Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005355

Physical Location & Seq

Genomic Coordinates Forward (+)

61954961 .. 61956469

Gene Structure 1509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG427900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGCGCCGCCTCCAGGTCCTTACTCCGGCACGAGCACTCTTGCTCTGGTTGCTCGTGCGTCGGCCTTCACTCTCGGTGTGGTTTACGGAAGCGTGAAGCATAAAGTTTTGAAGGTAAGTATTGGTCCTTGCTTCATTGTCACTCGTTTTTATTCAGATCTGCTTCTTGTTATGCGACCATATTCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

ATP-synt_E

Protein Analysis

63

Amino Acids

6.72

Weight (kDa)

9.9

Isoelectric Point (pI)

22.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT3G01130 AT5G15320 AT5G15320
fragaria_vesca	FvH4_2g40200 FvH4_2g40204 FvH4_6g42921
malus_domestica	MD00G1066700.v1.1 MD10G1061700.v1.1
prunus_persica	Prupe.1G368600_v2.0.a1 Prupe.8G082400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0268521 RchiOBHm_Chr6g0302511
rosa_laevigata	RLG00000033803
rosa_roxburghii	Rroxscaffold_7G00165700 Rroxscaffold_7G00199760
rosa_rugosa	Rorug06G0314700
rosa_samantha	Rh6AG427900 Rh6BG474800 Rh6CG440000 Rh6DG427000
rosa_wichuraiana	Rw6G014000 Rw6G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	14, 26
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	13
Alw21I	GWGCWC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	17, 125
AvaII	GGWCC	2 cut(s)	17, 125
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	2 cut(s)	31, 54
Bbv12I	GWGCWC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	2 cut(s)	17, 125
BmgT120I	GGNCC	2 cut(s)	17, 125
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 26
BseBI	CCWGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	14, 26
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	14, 26
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BssMI	GATC	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	2 cut(s)	31, 54
Bst2BI	CACGAG	2 cut(s)	31, 54
Bst2UI	CCWGG	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	5
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	65
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	17, 125
CseI	GACGC	1 cut(s)	48
CviJI	RGCY	1 cut(s)	65
CviKI_1	RGCY	1 cut(s)	65
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	17, 125
EcoO109I	RGGNCCY	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaiI	YATR	3 cut(s)	102, 173, 181
Fnu4HI	GCNGC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	8
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	189
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	2 cut(s)	76, 106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	3 cut(s)	27, 32, 40
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	38
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	1 cut(s)	21
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	50
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	9
PluTI	GGCGCC	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	17, 125
PspPPI	RGGWCCY	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	157
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	2 cut(s)	17, 125
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	2 cut(s)	19, 117
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	17, 125
SsiI	CCGC	1 cut(s)	8
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	1 cut(s)	13
TauI	GCSGC	1 cut(s)	10
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	102
VpaK11BI	GGWCC	2 cut(s)	17, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.