Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0012282

Physical Location & Seq

Genomic Coordinates Reverse (-)

10171339 .. 10171809

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g10830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAGCTCGCAGGAGTGGAACCAGATTATGTGACTAGAATTGCTGTAATCGCGGCGTGTGCAGATTTGGGAACACTTGGTCTAGGCTTGTGGATAAATCGTTTTGTTATGAAGCAAGACTTTAAAGACAACGTTAGGATAAGTAACTCGTTGGTTGATATGTATTCTCGATGTGGTTGTACTAGTTTTGCTCATCAAGTATTCGAGAGCATGCCCAAAAGGACATTGGTATCTTGGAACTCAATGATTGTGGGCTTTGCTGTCAATGGGCATGCAGAGGAAGCTCTCGACTTCTTCAACCTGATGCAGAAGGAAGGCTTCAAGCCAGACGGGGTCAGCTTCACTGGAGCACTCACCGCGTGCAGCCATGCTGGTTTAGTTGATGAGGGGCTCCATTACTTTGATAACATGAAGAGAGTTCACAGAATAACACCCAGAATCGAGCATTATGTGCATAGTCGATCTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

157

Amino Acids

17.47

Weight (kDa)

6.64

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 122	1.6e-11	PPR repeat family
PPR	PF01535	77 - 107	8.4e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05750 AT1G05750
fragaria_vesca	FvH4_3g26660
malus_domestica	MD00G1049500.v1.1 MD00G1071600.v1.1 MD03G1154500.v1.1
prunus_persica	Prupe.6G143700_v2.0.a1
pyrus_communis	pycom03g10830 pycom11g14680
rosa_chinensis	RchiOBHm_Chr5g0048131 RchiOBHm_Chr5g0048161
rosa_laevigata	RLG00000034500
rosa_multiflora	Rmu_sc0001408.1_g000020
rosa_roxburghii	Rroxscaffold_1G00033760
rosa_rugosa	Rorug05G0236900
rosa_samantha	Rh5AG316000 Rh5BG326400 Rh5CG352900
rosa_wichuraiana	Rw5G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	53, 359
AciI	CCGC	2 cut(s)	53, 357
AclI	AACGTT	1 cut(s)	132
AdeI	CACNNNGTG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	298, 322
AhlI	ACTAGT	1 cut(s)	182
AluBI	AGCT	3 cut(s)	7, 284, 339
AluI	AGCT	3 cut(s)	7, 284, 339
Alw21I	GWGCWC	1 cut(s)	352
ApeKI	GCWGC	2 cut(s)	4, 363
AsuHPI	GGTGA	1 cut(s)	346
BaeI	ACNNNNGTAYC	2 cut(s)	213, 246
BanII	GRGCYC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	16, 375
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	3 cut(s)	36, 83, 183
BfmI	CTRYAG	1 cut(s)	467
BisI	GCNGC	3 cut(s)	5, 54, 364
BlsI	GCNGC	3 cut(s)	6, 55, 365
BmiI	GGNNCC	2 cut(s)	21, 392
BmsI	GCATC	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	366
Bse1I	ACTGG	1 cut(s)	349
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	2 cut(s)	16, 375
BsgI	GTGCAG	2 cut(s)	81, 382
Bsh1236I	CGCG	2 cut(s)	53, 359
BsiHKAI	GWGCWC	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	352, 393
Bsp143I	GATC	1 cut(s)	461
BspACI	CCGC	2 cut(s)	53, 357
BspFNI	CGCG	2 cut(s)	53, 359
BspLI	GGNNCC	2 cut(s)	21, 392
BsrI	ACTGG	1 cut(s)	349
BssMI	GATC	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstC8I	GCNNGC	4 cut(s)	9, 212, 273, 361
BstFNI	CGCG	2 cut(s)	53, 359
BstKTI	GATC	1 cut(s)	464
BstMBI	GATC	1 cut(s)	461
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 59, 281, 356, 451
BstNSI	RCATGY	2 cut(s)	214, 275
BstSFI	CTRYAG	1 cut(s)	467
BstUI	CGCG	2 cut(s)	53, 359
BstV1I	GCAGC	2 cut(s)	16, 375
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	4 cut(s)	9, 212, 273, 361
Csp6I	GTAC	1 cut(s)	180
CspCI	CAANNNNNGTGG	2 cut(s)	231, 266
CviAII	CATG	4 cut(s)	211, 272, 368, 409
CviJI	RGCY	9 cut(s)	7, 87, 255, 284, 318, 325, 339, 366, 391
CviKI_1	RGCY	9 cut(s)	7, 87, 255, 284, 318, 325, 339, 366, 391
CviQI	GTAC	1 cut(s)	180
DpnI	GATC	1 cut(s)	463
DpnII	GATC	1 cut(s)	461
DraI	TTTAAA	1 cut(s)	124
DraIII	CACNNNGTG	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	4 cut(s)	214, 275, 371, 412
FalI	AAGNNNNNCTT	4 cut(s)	104, 136, 302, 334
FatI	CATG	4 cut(s)	210, 271, 367, 408
Fnu4HI	GCNGC	3 cut(s)	5, 54, 364
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	3 cut(s)	5, 54, 364
FspBI	CTAG	3 cut(s)	36, 83, 183
GluI	GCNGC	3 cut(s)	5, 54, 364
GsuI	CTGGAG	1 cut(s)	366
Hin1II	CATG	4 cut(s)	214, 275, 371, 412
HinfI	GANTC	1 cut(s)	438
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188III	TCNNGA	3 cut(s)	168, 205, 287
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	2 cut(s)	304, 308
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	6 cut(s)	4, 62, 275, 307, 363, 454
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 59, 281, 356, 451
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	214, 275, 371, 412
Kzo9I	GATC	1 cut(s)	461
LmnI	GCTCC	2 cut(s)	347, 396
LpnPI	CCDG	6 cut(s)	36, 314, 330, 339, 357, 448
Lsp1109I	GCAGC	2 cut(s)	16, 375
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	3 cut(s)	36, 83, 183
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	31, 143
MalI	GATC	1 cut(s)	463
MboI	GATC	1 cut(s)	461
MboII	GAAGA	2 cut(s)	286, 424
MhlI	GDGCHC	2 cut(s)	352, 393
MluCI	AATT	1 cut(s)	39
MnlI	CCTC	2 cut(s)	271, 379
MseI	TTAA	1 cut(s)	123
MvnI	CGCG	2 cut(s)	53, 359
MwoI	GCNNNNNNNGC	5 cut(s)	50, 59, 281, 356, 451
NdeII	GATC	1 cut(s)	461
NlaIII	CATG	4 cut(s)	214, 275, 371, 412
NlaIV	GGNNCC	2 cut(s)	21, 392
NmuCI	GTSAC	1 cut(s)	31
NspI	RCATGY	2 cut(s)	214, 275
PaeI	GCATGC	2 cut(s)	214, 275
PfeI	GAWTC	1 cut(s)	438
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	6, 55, 365
Psp1406I	AACGTT	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	21, 392
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	3 cut(s)	5, 54, 364
Sau3AI	GATC	1 cut(s)	461
SduI	GDGCHC	2 cut(s)	352, 393
SetI	ASST	5 cut(s)	9, 135, 286, 303, 341
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	467
SpeI	ACTAGT	1 cut(s)	182
SphI	GCATGC	2 cut(s)	214, 275
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	2 cut(s)	53, 357
SspMI	CTAG	3 cut(s)	36, 83, 183
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	5 cut(s)	169, 204, 288, 441, 460
TasI	AATT	1 cut(s)	39
TatI	WGTACW	1 cut(s)	179
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	2 cut(s)	4, 363
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	125, 425
TspRI	CASTG	1 cut(s)	349
Tth111I	GACNNNGTC	1 cut(s)	332
XceI	RCATGY	2 cut(s)	214, 275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XspI	CTAG	3 cut(s)	36, 83, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.