Prupe.6G143700_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
11637987 .. 11640735
2749 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G143700.1

Sequence Viewer

Length: 1569 bp
ATGAGTCTTCCCGCGTACACAGCAACCCCAGTCCAACTCCTTCAGCTTCCCAAACAGCCACCACTTATTCTCCCACTTCCAAACCCATCCCACACCACCTCACCCAATCCAACCCATCCCAATAAACACTCTTTCTATCTGGAAAAAAAGACCCAAAAGCCTATAGACCCCACTGTTTCATGGACCTCCTCCATATCCCACCGCTGCCGAAATGGTCAATTGGCTGAAGCTGTTGCGCATTTCATCCGAATGAGACGAGCCGGCATCGAGCCAAACCACATCACATTCGTTACACTTTTCTCCGGCTGTGCCCATTTTCCATCGAAGGGTGTGTTGTTTGGAGCTTCGCTGCACGCTTATGCCCGGAAACTCGGCTTGGATACAAATGATGTGATGGTGGGCACGGCGGTGATTGATATGTACGCAAAGTGTGGTGGGGTGGATTTTTCTAGGCTGGTTTTTAATGGGCTGTATGTGAAGAATTCAATGTCTTGGAATACGATGATTGATGGGTATATGAAAAATGGCAAGGTTGACGATGCGGTCAAGCTGTTTGAACAAATGCCACAGAGAGATGCGGTTTCTTGGACTGTTCTGATTGGTGGCTTTGTCAAGAAAGGTCAGTTCGAGCAAGCGTTGGAGTGGTTTCGGGAGATGCAGCTCTCGGGTGTGGAACCAGACTATGTAACCTTAATTGCTGTAATTGCTGCTTGTGCTGATTTGGGAACGCTTGGATTAGGCTTGTGGATAAATCGGTTTATTATGAAGCAAGATTTTAGAGACAATATTAGGATAAGTAACTCGTTGATTGATATGTATTCTCGATGTGGTTGTATTGGTTTTGCTCGTCAAGTCTTCGAGAGCATGCCCAAAAGGACATTGGTATCATGGAACTCGATGATTGTGGGCTTTGCAGTTAATGGGCATGCAGAGGAAGCTCTCAAGTTCTTCAACCTCATGCAGAAGGAAGGGTTCAAGCCAGATGGGGTCAGCTTCACTGGAGCTCTGACTGCGTGCAGCCATGCCGGTTTAGTCAACGAGGGGCTCCATTACTTTGATAACATGATGAGAATTCATAGAATAACCCCAAGAATTGAGCATTATGGGTGTATAGTTGATCTGTATAGCCGTGCAGGGATGTTGGAAGATGCCCTGAAAGTAATCGAAAAGATGCCAATGAAGCCAAATGAAGTTGTGGTGGGTTCTTTGCTAGCTGCATGTCGAACCAATGGGAATATCAATTTAGCTGAAAGATTAATGAAGTACCTCTATGAGTTGGATCCAGGTGTGGATTCCAACTATGTGCTTTTGGCCAATATATATGCAGCGGATGGTAGGTGGGATGGTGCAAGTAGAGTTAGGAATACCATGAAAGCCCTCGGAATACAAAAGACGCCGGGGTTTAGTTCAGTTGAGATCGACTGTGACATTCATGAATTTGTGGCCGGTGATAAATCCCATGTTGACGCGGAGCATATATATTCAACCCTTGAGCTTCTCTCTTTTGAACTCAAATTATGTGGATATGTTCCAGAAAACATTGTGAGGGAATCATACGAGTTTGACTGA

Protein Analysis

523

Amino Acids

58.34

Weight (kDa)

6.76

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012282)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 542
Acc16I TGCGCA 1 cut(s) 237
AccII CGCG 2 cut(s) 14, 1469
AciI CCGC 7 cut(s) 12, 202, 407, 542, 578, 1328, 1469
AclWI GGATC 2 cut(s) 1274, 1287
AcoI YGGCCR 2 cut(s) 1311, 1443
AcsI RAATTY 3 cut(s) 481, 1071, 1436
AcuI CTGAAG 2 cut(s) 26, 246
AcyI GRCGYC 1 cut(s) 1394
AfaI GTAC 3 cut(s) 17, 422, 1265
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 6 cut(s) 486, 557, 952, 976, 1485, 1508
AjnI CCWGG 1 cut(s) 1282
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AleI CACNNNNGTG 1 cut(s) 407
Alw21I GWGCWC 1 cut(s) 1006
Alw26I GTCTC 2 cut(s) 247, 774
AlwI GGATC 2 cut(s) 1274, 1287
Ama87I CYCGRG 1 cut(s) 664
AoxI GGCC 2 cut(s) 1311, 1443
ApeKI GCWGC 7 cut(s) 204, 349, 658, 707, 1017, 1214, 1325
ApoI RAATTY 3 cut(s) 481, 1071, 1436
AseI ATTAAT 1 cut(s) 1256
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 2 cut(s) 364, 1398
AsuHPI GGTGA 3 cut(s) 93, 421, 1460
AsuNHI GCTAGC 1 cut(s) 1210
AvaI CYCGRG 1 cut(s) 664
AvaII GGWCC 1 cut(s) 183
BaeGI GKGCMC 2 cut(s) 313, 404
BaeI ACNNNNGTAYC 2 cut(s) 867, 900
BalI TGGCCA 1 cut(s) 1313
BamHI GGATCC 1 cut(s) 1279
BanII GRGCYC 2 cut(s) 1006, 1047
BbsI GAAGAC 1 cut(s) 847
Bbv12I GWGCWC 1 cut(s) 1006
BbvI GCAGC 7 cut(s) 191, 336, 670, 694, 1029, 1201, 1337
BccI CCATC 8 cut(s) 94, 123, 328, 388, 503, 977, 1325, 1337
BceAI ACGGC 2 cut(s) 420, 1113
BciT130I CCWGG 1 cut(s) 1284
BciVI GTATCC 1 cut(s) 373
BcnI CCSGG 2 cut(s) 364, 1398
BcoDI GTCTC 2 cut(s) 247, 774
BfaI CTAG 2 cut(s) 450, 1211
BfmI CTRYAG 1 cut(s) 162
BfuI GTATCC 1 cut(s) 373
BisI GCNGC 7 cut(s) 205, 350, 659, 708, 1018, 1215, 1326
BlsI GCNGC 7 cut(s) 206, 351, 660, 709, 1019, 1216, 1327
Bme1390I CCNGG 3 cut(s) 364, 1284, 1398
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 664
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 3 cut(s) 675, 1046, 1281
BmrFI CCNGG 3 cut(s) 364, 1284, 1398
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 6 cut(s) 273, 529, 565, 645, 1138, 1161
BmtI GCTAGC 1 cut(s) 1214
BmuI ACTGGG 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 847
BplI GAGNNNNNCTC 2 cut(s) 1484, 1516
BpmI CTGGAG 1 cut(s) 1020
BpuEI CTTGAG 2 cut(s) 926, 1511
BpuMI CCSGG 2 cut(s) 364, 1398
BsaHI GRCGYC 1 cut(s) 1394
BsaJI CCNNGG 2 cut(s) 1378, 1397
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse118I RCCGGY 3 cut(s) 260, 1025, 1445
Bse1I ACTGG 2 cut(s) 29, 1003
BseBI CCWGG 1 cut(s) 1284
BseDI CCNNGG 2 cut(s) 1378, 1397
BseGI GGATG 6 cut(s) 86, 115, 243, 1143, 1336, 1348
BseLI CCNNNNNNNGG 1 cut(s) 326
BseNI ACTGG 2 cut(s) 29, 1003
BseRI GAGGAG 1 cut(s) 178
BseSI GKGCMC 2 cut(s) 313, 404
BseXI GCAGC 7 cut(s) 191, 336, 670, 694, 1029, 1201, 1337
BsgI GTGCAG 3 cut(s) 335, 1036, 1152
Bsh1236I CGCG 2 cut(s) 14, 1469
BshFI GGCC 2 cut(s) 1313, 1445
BsiHKAI GWGCWC 1 cut(s) 1006
BsiHKCI CYCGRG 1 cut(s) 664
BsiSI CCGG 6 cut(s) 261, 303, 364, 1026, 1397, 1446
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 2 cut(s) 247, 774
BsmBI CGTCTC 1 cut(s) 247
BsnI GGCC 2 cut(s) 1313, 1445
BsoBI CYCGRG 1 cut(s) 664
Bsp1286I GDGCHC 4 cut(s) 313, 404, 1006, 1047
Bsp143I GATC 3 cut(s) 1117, 1279, 1416
BspACI CCGC 7 cut(s) 12, 202, 407, 542, 578, 1328, 1469
BspANI GGCC 2 cut(s) 1313, 1445
BspFNI CGCG 2 cut(s) 14, 1469
BspHI TCATGA 1 cut(s) 1432
BspLI GGNNCC 3 cut(s) 675, 1046, 1281
BspOI GCTAGC 1 cut(s) 1214
BspPI GGATC 2 cut(s) 1274, 1287
BsrFI RCCGGY 3 cut(s) 260, 1025, 1445
BsrI ACTGG 2 cut(s) 29, 1003
BssAI RCCGGY 3 cut(s) 260, 1025, 1445
BssECI CCNNGG 2 cut(s) 1378, 1397
BssMI GATC 3 cut(s) 1117, 1279, 1416
BssNI GRCGYC 1 cut(s) 1394
Bst2UI CCWGG 1 cut(s) 1284
Bst4CI ACNGT 3 cut(s) 175, 592, 1424
BstACI GRCGYC 1 cut(s) 1394
BstC8I GCNNGC 7 cut(s) 262, 354, 633, 866, 927, 1015, 1212
BstF5I GGATG 6 cut(s) 86, 115, 243, 1143, 1336, 1348
BstFNI CGCG 2 cut(s) 14, 1469
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 3 cut(s) 1120, 1282, 1419
BstMAI GTCTC 2 cut(s) 247, 774
BstMBI GATC 3 cut(s) 1117, 1279, 1416
BstMWI GCNNNNNNNGC 6 cut(s) 20, 704, 713, 935, 1010, 1180
BstNI CCWGG 1 cut(s) 1284
BstNSI RCATGY 3 cut(s) 868, 929, 1221
BstSCI CCNGG 3 cut(s) 362, 1282, 1396
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 2 cut(s) 313, 404
BstUI CGCG 2 cut(s) 14, 1469
BstV1I GCAGC 7 cut(s) 191, 336, 670, 694, 1029, 1201, 1337
BstV2I GAAGAC 1 cut(s) 847
BstX2I RGATCY 1 cut(s) 1279
BstYI RGATCY 1 cut(s) 1279
BsuI GTATCC 1 cut(s) 373
BsuRI GGCC 2 cut(s) 1313, 1445
BtsCI GGATG 6 cut(s) 86, 115, 243, 1143, 1336, 1348
BtsIMutI CAGTG 2 cut(s) 171, 996
Cac8I GCNNGC 7 cut(s) 262, 354, 633, 866, 927, 1015, 1212
CciI TCATGA 1 cut(s) 1432
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 3 cut(s) 260, 1025, 1445
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 2 cut(s) 1402, 1475
Csp6I GTAC 3 cut(s) 16, 421, 1264
CspCI CAANNNNNGTGG 2 cut(s) 1501, 1536
CviQI GTAC 3 cut(s) 16, 421, 1264
DpnI GATC 3 cut(s) 1119, 1281, 1418
DpnII GATC 3 cut(s) 1117, 1279, 1416
DrdI GACNNNNNNGTC 1 cut(s) 542
DseDI GACNNNNNNGTC 1 cut(s) 542
EaeI YGGCCR 2 cut(s) 1311, 1443
Ecl136II GAGCTC 1 cut(s) 1004
Eco24I GRGCYC 2 cut(s) 1006, 1047
Eco47I GGWCC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 1004
Eco57I CTGAAG 2 cut(s) 26, 246
Eco88I CYCGRG 1 cut(s) 664
EcoICRI GAGCTC 1 cut(s) 1004
EcoRI GAATTC 2 cut(s) 481, 1071
EcoRII CCWGG 1 cut(s) 1282
EcoT38I GRGCYC 2 cut(s) 1006, 1047
Esp3I CGTCTC 1 cut(s) 247
FauI CCCGC 1 cut(s) 19
Fnu4HI GCNGC 7 cut(s) 205, 350, 659, 708, 1018, 1215, 1326
FokI GGATG 6 cut(s) 73, 102, 230, 1150, 1343, 1355
FriOI GRGCYC 2 cut(s) 1006, 1047
Fsp4HI GCNGC 7 cut(s) 205, 350, 659, 708, 1018, 1215, 1326
FspBI CTAG 2 cut(s) 450, 1211
FspI TGCGCA 1 cut(s) 237
GlaI GCGC 1 cut(s) 237
GluI GCNGC 7 cut(s) 205, 350, 659, 708, 1018, 1215, 1326
GsuI CTGGAG 1 cut(s) 1020
HaeIII GGCC 2 cut(s) 1313, 1445
HapII CCGG 6 cut(s) 261, 303, 364, 1026, 1397, 1446
HgaI GACGC 2 cut(s) 1402, 1475
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 1394
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 3 cut(s) 535, 1036, 1465
HindII GTYRAC 3 cut(s) 535, 1036, 1465
HinfI GANTC 3 cut(s) 4, 1292, 1550
HpaII CCGG 6 cut(s) 261, 303, 364, 1026, 1397, 1446
HphI GGTGA 3 cut(s) 93, 421, 1460
Hpy166II GTNNAC 4 cut(s) 18, 535, 1036, 1465
Hpy188I TCNGA 4 cut(s) 248, 597, 1008, 1382
Hpy188III TCNNGA 7 cut(s) 140, 613, 650, 822, 859, 1433, 1532
Hpy8I GTNNAC 4 cut(s) 18, 535, 1036, 1465
HpyAV CCTTC 4 cut(s) 50, 319, 958, 962
HpyCH4III ACNGT 3 cut(s) 175, 592, 1424
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 704, 713, 935, 1010, 1180
Hsp92I GRCGYC 1 cut(s) 1394
HspAI GCGC 1 cut(s) 236
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Kzo9I GATC 3 cut(s) 1117, 1279, 1416
LmnI GCTCC 4 cut(s) 341, 1001, 1050, 1471
Lsp1109I GCAGC 7 cut(s) 191, 336, 670, 694, 1029, 1201, 1337
LweI GCATC 6 cut(s) 273, 529, 565, 645, 1138, 1161
MaeI CTAG 2 cut(s) 450, 1211
MaeIII GTNAC 4 cut(s) 289, 685, 797, 1424
MalI GATC 3 cut(s) 1119, 1281, 1418
MboI GATC 3 cut(s) 1117, 1279, 1416
MboII GAAGA 4 cut(s) 490, 847, 940, 1157
MfeI CAATTG 1 cut(s) 218
MflI RGATCY 1 cut(s) 1279
MhlI GDGCHC 4 cut(s) 313, 404, 1006, 1047
MlsI TGGCCA 1 cut(s) 1313
MluCI AATT 9 cut(s) 218, 481, 693, 702, 1071, 1092, 1240, 1436, 1514
MluNI TGGCCA 1 cut(s) 1313
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 6 cut(s) 58, 134, 618, 1122, 1257, 1320
MnlI CCTC 9 cut(s) 109, 196, 199, 925, 965, 1033, 1277, 1388, 1539
Mox20I TGGCCA 1 cut(s) 1313
MroNI GCCGGC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 1313
MseI TTAA 4 cut(s) 462, 692, 918, 1256
MslI CAYNNNNRTG 3 cut(s) 248, 357, 407
Msp20I TGGCCA 1 cut(s) 1313
MspA1I CMGCKG 2 cut(s) 204, 1328
MspI CCGG 6 cut(s) 261, 303, 364, 1026, 1397, 1446
MspR9I CCNGG 3 cut(s) 364, 1284, 1398
MunI CAATTG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 1284
MvnI CGCG 2 cut(s) 14, 1469
MwoI GCNNNNNNNGC 6 cut(s) 20, 704, 713, 935, 1010, 1180
NaeI GCCGGC 1 cut(s) 262
NciI CCSGG 2 cut(s) 364, 1398
NdeII GATC 3 cut(s) 1117, 1279, 1416
NgoMIV GCCGGC 1 cut(s) 260
NheI GCTAGC 1 cut(s) 1210
NlaIV GGNNCC 3 cut(s) 675, 1046, 1281
NmeAIII GCCGAG 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 1424
NsbI TGCGCA 1 cut(s) 237
NspI RCATGY 3 cut(s) 868, 929, 1221
OliI CACNNNNGTG 1 cut(s) 407
PaeI GCATGC 2 cut(s) 868, 929
PagI TCATGA 1 cut(s) 1432
PdiI GCCGGC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 1292, 1550
PkrI GCNGC 7 cut(s) 206, 351, 660, 709, 1019, 1216, 1327
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 1256
Psp124BI GAGCTC 1 cut(s) 1006
Psp6I CCWGG 1 cut(s) 1282
PspGI CCWGG 1 cut(s) 1282
PspN4I GGNNCC 3 cut(s) 675, 1046, 1281
PspPI GGNCC 1 cut(s) 183
PsuI RGATCY 1 cut(s) 1279
RsaI GTAC 3 cut(s) 17, 422, 1265
RsaNI GTAC 3 cut(s) 16, 421, 1264
RseI CAYNNNNRTG 3 cut(s) 248, 357, 407
SacI GAGCTC 1 cut(s) 1006
SaqAI TTAA 4 cut(s) 462, 692, 918, 1256
SatI GCNGC 7 cut(s) 205, 350, 659, 708, 1018, 1215, 1326
Sau3AI GATC 3 cut(s) 1117, 1279, 1416
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 364, 1284, 1398
SduI GDGCHC 4 cut(s) 313, 404, 1006, 1047
SfaNI GCATC 6 cut(s) 273, 529, 565, 645, 1138, 1161
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 3 cut(s) 248, 357, 407
SmlI CTYRAG 2 cut(s) 941, 1490
SmoI CTYRAG 2 cut(s) 941, 1490
SphI GCATGC 2 cut(s) 868, 929
Sse9I AATT 9 cut(s) 218, 481, 693, 702, 1071, 1092, 1240, 1436, 1514
SsiI CCGC 7 cut(s) 12, 202, 407, 542, 578, 1328, 1469
SspI AATATT 1 cut(s) 787
SspMI CTAG 2 cut(s) 450, 1211
SstI GAGCTC 1 cut(s) 1006
StyD4I CCNGG 3 cut(s) 362, 1282, 1396
TaaI ACNGT 3 cut(s) 175, 592, 1424
TaqI TCGA 9 cut(s) 267, 323, 627, 823, 858, 896, 1164, 1222, 1419
TasI AATT 9 cut(s) 218, 481, 693, 702, 1071, 1092, 1240, 1436, 1514
TfiI GAWTC 2 cut(s) 1292, 1550
Tru1I TTAA 4 cut(s) 462, 692, 918, 1256
Tru9I TTAA 4 cut(s) 462, 692, 918, 1256
TscAI CASTG 2 cut(s) 178, 1003
TseFI GTSAC 1 cut(s) 1424
TseI GCWGC 7 cut(s) 204, 349, 658, 707, 1017, 1214, 1325
Tsp45I GTSAC 1 cut(s) 1424
TspRI CASTG 2 cut(s) 178, 1003
VpaK11BI GGWCC 1 cut(s) 183
VspI ATTAAT 1 cut(s) 1256
XapI RAATTY 3 cut(s) 481, 1071, 1436
XceI RCATGY 3 cut(s) 868, 929, 1221
XcmI CCANNNNNNNNNTGG 1 cut(s) 877
XspI CTAG 2 cut(s) 450, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.