Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012282

Physical Location & Seq

Genomic Coordinates Reverse (-)

44801491 .. 44801940

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32597

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGCAGCGCCACAACCCAAGTCCATGTAGTCCCATTTTTGGGCCGCAGGTATCGGCCCACTGGCTCAGACCCACTAAAGGATTTTGCCAAACTATGTTTTGGGCTCAAACACAATGTTCGGATAAGTAACTCGTTGATTGATATGTATTCTCGATGTGGATGTATTGATTTTGCTAGGCAAGTGTTTGACAACATGCCTGATCGGACCTTGGTTTCATGGAACTCTATGATTGTGGGTTTTGCGGCGAATGGGCATGCAGAGGAAGCTCTTGTGTTCTTCAACCTGATGCAGAAGGAGGGGTTCAAGCCGGACGGTGTCAGCTTCACTGGGGCTCTTACTGCATGCAGCCATGCTGGTTTAGTCGATGAGGGGCTACGTTTCTTTGATAACATGAAGAGAATACACAAAATAACCCCGAGAATTGAGCATTATGGCTGGCATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

149

Amino Acids

16.8

Weight (kDa)

8.77

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	71 - 117	2.1e-11	PPR repeat family
PPR	PF01535	72 - 102	5.4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05750 AT1G05750
fragaria_vesca	FvH4_3g26660
malus_domestica	MD00G1049500.v1.1 MD00G1071600.v1.1 MD03G1154500.v1.1
prunus_persica	Prupe.6G143700_v2.0.a1
pyrus_communis	pycom03g10830 pycom11g14680
rosa_chinensis	RchiOBHm_Chr5g0048131 RchiOBHm_Chr5g0048161
rosa_laevigata	RLG00000034500
rosa_multiflora	Rmu_sc0001408.1_g000020
rosa_roxburghii	Rroxscaffold_1G00033760
rosa_rugosa	Rorug05G0236900
rosa_samantha	Rh5AG316000 Rh5BG326400 Rh5CG352900
rosa_wichuraiana	Rw5G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AciI	CCGC	2 cut(s)	46, 245
AfiI	CCNNNNNNNGG	3 cut(s)	40, 41, 79
AgsI	TTSAA	2 cut(s)	283, 307
AluBI	AGCT	2 cut(s)	269, 324
AluI	AGCT	2 cut(s)	269, 324
Ama87I	CYCGRG	1 cut(s)	418
AoxI	GGCC	2 cut(s)	43, 56
ApeKI	GCWGC	2 cut(s)	6, 348
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	43, 57, 207
AvaI	CYCGRG	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	207
BanII	GRGCYC	2 cut(s)	108, 337
BbvI	GCAGC	2 cut(s)	18, 360
BfaI	CTAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	39
BisI	GCNGC	4 cut(s)	7, 46, 246, 349
BlsI	GCNGC	4 cut(s)	8, 47, 247, 350
Bme18I	GGWCC	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	418
BmgT120I	GGNCC	3 cut(s)	43, 57, 207
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	279
BmuI	ACTGGG	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 41, 79
Bse1I	ACTGG	2 cut(s)	67, 334
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	3 cut(s)	40, 41, 79
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	67, 334
BseXI	GCAGC	2 cut(s)	18, 360
BshFI	GGCC	2 cut(s)	45, 58
BsiHKCI	CYCGRG	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	3 cut(s)	40, 41, 79
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	2 cut(s)	45, 58
BsoBI	CYCGRG	1 cut(s)	418
Bsp1286I	GDGCHC	2 cut(s)	108, 337
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	2 cut(s)	46, 245
BspANI	GGCC	2 cut(s)	45, 58
BspCNI	CTCAG	1 cut(s)	80
BspMI	ACCTGC	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	67, 334
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	258, 346, 440
BstDEI	CTNAG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 341
BstNSI	RCATGY	3 cut(s)	199, 260, 348
BstV1I	GCAGC	2 cut(s)	18, 360
BsuRI	GGCC	2 cut(s)	45, 58
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	60, 327
BveI	ACCTGC	1 cut(s)	39
Cac8I	GCNNGC	3 cut(s)	258, 346, 440
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	3 cut(s)	43, 57, 207
CviAII	CATG	7 cut(s)	26, 196, 219, 257, 345, 353, 394
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	2 cut(s)	108, 337
Eco47I	GGWCC	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	2 cut(s)	108, 337
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	7 cut(s)	29, 199, 222, 260, 348, 356, 397
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	7 cut(s)	25, 195, 218, 256, 344, 352, 393
Fnu4HI	GCNGC	4 cut(s)	7, 46, 246, 349
FokI	GGATG	1 cut(s)	174
FriOI	GRGCYC	2 cut(s)	108, 337
Fsp4HI	GCNGC	4 cut(s)	7, 46, 246, 349
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	4 cut(s)	7, 46, 246, 349
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	45, 58
HapII	CCGG	1 cut(s)	311
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	7 cut(s)	29, 199, 222, 260, 348, 356, 397
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	311
Hpy188I	TCNGA	3 cut(s)	70, 123, 207
Hpy188III	TCNNGA	1 cut(s)	153
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	4 cut(s)	260, 292, 344, 348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 341
HpyF3I	CTNAG	1 cut(s)	67
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	7 cut(s)	29, 199, 222, 260, 348, 356, 397
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	8 cut(s)	34, 48, 213, 299, 315, 324, 342, 424
Lsp1109I	GCAGC	2 cut(s)	18, 360
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	2 cut(s)	271, 409
MhlI	GDGCHC	2 cut(s)	108, 337
MluCI	AATT	1 cut(s)	423
MnlI	CCTC	3 cut(s)	256, 292, 364
MspI	CCGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	266, 341
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	7 cut(s)	29, 199, 222, 260, 348, 356, 397
NspI	RCATGY	3 cut(s)	199, 260, 348
PaeI	GCATGC	2 cut(s)	260, 348
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	4 cut(s)	8, 47, 247, 350
PspPI	GGNCC	3 cut(s)	43, 57, 207
PsyI	GACNNNGTC	1 cut(s)	317
SatI	GCNGC	4 cut(s)	7, 46, 246, 349
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	3 cut(s)	43, 57, 207
SduI	GDGCHC	2 cut(s)	108, 337
SetI	ASST	6 cut(s)	53, 212, 271, 288, 326, 382
SfaNI	GCATC	1 cut(s)	279
SinI	GGWCC	1 cut(s)	207
SphI	GCATGC	2 cut(s)	260, 348
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	2 cut(s)	46, 245
SspMI	CTAG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	2 cut(s)	154, 366
TasI	AATT	1 cut(s)	423
TauI	GCSGC	2 cut(s)	48, 248
TscAI	CASTG	2 cut(s)	67, 334
TseI	GCWGC	2 cut(s)	6, 348
TspDTI	ATGAA	2 cut(s)	207, 410
TspRI	CASTG	2 cut(s)	67, 334
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	207
XceI	RCATGY	3 cut(s)	199, 260, 348
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.