Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G05750 AT1G05750 |
| fragaria_vesca | FvH4_3g26660 |
| malus_domestica | MD00G1049500.v1.1 MD00G1071600.v1.1 MD03G1154500.v1.1 |
| prunus_persica | Prupe.6G143700_v2.0.a1 |
| pyrus_communis | pycom03g10830 pycom11g14680 |
| rosa_chinensis | RchiOBHm_Chr5g0048131 RchiOBHm_Chr5g0048161 |
| rosa_laevigata | RLG00000034500 |
| rosa_multiflora | Rmu_sc0001408.1_g000020 |
| rosa_roxburghii | Rroxscaffold_1G00033760 |
| rosa_rugosa | Rorug05G0236900 |
| rosa_samantha | Rh5AG316000 Rh5BG326400 Rh5CG352900 |
| rosa_wichuraiana | Rw5G029620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1529 |
| AarI | CACCTGC | 1 cut(s) | 634 |
| Acc36I | ACCTGC | 1 cut(s) | 634 |
| AccB1I | GGYRCC | 1 cut(s) | 1378 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 323 |
| AciI | CCGC | 4 cut(s) | 12, 21, 576, 899 |
| AclWI | GGATC | 2 cut(s) | 1259, 1272 |
| AcsI | RAATTY | 2 cut(s) | 466, 1421 |
| AcyI | GRCGYC | 1 cut(s) | 604 |
| AfaI | GTAC | 2 cut(s) | 500, 1250 |
| AfeI | AGCGCT | 1 cut(s) | 621 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 323 |
| AgeI | ACCGGT | 1 cut(s) | 738 |
| AgsI | TTSAA | 7 cut(s) | 35, 254, 471, 961, 1141, 1281, 1470 |
| AhlI | ACTAGT | 2 cut(s) | 394, 1211 |
| AjnI | CCWGG | 2 cut(s) | 1267, 1381 |
| AluBI | AGCT | 8 cut(s) | 205, 215, 308, 923, 978, 1202, 1480, 1495 |
| AluI | AGCT | 8 cut(s) | 205, 215, 308, 923, 978, 1202, 1480, 1495 |
| Alw21I | GWGCWC | 3 cut(s) | 298, 1293, 1497 |
| Alw26I | GTCTC | 3 cut(s) | 213, 232, 595 |
| AlwI | GGATC | 2 cut(s) | 1259, 1272 |
| Ama87I | CYCGRG | 1 cut(s) | 1072 |
| Aor51HI | AGCGCT | 1 cut(s) | 621 |
| AoxI | GGCC | 1 cut(s) | 326 |
| ApaI | GGGCCC | 1 cut(s) | 330 |
| ApeKI | GCWGC | 6 cut(s) | 189, 692, 1002, 1092, 1199, 1310 |
| ApoI | RAATTY | 2 cut(s) | 466, 1421 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 756, 788 |
| AsiGI | ACCGGT | 1 cut(s) | 738 |
| AspLEI | GCGC | 1 cut(s) | 622 |
| AspS9I | GGNCC | 6 cut(s) | 151, 168, 326, 327, 573, 861 |
| AsuC2I | CCSGG | 1 cut(s) | 247 |
| AsuHPI | GGTGA | 4 cut(s) | 49, 472, 913, 1445 |
| AsuNHI | GCTAGC | 1 cut(s) | 1195 |
| AvaI | CYCGRG | 1 cut(s) | 1072 |
| AvaII | GGWCC | 4 cut(s) | 151, 168, 573, 861 |
| BaeGI | GKGCMC | 1 cut(s) | 330 |
| BamHI | GGATCC | 1 cut(s) | 1264 |
| BanI | GGYRCC | 1 cut(s) | 1378 |
| BanII | GRGCYC | 3 cut(s) | 330, 991, 1497 |
| Bbv12I | GWGCWC | 3 cut(s) | 298, 1293, 1497 |
| BbvI | GCAGC | 6 cut(s) | 176, 679, 1014, 1079, 1211, 1322 |
| BccI | CCATC | 6 cut(s) | 82, 373, 448, 488, 1310, 1322 |
| BceAI | ACGGC | 3 cut(s) | 405, 1098, 1105 |
| BciT130I | CCWGG | 2 cut(s) | 1269, 1383 |
| BcnI | CCSGG | 1 cut(s) | 247 |
| BcoDI | GTCTC | 3 cut(s) | 213, 232, 595 |
| BcuI | ACTAGT | 2 cut(s) | 394, 1211 |
| BfaI | CTAG | 5 cut(s) | 395, 435, 831, 1196, 1212 |
| BfmI | CTRYAG | 1 cut(s) | 1108 |
| BfoI | RGCGCY | 1 cut(s) | 623 |
| BfuAI | ACCTGC | 1 cut(s) | 634 |
| BisI | GCNGC | 6 cut(s) | 190, 693, 1003, 1093, 1200, 1311 |
| BlsI | GCNGC | 6 cut(s) | 191, 694, 1004, 1094, 1201, 1312 |
| Bme1390I | CCNGG | 3 cut(s) | 247, 1269, 1383 |
| Bme18I | GGWCC | 4 cut(s) | 151, 168, 573, 861 |
| BmeT110I | CYCGRG | 1 cut(s) | 1072 |
| BmgT120I | GGNCC | 6 cut(s) | 151, 168, 326, 327, 573, 861 |
| BmiI | GGNNCC | 4 cut(s) | 328, 660, 1266, 1380 |
| BmrFI | CCNGG | 3 cut(s) | 247, 1269, 1383 |
| BmrI | ACTGGG | 2 cut(s) | 365, 993 |
| BmsI | GCATC | 6 cut(s) | 514, 550, 630, 933, 1123, 1441 |
| BmtI | GCTAGC | 1 cut(s) | 1199 |
| BmuI | ACTGGG | 2 cut(s) | 365, 993 |
| BpmI | CTGGAG | 1 cut(s) | 644 |
| BpuEI | CTTGAG | 1 cut(s) | 195 |
| BpuMI | CCSGG | 1 cut(s) | 247 |
| BsaHI | GRCGYC | 1 cut(s) | 604 |
| BsaJI | CCNNGG | 3 cut(s) | 246, 864, 1363 |
| BsaWI | WCCGGW | 3 cut(s) | 650, 661, 738 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 49, 79 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 323 |
| Bse118I | RCCGGY | 2 cut(s) | 606, 738 |
| Bse1I | ACTGG | 2 cut(s) | 360, 988 |
| BseBI | CCWGG | 2 cut(s) | 1269, 1383 |
| BseDI | CCNNGG | 3 cut(s) | 246, 864, 1363 |
| BseGI | GGATG | 5 cut(s) | 228, 459, 529, 821, 1333 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BseMII | CTCAG | 1 cut(s) | 92 |
| BseNI | ACTGG | 2 cut(s) | 360, 988 |
| BseSI | GKGCMC | 1 cut(s) | 330 |
| BseXI | GCAGC | 6 cut(s) | 176, 679, 1014, 1079, 1211, 1322 |
| BsgI | GTGCAG | 1 cut(s) | 1137 |
| BshFI | GGCC | 1 cut(s) | 328 |
| BshNI | GGYRCC | 1 cut(s) | 1378 |
| BshTI | ACCGGT | 1 cut(s) | 738 |
| BsiHKAI | GWGCWC | 3 cut(s) | 298, 1293, 1497 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1072 |
| BsiSI | CCGG | 7 cut(s) | 246, 288, 607, 651, 662, 739, 965 |
| BslFI | GGGAC | 2 cut(s) | 400, 724 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BsmAI | GTCTC | 3 cut(s) | 213, 232, 595 |
| BsmBI | CGTCTC | 1 cut(s) | 595 |
| BsmFI | GGGAC | 2 cut(s) | 400, 724 |
| BsnI | GGCC | 1 cut(s) | 328 |
| BsoBI | CYCGRG | 1 cut(s) | 1072 |
| Bsp120I | GGGCCC | 1 cut(s) | 326 |
| Bsp1286I | GDGCHC | 5 cut(s) | 298, 330, 991, 1293, 1497 |
| Bsp143I | GATC | 3 cut(s) | 856, 1102, 1264 |
| BspACI | CCGC | 4 cut(s) | 12, 21, 576, 899 |
| BspANI | GGCC | 1 cut(s) | 328 |
| BspCNI | CTCAG | 1 cut(s) | 91 |
| BspHI | TCATGA | 1 cut(s) | 1417 |
| BspLI | GGNNCC | 4 cut(s) | 328, 660, 1266, 1380 |
| BspMI | ACCTGC | 1 cut(s) | 634 |
| BspOI | GCTAGC | 1 cut(s) | 1199 |
| BspPI | GGATC | 2 cut(s) | 1259, 1272 |
| BspT107I | GGYRCC | 1 cut(s) | 1378 |
| BsrFI | RCCGGY | 2 cut(s) | 606, 738 |
| BsrI | ACTGG | 2 cut(s) | 360, 988 |
| BssAI | RCCGGY | 2 cut(s) | 606, 738 |
| BssECI | CCNNGG | 3 cut(s) | 246, 864, 1363 |
| BssMI | GATC | 3 cut(s) | 856, 1102, 1264 |
| BssNI | GRCGYC | 1 cut(s) | 604 |
| BssT1I | CCWWGG | 1 cut(s) | 864 |
| Bst2UI | CCWGG | 2 cut(s) | 1269, 1383 |
| Bst4CI | ACNGT | 4 cut(s) | 160, 225, 971, 1409 |
| Bst6I | CTCTTC | 4 cut(s) | 178, 287, 593, 1046 |
| BstACI | GRCGYC | 1 cut(s) | 604 |
| BstC8I | GCNNGC | 5 cut(s) | 16, 618, 912, 1000, 1197 |
| BstDEI | CTNAG | 3 cut(s) | 78, 361, 1228 |
| BstF5I | GGATG | 5 cut(s) | 228, 459, 529, 821, 1333 |
| BstH2I | RGCGCY | 1 cut(s) | 623 |
| BstHHI | GCGC | 1 cut(s) | 622 |
| BstKTI | GATC | 3 cut(s) | 859, 1105, 1267 |
| BstMAI | GTCTC | 3 cut(s) | 213, 232, 595 |
| BstMBI | GATC | 3 cut(s) | 856, 1102, 1264 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 20, 689, 698, 920, 995, 1165 |
| BstNI | CCWGG | 2 cut(s) | 1269, 1383 |
| BstNSI | RCATGY | 4 cut(s) | 853, 914, 1002, 1159 |
| BstSCI | CCNGG | 3 cut(s) | 245, 1267, 1381 |
| BstSFI | CTRYAG | 1 cut(s) | 1108 |
| BstSLI | GKGCMC | 1 cut(s) | 330 |
| BstV1I | GCAGC | 6 cut(s) | 176, 679, 1014, 1079, 1211, 1322 |
| BstX2I | RGATCY | 1 cut(s) | 1264 |
| BstYI | RGATCY | 1 cut(s) | 1264 |
| BsuRI | GGCC | 1 cut(s) | 328 |
| BtsCI | GGATG | 5 cut(s) | 228, 459, 529, 821, 1333 |
| BtsIMutI | CAGTG | 2 cut(s) | 221, 981 |
| BveI | ACCTGC | 1 cut(s) | 634 |
| Cac8I | GCNNGC | 5 cut(s) | 16, 618, 912, 1000, 1197 |
| CciI | TCATGA | 1 cut(s) | 1417 |
| CfoI | GCGC | 1 cut(s) | 622 |
| Cfr10I | RCCGGY | 2 cut(s) | 606, 738 |
| Cfr13I | GGNCC | 6 cut(s) | 151, 168, 326, 327, 573, 861 |
| CseI | GACGC | 2 cut(s) | 336, 612 |
| Csp6I | GTAC | 2 cut(s) | 499, 1249 |
| CspAI | ACCGGT | 1 cut(s) | 738 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1486, 1521 |
| CviQI | GTAC | 2 cut(s) | 499, 1249 |
| DdeI | CTNAG | 3 cut(s) | 78, 361, 1228 |
| DpnI | GATC | 3 cut(s) | 858, 1104, 1266 |
| DpnII | GATC | 3 cut(s) | 856, 1102, 1264 |
| Eam1104I | CTCTTC | 4 cut(s) | 178, 287, 593, 1046 |
| EarI | CTCTTC | 4 cut(s) | 178, 287, 593, 1046 |
| Ecl136II | GAGCTC | 1 cut(s) | 1495 |
| Eco130I | CCWWGG | 1 cut(s) | 864 |
| Eco24I | GRGCYC | 3 cut(s) | 330, 991, 1497 |
| Eco47I | GGWCC | 4 cut(s) | 151, 168, 573, 861 |
| Eco47III | AGCGCT | 1 cut(s) | 621 |
| Eco53kI | GAGCTC | 1 cut(s) | 1495 |
| Eco88I | CYCGRG | 1 cut(s) | 1072 |
| EcoICRI | GAGCTC | 1 cut(s) | 1495 |
| EcoO109I | RGGNCCY | 1 cut(s) | 327 |
| EcoRI | GAATTC | 1 cut(s) | 466 |
| EcoRII | CCWGG | 2 cut(s) | 1267, 1381 |
| EcoT14I | CCWWGG | 1 cut(s) | 864 |
| EcoT38I | GRGCYC | 3 cut(s) | 330, 991, 1497 |
| ErhI | CCWWGG | 1 cut(s) | 864 |
| Esp3I | CGTCTC | 1 cut(s) | 595 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 743, 775 |
| FaqI | GGGAC | 2 cut(s) | 400, 724 |
| FauI | CCCGC | 1 cut(s) | 19 |
| Fnu4HI | GCNGC | 6 cut(s) | 190, 693, 1003, 1093, 1200, 1311 |
| FokI | GGATG | 5 cut(s) | 215, 466, 536, 828, 1340 |
| FriOI | GRGCYC | 3 cut(s) | 330, 991, 1497 |
| Fsp4HI | GCNGC | 6 cut(s) | 190, 693, 1003, 1093, 1200, 1311 |
| FspBI | CTAG | 5 cut(s) | 395, 435, 831, 1196, 1212 |
| GlaI | GCGC | 1 cut(s) | 621 |
| GluI | GCNGC | 6 cut(s) | 190, 693, 1003, 1093, 1200, 1311 |
| GsuI | CTGGAG | 1 cut(s) | 644 |
| HaeII | RGCGCY | 1 cut(s) | 623 |
| HaeIII | GGCC | 1 cut(s) | 328 |
| HapII | CCGG | 7 cut(s) | 246, 288, 607, 651, 662, 739, 965 |
| HgaI | GACGC | 2 cut(s) | 336, 612 |
| HhaI | GCGC | 1 cut(s) | 622 |
| Hin1I | GRCGYC | 1 cut(s) | 604 |
| Hin6I | GCGC | 1 cut(s) | 620 |
| HinP1I | GCGC | 1 cut(s) | 620 |
| HinfI | GANTC | 4 cut(s) | 4, 712, 1277, 1368 |
| HpaII | CCGG | 7 cut(s) | 246, 288, 607, 651, 662, 739, 965 |
| HphI | GGTGA | 4 cut(s) | 49, 472, 913, 1445 |
| Hpy166II | GTNNAC | 2 cut(s) | 84, 573 |
| Hpy188I | TCNGA | 3 cut(s) | 777, 861, 1367 |
| Hpy188III | TCNNGA | 4 cut(s) | 635, 1372, 1418, 1517 |
| Hpy8I | GTNNAC | 2 cut(s) | 84, 573 |
| HpyAV | CCTTC | 3 cut(s) | 943, 947, 1369 |
| HpyCH4III | ACNGT | 4 cut(s) | 160, 225, 971, 1409 |
| HpyCH4IV | ACGT | 1 cut(s) | 1033 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 20, 689, 698, 920, 995, 1165 |
| HpyF3I | CTNAG | 3 cut(s) | 78, 361, 1228 |
| HpySE526I | ACGT | 1 cut(s) | 1033 |
| Hsp92I | GRCGYC | 1 cut(s) | 604 |
| HspAI | GCGC | 1 cut(s) | 620 |
| Kzo9I | GATC | 3 cut(s) | 856, 1102, 1264 |
| LmnI | GCTCC | 1 cut(s) | 1296 |
| Lsp1109I | GCAGC | 6 cut(s) | 176, 679, 1014, 1079, 1211, 1322 |
| LweI | GCATC | 6 cut(s) | 514, 550, 630, 933, 1123, 1441 |
| MaeI | CTAG | 5 cut(s) | 395, 435, 831, 1196, 1212 |
| MaeII | ACGT | 1 cut(s) | 1033 |
| MaeIII | GTNAC | 3 cut(s) | 274, 670, 782 |
| MalI | GATC | 3 cut(s) | 858, 1104, 1266 |
| MboI | GATC | 3 cut(s) | 856, 1102, 1264 |
| MboII | GAAGA | 6 cut(s) | 165, 274, 475, 610, 1063, 1142 |
| MflI | RGATCY | 1 cut(s) | 1264 |
| MhlI | GDGCHC | 5 cut(s) | 298, 330, 991, 1293, 1497 |
| MluCI | AATT | 7 cut(s) | 30, 466, 678, 1077, 1282, 1421, 1499 |
| MlyI | GAGTC | 1 cut(s) | 706 |
| MmeI | TCCRAC | 1 cut(s) | 1242 |
| MseI | TTAA | 1 cut(s) | 936 |
| MslI | CAYNNNNRTG | 4 cut(s) | 233, 342, 1160, 1449 |
| MspA1I | CMGCKG | 1 cut(s) | 205 |
| MspI | CCGG | 7 cut(s) | 246, 288, 607, 651, 662, 739, 965 |
| MspR9I | CCNGG | 3 cut(s) | 247, 1269, 1383 |
| MvaI | CCWGG | 2 cut(s) | 1269, 1383 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 20, 689, 698, 920, 995, 1165 |
| NciI | CCSGG | 1 cut(s) | 247 |
| NdeII | GATC | 3 cut(s) | 856, 1102, 1264 |
| NheI | GCTAGC | 1 cut(s) | 1195 |
| NlaIV | GGNNCC | 4 cut(s) | 328, 660, 1266, 1380 |
| NmuCI | GTSAC | 1 cut(s) | 670 |
| NspI | RCATGY | 4 cut(s) | 853, 914, 1002, 1159 |
| PaeI | GCATGC | 2 cut(s) | 914, 1002 |
| PagI | TCATGA | 1 cut(s) | 1417 |
| PaqCI | CACCTGC | 1 cut(s) | 634 |
| PfeI | GAWTC | 3 cut(s) | 4, 1277, 1368 |
| PflFI | GACNNNGTC | 1 cut(s) | 971 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 323 |
| PinAI | ACCGGT | 1 cut(s) | 738 |
| PkrI | GCNGC | 6 cut(s) | 191, 694, 1004, 1094, 1201, 1312 |
| PleI | GAGTC | 1 cut(s) | 706 |
| PpsI | GAGTC | 1 cut(s) | 706 |
| PsiI | TTATAA | 1 cut(s) | 1529 |
| Psp124BI | GAGCTC | 1 cut(s) | 1497 |
| Psp6I | CCWGG | 2 cut(s) | 1267, 1381 |
| PspGI | CCWGG | 2 cut(s) | 1267, 1381 |
| PspN4I | GGNNCC | 4 cut(s) | 328, 660, 1266, 1380 |
| PspOMI | GGGCCC | 1 cut(s) | 326 |
| PspPI | GGNCC | 6 cut(s) | 151, 168, 326, 327, 573, 861 |
| PsuI | RGATCY | 1 cut(s) | 1264 |
| PsyI | GACNNNGTC | 1 cut(s) | 971 |
| PvuII | CAGCTG | 1 cut(s) | 205 |
| RsaI | GTAC | 2 cut(s) | 500, 1250 |
| RsaNI | GTAC | 2 cut(s) | 499, 1249 |
| RseI | CAYNNNNRTG | 4 cut(s) | 233, 342, 1160, 1449 |
| SacI | GAGCTC | 1 cut(s) | 1497 |
| SaqAI | TTAA | 1 cut(s) | 936 |
| SatI | GCNGC | 6 cut(s) | 190, 693, 1003, 1093, 1200, 1311 |
| Sau3AI | GATC | 3 cut(s) | 856, 1102, 1264 |
| Sau96I | GGNCC | 6 cut(s) | 151, 168, 326, 327, 573, 861 |
| SchI | GAGTC | 1 cut(s) | 706 |
| ScrFI | CCNGG | 3 cut(s) | 247, 1269, 1383 |
| SduI | GDGCHC | 5 cut(s) | 298, 330, 991, 1293, 1497 |
| SfaNI | GCATC | 6 cut(s) | 514, 550, 630, 933, 1123, 1441 |
| SfcI | CTRYAG | 1 cut(s) | 1108 |
| SinI | GGWCC | 4 cut(s) | 151, 168, 573, 861 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 233, 342, 1160, 1449 |
| SmlI | CTYRAG | 1 cut(s) | 210 |
| SmoI | CTYRAG | 1 cut(s) | 210 |
| SpeI | ACTAGT | 2 cut(s) | 394, 1211 |
| SphI | GCATGC | 2 cut(s) | 914, 1002 |
| Sse9I | AATT | 7 cut(s) | 30, 466, 678, 1077, 1282, 1421, 1499 |
| SsiI | CCGC | 4 cut(s) | 12, 21, 576, 899 |
| SspMI | CTAG | 5 cut(s) | 395, 435, 831, 1196, 1212 |
| SstI | GAGCTC | 1 cut(s) | 1497 |
| StyD4I | CCNGG | 3 cut(s) | 245, 1267, 1381 |
| StyI | CCWWGG | 1 cut(s) | 864 |
| TaaI | ACNGT | 4 cut(s) | 160, 225, 971, 1409 |
| TaiI | ACGT | 1 cut(s) | 1036 |
| TaqI | TCGA | 3 cut(s) | 881, 1020, 1257 |
| TasI | AATT | 7 cut(s) | 30, 466, 678, 1077, 1282, 1421, 1499 |
| TfiI | GAWTC | 3 cut(s) | 4, 1277, 1368 |
| Tru1I | TTAA | 1 cut(s) | 936 |
| Tru9I | TTAA | 1 cut(s) | 936 |
| TscAI | CASTG | 2 cut(s) | 228, 988 |
| TseFI | GTSAC | 1 cut(s) | 670 |
| TseI | GCWGC | 6 cut(s) | 189, 692, 1002, 1092, 1199, 1310 |
| Tsp45I | GTSAC | 1 cut(s) | 670 |
| TspRI | CASTG | 2 cut(s) | 228, 988 |
| Tth111I | GACNNNGTC | 1 cut(s) | 971 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 323 |
| VpaK11BI | GGWCC | 4 cut(s) | 151, 168, 573, 861 |
| XapI | RAATTY | 2 cut(s) | 466, 1421 |
| XceI | RCATGY | 4 cut(s) | 853, 914, 1002, 1159 |
| XspI | CTAG | 5 cut(s) | 395, 435, 831, 1196, 1212 |