Mly113I GGCGCC 2 cut(s) 5, 306
MlyI GAGTC 2 cut(s) 197, 442
MnlI CCTC 3 cut(s) 21, 337, 382
MseI TTAA 1 cut(s) 219
MspA1I CMGCKG 2 cut(s) 180, 234
MspI CCGG 3 cut(s) 27, 184, 197
MspR9I CCNGG 4 cut(s) 15, 185, 197, 310
MvaI CCWGG 2 cut(s) 15, 310
MwoI GCNNNNNNNGC 1 cut(s) 50
NarI GGCGCC 2 cut(s) 5, 306
NciI CCSGG 2 cut(s) 185, 197
NlaIV GGNNCC 2 cut(s) 6, 307
PaeR7I CTCGAG 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 249
PkrI GCNGC 3 cut(s) 9, 125, 182
PleI GAGTC 2 cut(s) 196, 441
PluTI GGCGCC 2 cut(s) 8, 309
PpsI GAGTC 2 cut(s) 196, 441
PpuMI RGGWCCY 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 13, 308
PspGI CCWGG 2 cut(s) 13, 308
PspN4I GGNNCC 2 cut(s) 6, 307
PspPI GGNCC 2 cut(s) 17, 346
PspPPI RGGWCCY 1 cut(s) 17
PspXI VCTCGAGB 1 cut(s) 395
SacI GAGCTC 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 3 cut(s) 8, 124, 181
Sau96I GGNCC 2 cut(s) 17, 346
SchI GAGTC 2 cut(s) 197, 442
ScrFI CCNGG 4 cut(s) 15, 185, 197, 310
SduI GDGCHC 2 cut(s) 38, 396
SetI ASST 4 cut(s) 19, 293, 396, 452
SfcI CTRYAG 1 cut(s) 229
SfoI GGCGCC 2 cut(s) 6, 307
Sfr274I CTCGAG 1 cut(s) 395
SinI GGWCC 2 cut(s) 17, 346
SlaI CTCGAG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 1 cut(s) 401
SsiI CCGC 3 cut(s) 8, 178, 234
SspDI GGCGCC 2 cut(s) 4, 305
SstI GAGCTC 1 cut(s) 396
StyD4I CCNGG 4 cut(s) 13, 183, 195, 308
TaqI TCGA 2 cut(s) 191, 396
TasI AATT 1 cut(s) 401
TauI GCSGC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseI GCWGC 2 cut(s) 123, 180
TspGWI ACGGA 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 17, 346
XhoI CTCGAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.