Rh6DG427000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005355
Physical Location & Seq
Forward (+)
60766060 .. 60778872
12813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG427000.1

Sequence Viewer

Length: 240 bp
ATGGCGCCGCCTCCAGGTCCTTACTCCGGCACGAGCACTCTTGCTCTGGTTGCTCGTGCGTCGGCCTTCACTCTCGGTGTGGTTTACGGAAGCGTGAAGCATAAAGTTTTGAAGGAGTCGACCCTGCGGAGAATCACAAATACCAGTTTAAGTTGTGCTACAGCAGATTGGTTGGCAACTTGGAAGAGCAGAAGGGCTTTGAGTCTCTGTGCTGAGAGCTTGGATTTGCGAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
ATP-synt_E

Protein Analysis

79

Amino Acids

8.5

Weight (kDa)

9.51

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 119
AciI CCGC 2 cut(s) 8, 127
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 14, 26
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 209
AoxI GGCC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 17
AvaII GGWCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 2 cut(s) 31, 54
Bbv12I GWGCWC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 26
Bse1I ACTGG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 14, 26
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 144
BshFI GGCC 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 14, 26
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 38
BspACI CCGC 2 cut(s) 8, 127
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 6
BspQI GCTCTTC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 2 cut(s) 31, 54
Bst2BI CACGAG 2 cut(s) 31, 54
Bst2UI CCWGG 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 159
BsuRI GGCC 1 cut(s) 65
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 17
CseI GACGC 1 cut(s) 48
CviJI RGCY 3 cut(s) 65, 197, 219
CviKI_1 RGCY 3 cut(s) 65, 197, 219
DdeI CTNAG 1 cut(s) 213
DinI GGCGCC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 13
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaiI YATR 1 cut(s) 102
FblI GTMKAC 1 cut(s) 119
Fnu4HI GCNGC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 8
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 8
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 27
HgaI GACGC 1 cut(s) 48
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 3 cut(s) 116, 132, 202
HpaII CCGG 1 cut(s) 27
Hpy166II GTNNAC 2 cut(s) 85, 120
Hpy8I GTNNAC 2 cut(s) 85, 120
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 3 cut(s) 76, 106, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 179
LpnPI CCDG 5 cut(s) 27, 32, 40, 137, 157
MboII GAAGA 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 38
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 125, 211
MnlI CCTC 1 cut(s) 21
MseI TTAA 1 cut(s) 149
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 15
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 50
NarI GGCGCC 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 2 cut(s) 124, 210
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 124, 210
PpuMI RGGWCCY 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 17
PspPPI RGGWCCY 1 cut(s) 17
SalI GTCGAC 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 1 cut(s) 8
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 2 cut(s) 125, 211
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 1 cut(s) 38
SetI ASST 2 cut(s) 19, 221
SfcI CTRYAG 1 cut(s) 159
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 17
SsiI CCGC 2 cut(s) 8, 127
SspDI GGCGCC 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 13
TaqI TCGA 1 cut(s) 119
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 102
VpaK11BI GGWCC 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.