Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0012282

Physical Location & Seq

Genomic Coordinates Reverse (-)

13850269 .. 13851830

Gene Structure 1562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1071600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGTGGGCACGGCGGTGATTGATATGTATGCCAAGTGTGGTGGTGTGGATTTTGCTACGTTGGTTTTTGATGGGCTGGATGTGAAGAATTCAATGTCTTGGAATACTATGATTGATGGGTATATGAAAAATGGGAAGGTTTCGAATGCGGTTGAGCTTTTTGAAAAAATGCTTAACAGAGATGCGGTTTCTTGGACCATGTTGATTGGTGGGTTTGTCAAGAAAGGTCAGTTCGAGCAAGCGTTGGAGTGGTTTAGGGCTGGTTTGATGCATCTCGTGGGAGTTGAACCAGACTATGTGACTATAATTGCTGTAAACGCTGCGTGTGCAGATCTGGGAACGCTTGGTCTAGGCTTGTGGCTAAACCATTTTGTTATGAAGCGAGACTTTAAAGACAATGTTAGGATAAGTAACTCGTTGGTTGATATGTATTCTCGATGTGGTTGTATTGGTTTTGCTCGTCAAGTCTTCGAGAACATGCTGGAAAGGACATTGGTATCATGGAACTCGATGATTGTGGGATTTGCAGTTAATGGGCACGCAAAGGAAGCTCTCGAGTTCTTCAACCTGATGCAGAAGAAAGGGCTCAAGCCAGATGGGGTCAGCTTCACTGGAGCACTCACCGCGTGCAGCCATGCTGGTTTAGTCGATGAGGGGCTCCATTACTTTGATAACATGAAGGGAGTTCACAGAATAACACCCAGAATCGAGCATTATGGATGCATAATCAATCTCTATAGCCGTGCAGGGAGGTTGGAAGATGCCTTGGGTGTAATAGAAAACATGCCGATGAAGCTAAATGAAGTTGTGTTGGGTTCTTTGTTGGCCGATTGTAGAACCATTGGGAACGTCAGTTTAGCTGAAAGATTGATGAAGTACCTCTCTGTGGTTGATCCTAGTGTTGATTCCAACTATGTGCTCCTAGCCAATATATATGCAGCTGCTGGACGGTGGGATGGTGCAAACAAGGTTAGAAAGAAGATGAAAGACCTTGGAGTACAGAAGACACCGGGATTTAGTTATGTTGAGGTTGACTGTAACATTCATGAATTCGTGGCCGGTGATAAATCCCATGTTGACACAGAGTGTATATATTCAACCCTAGGGCTTCTCTCCTTTGAGCTCATATTATGTGGGTATGTTCCAGAAAACATTGTGAGAGAACCGTACAAGTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

394

Amino Acids

43.64

Weight (kDa)

5.89

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	30 - 60	1.8e-08	PPR repeat family
PPR_1	PF12854	30 - 57	4.9e-07	PPR repeat
PPR	PF01535	33 - 60	6.6e-09	PPR repeat
PPR_2	PF13041	165 - 211	4.7e-11	PPR repeat family
PPR	PF01535	166 - 196	4.5e-08	PPR repeat
PPR_long	PF17177	180 - 294	5.4e-06	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	283 - 343	2.6e-16	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05750 AT1G05750
fragaria_vesca	FvH4_3g26660
malus_domestica	MD00G1049500.v1.1 MD00G1071600.v1.1 MD03G1154500.v1.1
prunus_persica	Prupe.6G143700_v2.0.a1
pyrus_communis	pycom03g10830 pycom11g14680
rosa_chinensis	RchiOBHm_Chr5g0048131 RchiOBHm_Chr5g0048161
rosa_laevigata	RLG00000034500
rosa_multiflora	Rmu_sc0001408.1_g000020
rosa_roxburghii	Rroxscaffold_1G00033760
rosa_rugosa	Rorug05G0236900
rosa_samantha	Rh5AG316000 Rh5BG326400 Rh5CG352900
rosa_wichuraiana	Rw5G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	626
AciI	CCGC	4 cut(s)	14, 149, 185, 624
AclWI	GGATC	1 cut(s)	887
AcoI	YGGCCR	2 cut(s)	825, 1056
AcsI	RAATTY	2 cut(s)	88, 1049
AdeI	CACNNNGTG	2 cut(s)	627, 1086
AfaI	GTAC	3 cut(s)	878, 999, 1169
AfiI	CCNNNNNNNGG	1 cut(s)	886
AgsI	TTSAA	5 cut(s)	93, 164, 287, 565, 1098
AleI	CACNNNNGTG	1 cut(s)	14
AluBI	AGCT	7 cut(s)	157, 551, 606, 796, 860, 941, 1123
AluI	AGCT	7 cut(s)	157, 551, 606, 796, 860, 941, 1123
Alw21I	GWGCWC	3 cut(s)	619, 921, 1125
Alw26I	GTCTC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	887
AlwNI	CAGNNNCTG	1 cut(s)	944
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	2 cut(s)	825, 1056
ApeKI	GCWGC	4 cut(s)	320, 630, 938, 941
ApoI	RAATTY	2 cut(s)	88, 1049
AspA2I	CCTAGG	1 cut(s)	1102
AspS9I	GGNCC	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	1011
AsuHPI	GGTGA	3 cut(s)	28, 613, 1073
AsuII	TTCGAA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	195
AvrII	CCTAGG	1 cut(s)	1102
BaeGI	GKGCMC	2 cut(s)	11, 540
BaeI	ACNNNNGTAYC	2 cut(s)	480, 513
BanII	GRGCYC	3 cut(s)	588, 660, 1125
BauI	CACGAG	1 cut(s)	275
BbsI	GAAGAC	2 cut(s)	460, 1010
Bbv12I	GWGCWC	3 cut(s)	619, 921, 1125
BbvI	GCAGC	4 cut(s)	307, 642, 928, 950
BccI	CCATC	4 cut(s)	65, 110, 590, 950
BceAI	ACGGC	2 cut(s)	27, 726
BcnI	CCSGG	1 cut(s)	1011
BcoDI	GTCTC	1 cut(s)	378
BfaI	CTAG	4 cut(s)	350, 897, 923, 1103
BfmI	CTRYAG	1 cut(s)	736
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	4 cut(s)	321, 631, 939, 942
BlnI	CCTAGG	1 cut(s)	1102
BlsI	GCNGC	4 cut(s)	322, 632, 940, 943
Bme1390I	CCNGG	1 cut(s)	1011
Bme18I	GGWCC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	659
BmrFI	CCNGG	1 cut(s)	1011
BmsI	GCATC	6 cut(s)	172, 258, 280, 561, 710, 751
BpiI	GAAGAC	2 cut(s)	460, 1010
BpmI	CTGGAG	1 cut(s)	633
Bpu14I	TTCGAA	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	1 cut(s)	1011
BsaJI	CCNNGG	3 cut(s)	765, 991, 1102
Bsc4I	CCNNNNNNNGG	1 cut(s)	886
Bse118I	RCCGGY	1 cut(s)	1058
Bse1I	ACTGG	1 cut(s)	616
BseDI	CCNNGG	3 cut(s)	765, 991, 1102
BseGI	GGATG	3 cut(s)	85, 725, 961
BseLI	CCNNNNNNNGG	1 cut(s)	886
BseNI	ACTGG	1 cut(s)	616
BseSI	GKGCMC	2 cut(s)	11, 540
BseXI	GCAGC	4 cut(s)	307, 642, 928, 950
BsgI	GTGCAG	3 cut(s)	348, 649, 765
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	2 cut(s)	827, 1058
BsiHKAI	GWGCWC	3 cut(s)	619, 921, 1125
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	2 cut(s)	1010, 1059
BslI	CCNNNNNNNGG	1 cut(s)	886
BsmAI	GTCTC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	827, 1058
BsoBI	CYCGRG	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	7 cut(s)	11, 540, 588, 619, 660, 921, 1125
Bsp143I	GATC	2 cut(s)	331, 892
BspACI	CCGC	4 cut(s)	14, 149, 185, 624
BspANI	GGCC	2 cut(s)	827, 1058
BspFNI	CGCG	1 cut(s)	626
BspHI	TCATGA	1 cut(s)	1045
BspLI	GGNNCC	1 cut(s)	659
BspPI	GGATC	1 cut(s)	887
BspT104I	TTCGAA	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	1058
BsrI	ACTGG	1 cut(s)	616
BssAI	RCCGGY	1 cut(s)	1058
BssECI	CCNNGG	3 cut(s)	765, 991, 1102
BssMI	GATC	2 cut(s)	331, 892
BssSI	CACGAG	1 cut(s)	275
BssT1I	CCWWGG	3 cut(s)	765, 991, 1102
Bst2BI	CACGAG	1 cut(s)	275
Bst4CI	ACNGT	3 cut(s)	951, 1037, 1167
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	240, 540, 628
BstF5I	GGATG	3 cut(s)	85, 725, 961
BstFNI	CGCG	1 cut(s)	626
BstKTI	GATC	2 cut(s)	334, 895
BstMAI	GTCTC	1 cut(s)	378
BstMBI	GATC	2 cut(s)	331, 892
BstMWI	GCNNNNNNNGC	5 cut(s)	317, 326, 548, 623, 793
BstNSI	RCATGY	2 cut(s)	481, 787
BstSCI	CCNGG	1 cut(s)	1009
BstSFI	CTRYAG	1 cut(s)	736
BstSLI	GKGCMC	2 cut(s)	11, 540
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	4 cut(s)	307, 642, 928, 950
BstV2I	GAAGAC	2 cut(s)	460, 1010
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	827, 1058
BtsCI	GGATG	3 cut(s)	85, 725, 961
BtsIMutI	CAGTG	1 cut(s)	609
Cac8I	GCNNGC	3 cut(s)	240, 540, 628
CaiI	CAGNNNCTG	1 cut(s)	944
CciI	TCATGA	1 cut(s)	1045
Cfr10I	RCCGGY	1 cut(s)	1058
Cfr13I	GGNCC	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	877, 998, 1168
CspCI	CAANNNNNGTGG	2 cut(s)	22, 57
CviAII	CATG	8 cut(s)	199, 478, 501, 635, 676, 784, 1046, 1073
CviQI	GTAC	3 cut(s)	877, 998, 1168
DpnI	GATC	2 cut(s)	333, 894
DpnII	GATC	2 cut(s)	331, 892
DraI	TTTAAA	1 cut(s)	391
DraIII	CACNNNGTG	2 cut(s)	627, 1086
EaeI	YGGCCR	2 cut(s)	825, 1056
Ecl136II	GAGCTC	1 cut(s)	1123
Eco130I	CCWWGG	3 cut(s)	765, 991, 1102
Eco24I	GRGCYC	3 cut(s)	588, 660, 1125
Eco47I	GGWCC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	1123
Eco88I	CYCGRG	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	1123
EcoRI	GAATTC	2 cut(s)	88, 1049
EcoT14I	CCWWGG	3 cut(s)	765, 991, 1102
EcoT22I	ATGCAT	2 cut(s)	273, 725
EcoT38I	GRGCYC	3 cut(s)	588, 660, 1125
ErhI	CCWWGG	3 cut(s)	765, 991, 1102
FaeI	CATG	8 cut(s)	202, 481, 504, 638, 679, 787, 1049, 1076
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FatI	CATG	8 cut(s)	198, 477, 500, 634, 675, 783, 1045, 1072
Fnu4HI	GCNGC	4 cut(s)	321, 631, 939, 942
FokI	GGATG	3 cut(s)	92, 732, 968
FriOI	GRGCYC	3 cut(s)	588, 660, 1125
Fsp4HI	GCNGC	4 cut(s)	321, 631, 939, 942
FspBI	CTAG	4 cut(s)	350, 897, 923, 1103
GluI	GCNGC	4 cut(s)	321, 631, 939, 942
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	2 cut(s)	827, 1058
HapII	CCGG	2 cut(s)	1010, 1059
Hin1II	CATG	8 cut(s)	202, 481, 504, 638, 679, 787, 1049, 1076
HincII	GTYRAC	2 cut(s)	1033, 1078
HindII	GTYRAC	2 cut(s)	1033, 1078
HinfI	GANTC	2 cut(s)	705, 905
HpaII	CCGG	2 cut(s)	1010, 1059
HphI	GGTGA	3 cut(s)	28, 613, 1073
Hpy166II	GTNNAC	4 cut(s)	316, 688, 1033, 1078
Hpy188III	TCNNGA	6 cut(s)	220, 435, 472, 554, 1046, 1145
Hpy8I	GTNNAC	4 cut(s)	316, 688, 1033, 1078
HpyAV	CCTTC	2 cut(s)	130, 673
HpyCH4III	ACNGT	3 cut(s)	951, 1037, 1167
HpyCH4IV	ACGT	2 cut(s)	59, 849
HpyCH4V	TGCA	9 cut(s)	271, 329, 527, 574, 630, 723, 746, 938, 962
HpyF10VI	GCNNNNNNNGC	5 cut(s)	317, 326, 548, 623, 793
HpySE526I	ACGT	2 cut(s)	59, 849
Hsp92II	CATG	8 cut(s)	202, 481, 504, 638, 679, 787, 1049, 1076
Kzo9I	GATC	2 cut(s)	331, 892
LmnI	GCTCC	3 cut(s)	614, 663, 924
Lsp1109I	GCAGC	4 cut(s)	307, 642, 928, 950
LweI	GCATC	6 cut(s)	172, 258, 280, 561, 710, 751
MaeI	CTAG	4 cut(s)	350, 897, 923, 1103
MaeII	ACGT	2 cut(s)	59, 849
MaeIII	GTNAC	3 cut(s)	298, 410, 1037
MalI	GATC	2 cut(s)	333, 894
MboI	GATC	2 cut(s)	331, 892
MboII	GAAGA	7 cut(s)	97, 460, 553, 589, 770, 991, 1015
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	7 cut(s)	11, 540, 588, 619, 660, 921, 1125
MluCI	AATT	3 cut(s)	88, 306, 1049
MmeI	TCCRAC	3 cut(s)	225, 735, 933
MnlI	CCTC	4 cut(s)	646, 744, 890, 1021
Mph1103I	ATGCAT	2 cut(s)	273, 725
MseI	TTAA	3 cut(s)	174, 390, 531
MslI	CAYNNNNRTG	2 cut(s)	14, 788
MspA1I	CMGCKG	1 cut(s)	941
MspI	CCGG	2 cut(s)	1010, 1059
MspR9I	CCNGG	1 cut(s)	1011
Mva1269I	GAATGC	1 cut(s)	151
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	5 cut(s)	317, 326, 548, 623, 793
NciI	CCSGG	1 cut(s)	1011
NdeII	GATC	2 cut(s)	331, 892
NlaIII	CATG	8 cut(s)	202, 481, 504, 638, 679, 787, 1049, 1076
NlaIV	GGNNCC	1 cut(s)	659
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	2 cut(s)	273, 725
NspI	RCATGY	2 cut(s)	481, 787
NspV	TTCGAA	1 cut(s)	143
OliI	CACNNNNGTG	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	554
PagI	TCATGA	1 cut(s)	1045
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	705, 905
PkrI	GCNGC	4 cut(s)	322, 632, 940, 943
Psp124BI	GAGCTC	1 cut(s)	1125
PspN4I	GGNNCC	1 cut(s)	659
PspPI	GGNCC	1 cut(s)	195
PstNI	CAGNNNCTG	1 cut(s)	944
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	941
RsaI	GTAC	3 cut(s)	878, 999, 1169
RsaNI	GTAC	3 cut(s)	877, 998, 1168
RseI	CAYNNNNRTG	2 cut(s)	14, 788
SacI	GAGCTC	1 cut(s)	1125
SaqAI	TTAA	3 cut(s)	174, 390, 531
SatI	GCNGC	4 cut(s)	321, 631, 939, 942
Sau3AI	GATC	2 cut(s)	331, 892
Sau96I	GGNCC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	1011
SduI	GDGCHC	7 cut(s)	11, 540, 588, 619, 660, 921, 1125
SfaNI	GCATC	6 cut(s)	172, 258, 280, 561, 710, 751
SfcI	CTRYAG	1 cut(s)	736
Sfr274I	CTCGAG	1 cut(s)	554
SfuI	TTCGAA	1 cut(s)	143
SinI	GGWCC	1 cut(s)	195
SlaI	CTCGAG	1 cut(s)	554
SmiMI	CAYNNNNRTG	2 cut(s)	14, 788
SmlI	CTYRAG	2 cut(s)	554, 587
SmoI	CTYRAG	2 cut(s)	554, 587
Sse9I	AATT	3 cut(s)	88, 306, 1049
SsiI	CCGC	4 cut(s)	14, 149, 185, 624
SspMI	CTAG	4 cut(s)	350, 897, 923, 1103
SstI	GAGCTC	1 cut(s)	1125
StyD4I	CCNGG	1 cut(s)	1009
StyI	CCWWGG	3 cut(s)	765, 991, 1102
TaaI	ACNGT	3 cut(s)	951, 1037, 1167
TaiI	ACGT	2 cut(s)	62, 852
TaqI	TCGA	8 cut(s)	143, 234, 436, 471, 509, 555, 648, 708
TasI	AATT	3 cut(s)	88, 306, 1049
TatI	WGTACW	1 cut(s)	997
TfiI	GAWTC	2 cut(s)	705, 905
Tru1I	TTAA	3 cut(s)	174, 390, 531
Tru9I	TTAA	3 cut(s)	174, 390, 531
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	4 cut(s)	320, 630, 938, 941
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	9 cut(s)	140, 392, 692, 806, 816, 887, 998, 1034, 1062
TspRI	CASTG	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	195
XapI	RAATTY	2 cut(s)	88, 1049
XceI	RCATGY	2 cut(s)	481, 787
XhoI	CTCGAG	1 cut(s)	554
XmaJI	CCTAGG	1 cut(s)	1102
XspI	CTAG	4 cut(s)	350, 897, 923, 1103
Zsp2I	ATGCAT	2 cut(s)	273, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.