Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012282

Physical Location & Seq

Genomic Coordinates Reverse (-)

24924269 .. 24928470

Gene Structure 4202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0236900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGAAAAGATCGAAACGGCGCCGTTCTGGAGAAAGCAAGCAAAAGCTCAGACAAAGACGACGGAAGCGAAAGAAAATCCGGCAAATCCACAGAGCTTTCCGATTCCCGCGACTCCGGAGAGGAAACCAGGCGCAGTAAATCGAGAAGAAAAGCGCGGGAAGTCTCCGAATCGAGCGATGAGGAGAAGCACGCGCGGAGGAGGAGGAGGAAGAGGAAGTCGCGGCGGCGGTACAGTAGCAGCGACGACGATTCGGATTCGGAGTCGGAAGAGTCCGAGGAGAGCGGGTCGGATTCGGGTTCGGAGTCGGTGAGCGAGGGCGGCAGCGATAGCGAGAGTGAGCGGCGGCGGAAGAGGAGGGAGAGGAAGAGGAGGAGAGAGAAAGAGGAGAGGAGGAGGAGAGAGAAGGAGAAGAAGAGGAGGAGGAGAGAGAGAGAAGAGGAGAAGAAGAAGAAGGAGAGGAGGAAGAAGAGGAGGAAGGAGAAGAAGGAGAAAGGTAAGAAAGGAGCGGTCACAGATTCTTGGGGGAAGTATGGGATTATCAGAGAGACTGATATGTGGAACAAACGACCGGAGTTTACTGCATGGTTGGCAGAAGTAAAACAGGTGAACCTGGAGCATCTGGCAAATTGGGAAGAGAAGCAGATGTTCAAACAGTTCATGGAAGATCACAACACAGCTACATTCCCTTCCAAAAAGTATTATAGTCTTGATGCTTATTACAGGCATAAAATGGAAAAGGAAATGAAAAAAGGTATTAAAAAGGTTGTGGAAACAGAGCGTACTGTATTCAATGATGAGGAAGTGCGACGGCAAGAAATGATGCGAGTCCGTGAAAAACAAAAGGAAGAAGAAGTAGAAGCTCTGAAGTGCTCTATGCAGAGTGGACTGGCACAAGCAATGAAAGAGCAAGCTCAACTCCGGGAAGAGATGGCTTACCAGTACAAGATCGGAAACTTTGAGGCTGCTGCTGCAATCCAGAGAAGGTTGGACCCTGATGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

335

Amino Acids

40.05

Weight (kDa)

9.75

Isoelectric Point (pI)

91.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05750 AT1G05750
fragaria_vesca	FvH4_3g26660
malus_domestica	MD00G1049500.v1.1 MD00G1071600.v1.1 MD03G1154500.v1.1
prunus_persica	Prupe.6G143700_v2.0.a1
pyrus_communis	pycom03g10830 pycom11g14680
rosa_chinensis	RchiOBHm_Chr5g0048131 RchiOBHm_Chr5g0048161
rosa_laevigata	RLG00000034500
rosa_multiflora	Rmu_sc0001408.1_g000020
rosa_roxburghii	Rroxscaffold_1G00033760
rosa_rugosa	Rorug05G0236900
rosa_samantha	Rh5AG316000 Rh5BG326400 Rh5CG352900
rosa_wichuraiana	Rw5G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccBSI	CCGCTC	3 cut(s)	285, 343, 509
AccII	CGCG	5 cut(s)	111, 157, 194, 196, 223
AccIII	TCCGGA	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	887
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	3 cut(s)	233, 784, 944
AgsI	TTSAA	2 cut(s)	652, 793
AjnI	CCWGG	2 cut(s)	128, 612
AluBI	AGCT	5 cut(s)	48, 97, 680, 863, 914
AluI	AGCT	5 cut(s)	48, 97, 680, 863, 914
Alw21I	GWGCWC	1 cut(s)	875
Alw26I	GTCTC	2 cut(s)	169, 542
Aor13HI	TCCGGA	1 cut(s)	116
ApeKI	GCWGC	5 cut(s)	240, 324, 965, 968, 971
AspLEI	GCGC	4 cut(s)	23, 135, 157, 196
AspS9I	GGNCC	1 cut(s)	991
AsuC2I	CCSGG	1 cut(s)	923
AsuHPI	GGTGA	2 cut(s)	322, 619
AvaII	GGWCC	1 cut(s)	991
BanI	GGYRCC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	875
BbvI	GCAGC	5 cut(s)	252, 336, 952, 955, 958
BccI	CCATC	1 cut(s)	925
BceAI	ACGGC	3 cut(s)	8, 34, 827
BciT130I	CCWGG	2 cut(s)	130, 614
BcnI	CCSGG	1 cut(s)	923
BcoDI	GTCTC	2 cut(s)	169, 542
BfoI	RGCGCY	1 cut(s)	24
Bme1390I	CCNGG	3 cut(s)	130, 614, 923
Bme18I	GGWCC	1 cut(s)	991
BmgT120I	GGNCC	1 cut(s)	991
BmiI	GGNNCC	2 cut(s)	22, 993
BmrFI	CCNGG	3 cut(s)	130, 614, 923
BmsI	GCATC	4 cut(s)	628, 703, 813, 988
BpmI	CTGGAG	2 cut(s)	50, 635
BpuMI	CCSGG	1 cut(s)	923
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	2 cut(s)	116, 571
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bse1I	ACTGG	2 cut(s)	894, 940
Bse3DI	GCAATG	1 cut(s)	906
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	2 cut(s)	130, 614
BseDI	CCNNGG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	906
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	894, 940
BseXI	GCAGC	5 cut(s)	252, 336, 952, 955, 958
Bsh1236I	CGCG	5 cut(s)	111, 157, 194, 196, 223
Bsh1285I	CGRYCG	1 cut(s)	572
BshNI	GGYRCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	572
BsiHKAI	GWGCWC	1 cut(s)	875
BsiSI	CCGG	4 cut(s)	81, 117, 572, 922
BsmAI	GTCTC	2 cut(s)	169, 542
Bsp1286I	GDGCHC	1 cut(s)	875
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	10, 667, 948
BspCNI	CTCAG	1 cut(s)	62
BspEI	TCCGGA	1 cut(s)	116
BspFNI	CGCG	5 cut(s)	111, 157, 194, 196, 223
BspLI	GGNNCC	2 cut(s)	22, 993
BspT107I	GGYRCC	1 cut(s)	20
BsrBI	CCGCTC	3 cut(s)	285, 343, 509
BsrDI	GCAATG	1 cut(s)	906
BsrI	ACTGG	2 cut(s)	894, 940
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	10, 667, 948
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	130, 614
Bst4CI	ACNGT	3 cut(s)	236, 657, 787
Bst6I	CTCTTC	9 cut(s)	206, 264, 347, 362, 410, 432, 464, 630, 921
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	40, 192, 912
BstDEI	CTNAG	1 cut(s)	49
BstFNI	CGCG	5 cut(s)	111, 157, 194, 196, 223
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	4 cut(s)	23, 135, 157, 196
BstKTI	GATC	3 cut(s)	13, 670, 951
BstMAI	GTCTC	2 cut(s)	169, 542
BstMBI	GATC	3 cut(s)	10, 667, 948
BstMCI	CGRYCG	1 cut(s)	572
BstMWI	GCNNNNNNNGC	4 cut(s)	321, 330, 590, 971
BstNI	CCWGG	2 cut(s)	130, 614
BstSCI	CCNGG	3 cut(s)	128, 612, 921
BstUI	CGCG	5 cut(s)	111, 157, 194, 196, 223
BstV1I	GCAGC	5 cut(s)	252, 336, 952, 955, 958
BtgZI	GCGATG	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	40, 192, 912
CfoI	GCGC	4 cut(s)	23, 135, 157, 196
Cfr13I	GGNCC	1 cut(s)	991
Csp6I	GTAC	3 cut(s)	232, 783, 943
CviAII	CATG	2 cut(s)	585, 661
CviJI	RGCY	7 cut(s)	48, 97, 680, 863, 914, 935, 965
CviKI_1	RGCY	7 cut(s)	48, 97, 680, 863, 914, 935, 965
CviQI	GTAC	3 cut(s)	232, 783, 943
DdeI	CTNAG	1 cut(s)	49
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	3 cut(s)	12, 669, 950
DpnII	GATC	3 cut(s)	10, 667, 948
Eam1104I	CTCTTC	9 cut(s)	206, 264, 347, 362, 410, 432, 464, 630, 921
EarI	CTCTTC	9 cut(s)	206, 264, 347, 362, 410, 432, 464, 630, 921
EciI	GGCGGA	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	991
Eco57I	CTGAAG	1 cut(s)	887
EcoRII	CCWGG	2 cut(s)	128, 612
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaeI	CATG	2 cut(s)	588, 664
FaiI	YATR	7 cut(s)	534, 557, 586, 662, 705, 729, 878
FatI	CATG	2 cut(s)	584, 660
FauI	CCCGC	3 cut(s)	116, 150, 278
GlaI	GCGC	4 cut(s)	22, 134, 156, 195
GsuI	CTGGAG	2 cut(s)	50, 635
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	4 cut(s)	81, 117, 572, 922
HhaI	GCGC	4 cut(s)	23, 135, 157, 196
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	588, 664
Hin6I	GCGC	4 cut(s)	21, 133, 155, 194
HinP1I	GCGC	4 cut(s)	21, 133, 155, 194
HpaII	CCGG	4 cut(s)	81, 117, 572, 922
HphI	GGTGA	2 cut(s)	322, 619
Hpy166II	GTNNAC	3 cut(s)	579, 610, 887
Hpy188III	TCNNGA	5 cut(s)	29, 117, 144, 710, 979
Hpy8I	GTNNAC	3 cut(s)	579, 610, 887
Hpy99I	CGWCG	4 cut(s)	65, 248, 251, 813
HpyAV	CCTTC	6 cut(s)	400, 448, 472, 481, 699, 978
HpyCH4III	ACNGT	3 cut(s)	236, 657, 787
HpyCH4V	TGCA	4 cut(s)	584, 880, 974, 1001
HpyF10VI	GCNNNNNNNGC	4 cut(s)	321, 330, 590, 971
HpyF3I	CTNAG	1 cut(s)	49
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	588, 664
HspAI	GCGC	4 cut(s)	21, 133, 155, 194
KasI	GGCGCC	1 cut(s)	20
Kpn2I	TCCGGA	1 cut(s)	116
Kzo9I	GATC	3 cut(s)	10, 667, 948
LmnI	GCTCC	2 cut(s)	506, 616
Lsp1109I	GCAGC	5 cut(s)	252, 336, 952, 955, 958
LweI	GCATC	4 cut(s)	628, 703, 813, 988
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	3 cut(s)	12, 669, 950
MbiI	CCGCTC	3 cut(s)	285, 343, 509
MboI	GATC	3 cut(s)	10, 667, 948
MhlI	GDGCHC	1 cut(s)	875
MluCI	AATT	1 cut(s)	628
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	5 cut(s)	107, 272, 281, 314, 837
MmeI	TCCRAC	3 cut(s)	246, 270, 969
MroI	TCCGGA	1 cut(s)	116
MseI	TTAA	1 cut(s)	759
MspI	CCGG	4 cut(s)	81, 117, 572, 922
MspR9I	CCNGG	3 cut(s)	130, 614, 923
MvaI	CCWGG	2 cut(s)	130, 614
MvnI	CGCG	5 cut(s)	111, 157, 194, 196, 223
MwoI	GCNNNNNNNGC	4 cut(s)	321, 330, 590, 971
NarI	GGCGCC	1 cut(s)	21
NciI	CCSGG	1 cut(s)	923
NdeII	GATC	3 cut(s)	10, 667, 948
NlaIII	CATG	2 cut(s)	588, 664
NlaIV	GGNNCC	2 cut(s)	22, 993
NmuCI	GTSAC	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	6 cut(s)	104, 170, 251, 257, 293, 518
PfoI	TCCNGGA	1 cut(s)	921
PleI	GAGTC	5 cut(s)	107, 271, 280, 313, 836
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	5 cut(s)	107, 271, 280, 313, 836
Psp6I	CCWGG	2 cut(s)	128, 612
PspGI	CCWGG	2 cut(s)	128, 612
PspN4I	GGNNCC	2 cut(s)	22, 993
PspPI	GGNCC	1 cut(s)	991
RsaI	GTAC	3 cut(s)	233, 784, 944
RsaNI	GTAC	3 cut(s)	232, 783, 943
SaqAI	TTAA	1 cut(s)	759
Sau3AI	GATC	3 cut(s)	10, 667, 948
Sau96I	GGNCC	1 cut(s)	991
SchI	GAGTC	5 cut(s)	107, 272, 281, 314, 837
ScrFI	CCNGG	3 cut(s)	130, 614, 923
SduI	GDGCHC	1 cut(s)	875
SfaNI	GCATC	4 cut(s)	628, 703, 813, 988
SfoI	GGCGCC	1 cut(s)	22
SinI	GGWCC	1 cut(s)	991
Sse9I	AATT	1 cut(s)	628
SspDI	GGCGCC	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	128, 612, 921
TaaI	ACNGT	3 cut(s)	236, 657, 787
TaqI	TCGA	3 cut(s)	13, 143, 173
TasI	AATT	1 cut(s)	628
TatI	WGTACW	1 cut(s)	942
TauI	GCSGC	5 cut(s)	226, 229, 324, 346, 349
TfiI	GAWTC	6 cut(s)	104, 170, 251, 257, 293, 518
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	5 cut(s)	240, 324, 965, 968, 971
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	649, 761, 917
TspGWI	ACGGA	2 cut(s)	78, 821
VpaK11BI	GGWCC	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.