Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G05750 AT1G05750 |
| fragaria_vesca | FvH4_3g26660 |
| malus_domestica | MD00G1049500.v1.1 MD00G1071600.v1.1 MD03G1154500.v1.1 |
| prunus_persica | Prupe.6G143700_v2.0.a1 |
| pyrus_communis | pycom03g10830 pycom11g14680 |
| rosa_chinensis | RchiOBHm_Chr5g0048131 RchiOBHm_Chr5g0048161 |
| rosa_laevigata | RLG00000034500 |
| rosa_multiflora | Rmu_sc0001408.1_g000020 |
| rosa_roxburghii | Rroxscaffold_1G00033760 |
| rosa_rugosa | Rorug05G0236900 |
| rosa_samantha | Rh5AG316000 Rh5BG326400 Rh5CG352900 |
| rosa_wichuraiana | Rw5G029620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 351 |
| AciI | CCGC | 4 cut(s) | 167, 293, 346, 349 |
| AcuI | CTGAAG | 1 cut(s) | 300 |
| AflIII | ACRYGT | 1 cut(s) | 420 |
| AgsI | TTSAA | 2 cut(s) | 205, 229 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 382 |
| AjnI | CCWGG | 1 cut(s) | 310 |
| AluBI | AGCT | 2 cut(s) | 191, 246 |
| AluI | AGCT | 2 cut(s) | 191, 246 |
| AoxI | GGCC | 1 cut(s) | 393 |
| ApeKI | GCWGC | 2 cut(s) | 53, 270 |
| AspS9I | GGNCC | 1 cut(s) | 129 |
| AvaII | GGWCC | 1 cut(s) | 129 |
| BanII | GRGCYC | 1 cut(s) | 259 |
| BbsI | GAAGAC | 1 cut(s) | 357 |
| BbvI | GCAGC | 2 cut(s) | 40, 282 |
| BciT130I | CCWGG | 1 cut(s) | 312 |
| BglII | AGATCT | 1 cut(s) | 333 |
| BisI | GCNGC | 4 cut(s) | 54, 168, 271, 349 |
| BlsI | GCNGC | 4 cut(s) | 55, 169, 272, 350 |
| Bme1390I | CCNGG | 1 cut(s) | 312 |
| Bme18I | GGWCC | 1 cut(s) | 129 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 382 |
| BmgT120I | GGNCC | 1 cut(s) | 129 |
| BmiI | GGNNCC | 2 cut(s) | 21, 297 |
| BmrFI | CCNGG | 1 cut(s) | 312 |
| BmrI | ACTGGG | 1 cut(s) | 261 |
| BmsI | GCATC | 2 cut(s) | 201, 326 |
| BmuI | ACTGGG | 1 cut(s) | 261 |
| BpiI | GAAGAC | 1 cut(s) | 357 |
| BsaJI | CCNNGG | 3 cut(s) | 132, 288, 311 |
| BsaWI | WCCGGW | 1 cut(s) | 22 |
| Bse118I | RCCGGY | 1 cut(s) | 99 |
| Bse1I | ACTGG | 1 cut(s) | 256 |
| BseBI | CCWGG | 1 cut(s) | 312 |
| BseDI | CCNNGG | 3 cut(s) | 132, 288, 311 |
| BseNI | ACTGG | 1 cut(s) | 256 |
| BseXI | GCAGC | 2 cut(s) | 40, 282 |
| BshFI | GGCC | 1 cut(s) | 395 |
| BsiSI | CCGG | 3 cut(s) | 23, 100, 233 |
| BslFI | GGGAC | 1 cut(s) | 85 |
| BsmFI | GGGAC | 1 cut(s) | 85 |
| BsnI | GGCC | 1 cut(s) | 395 |
| Bsp1286I | GDGCHC | 1 cut(s) | 259 |
| Bsp143I | GATC | 2 cut(s) | 124, 333 |
| Bsp19I | CCATGG | 1 cut(s) | 288 |
| BspACI | CCGC | 4 cut(s) | 167, 293, 346, 349 |
| BspANI | GGCC | 1 cut(s) | 395 |
| BspLI | GGNNCC | 2 cut(s) | 21, 297 |
| BsrBI | CCGCTC | 1 cut(s) | 351 |
| BsrFI | RCCGGY | 1 cut(s) | 99 |
| BsrI | ACTGG | 1 cut(s) | 256 |
| BssAI | RCCGGY | 1 cut(s) | 99 |
| BssECI | CCNNGG | 3 cut(s) | 132, 288, 311 |
| BssMI | GATC | 2 cut(s) | 124, 333 |
| BssT1I | CCWWGG | 2 cut(s) | 132, 288 |
| Bst2UI | CCWGG | 1 cut(s) | 312 |
| Bst4CI | ACNGT | 1 cut(s) | 239 |
| Bst6I | CTCTTC | 1 cut(s) | 297 |
| BstC8I | GCNNGC | 2 cut(s) | 180, 268 |
| BstDSI | CCRYGG | 1 cut(s) | 288 |
| BstKTI | GATC | 2 cut(s) | 127, 336 |
| BstMBI | GATC | 2 cut(s) | 124, 333 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 50, 59, 188, 263, 284 |
| BstNI | CCWGG | 1 cut(s) | 312 |
| BstNSI | RCATGY | 4 cut(s) | 121, 182, 270, 424 |
| BstSCI | CCNGG | 1 cut(s) | 310 |
| BstV1I | GCAGC | 2 cut(s) | 40, 282 |
| BstV2I | GAAGAC | 1 cut(s) | 357 |
| BstX2I | RGATCY | 1 cut(s) | 333 |
| BstYI | RGATCY | 1 cut(s) | 333 |
| BsuRI | GGCC | 1 cut(s) | 395 |
| BtgI | CCRYGG | 1 cut(s) | 288 |
| BtsIMutI | CAGTG | 1 cut(s) | 249 |
| Cac8I | GCNNGC | 2 cut(s) | 180, 268 |
| Cfr10I | RCCGGY | 1 cut(s) | 99 |
| Cfr13I | GGNCC | 1 cut(s) | 129 |
| CviAII | CATG | 7 cut(s) | 118, 141, 179, 267, 275, 289, 421 |
| DpnI | GATC | 2 cut(s) | 126, 335 |
| DpnII | GATC | 2 cut(s) | 124, 333 |
| DriI | GACNNNNNGTC | 1 cut(s) | 382 |
| Eam1104I | CTCTTC | 1 cut(s) | 297 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 382 |
| EarI | CTCTTC | 1 cut(s) | 297 |
| EciI | GGCGGA | 1 cut(s) | 308 |
| Eco130I | CCWWGG | 2 cut(s) | 132, 288 |
| Eco24I | GRGCYC | 1 cut(s) | 259 |
| Eco47I | GGWCC | 1 cut(s) | 129 |
| Eco57I | CTGAAG | 1 cut(s) | 300 |
| EcoRII | CCWGG | 1 cut(s) | 310 |
| EcoT14I | CCWWGG | 2 cut(s) | 132, 288 |
| EcoT38I | GRGCYC | 1 cut(s) | 259 |
| ErhI | CCWWGG | 2 cut(s) | 132, 288 |
| FaeI | CATG | 7 cut(s) | 121, 144, 182, 270, 278, 292, 424 |
| FaqI | GGGAC | 1 cut(s) | 85 |
| FatI | CATG | 7 cut(s) | 117, 140, 178, 266, 274, 288, 420 |
| Fnu4HI | GCNGC | 4 cut(s) | 54, 168, 271, 349 |
| FriOI | GRGCYC | 1 cut(s) | 259 |
| Fsp4HI | GCNGC | 4 cut(s) | 54, 168, 271, 349 |
| GluI | GCNGC | 4 cut(s) | 54, 168, 271, 349 |
| HaeIII | GGCC | 1 cut(s) | 395 |
| HapII | CCGG | 3 cut(s) | 23, 100, 233 |
| Hin1II | CATG | 7 cut(s) | 121, 144, 182, 270, 278, 292, 424 |
| HinfI | GANTC | 1 cut(s) | 73 |
| HpaII | CCGG | 3 cut(s) | 23, 100, 233 |
| Hpy188I | TCNGA | 1 cut(s) | 129 |
| Hpy99I | CGWCG | 4 cut(s) | 358, 361, 364, 388 |
| HpyAV | CCTTC | 2 cut(s) | 211, 385 |
| HpyCH4III | ACNGT | 1 cut(s) | 239 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 182, 214, 266, 270 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 50, 59, 188, 263, 284 |
| Hsp92II | CATG | 7 cut(s) | 121, 144, 182, 270, 278, 292, 424 |
| Kzo9I | GATC | 2 cut(s) | 124, 333 |
| LmnI | GCTCC | 1 cut(s) | 295 |
| LpnPI | CCDG | 9 cut(s) | 36, 113, 135, 221, 237, 246, 297, 312, 324 |
| Lsp1109I | GCAGC | 2 cut(s) | 40, 282 |
| LweI | GCATC | 2 cut(s) | 201, 326 |
| MaeIII | GTNAC | 1 cut(s) | 31 |
| MalI | GATC | 2 cut(s) | 126, 335 |
| MbiI | CCGCTC | 1 cut(s) | 351 |
| MboI | GATC | 2 cut(s) | 124, 333 |
| MboII | GAAGA | 6 cut(s) | 193, 293, 314, 343, 357, 400 |
| MflI | RGATCY | 1 cut(s) | 333 |
| MhlI | GDGCHC | 1 cut(s) | 259 |
| MluCI | AATT | 1 cut(s) | 39 |
| MlyI | GAGTC | 1 cut(s) | 67 |
| MnlI | CCTC | 2 cut(s) | 178, 214 |
| MspI | CCGG | 3 cut(s) | 23, 100, 233 |
| MspR9I | CCNGG | 1 cut(s) | 312 |
| MvaI | CCWGG | 1 cut(s) | 312 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 50, 59, 188, 263, 284 |
| NcoI | CCATGG | 1 cut(s) | 288 |
| NdeII | GATC | 2 cut(s) | 124, 333 |
| NlaIII | CATG | 7 cut(s) | 121, 144, 182, 270, 278, 292, 424 |
| NlaIV | GGNNCC | 2 cut(s) | 21, 297 |
| NmuCI | GTSAC | 1 cut(s) | 31 |
| NspI | RCATGY | 4 cut(s) | 121, 182, 270, 424 |
| PaeI | GCATGC | 2 cut(s) | 182, 270 |
| PciI | ACATGT | 1 cut(s) | 420 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 359 |
| PflFI | GACNNNGTC | 1 cut(s) | 239 |
| PkrI | GCNGC | 4 cut(s) | 55, 169, 272, 350 |
| PleI | GAGTC | 1 cut(s) | 67 |
| PpsI | GAGTC | 1 cut(s) | 67 |
| PscI | ACATGT | 1 cut(s) | 420 |
| Psp6I | CCWGG | 1 cut(s) | 310 |
| PspGI | CCWGG | 1 cut(s) | 310 |
| PspN4I | GGNNCC | 2 cut(s) | 21, 297 |
| PspPI | GGNCC | 1 cut(s) | 129 |
| PsuI | RGATCY | 1 cut(s) | 333 |
| PsyI | GACNNNGTC | 1 cut(s) | 239 |
| SatI | GCNGC | 4 cut(s) | 54, 168, 271, 349 |
| Sau3AI | GATC | 2 cut(s) | 124, 333 |
| Sau96I | GGNCC | 1 cut(s) | 129 |
| SchI | GAGTC | 1 cut(s) | 67 |
| ScrFI | CCNGG | 1 cut(s) | 312 |
| SduI | GDGCHC | 1 cut(s) | 259 |
| SetI | ASST | 5 cut(s) | 9, 134, 193, 210, 248 |
| SfaNI | GCATC | 2 cut(s) | 201, 326 |
| SinI | GGWCC | 1 cut(s) | 129 |
| SphI | GCATGC | 2 cut(s) | 182, 270 |
| Sse9I | AATT | 1 cut(s) | 39 |
| SsiI | CCGC | 4 cut(s) | 167, 293, 346, 349 |
| StyD4I | CCNGG | 1 cut(s) | 310 |
| StyI | CCWWGG | 2 cut(s) | 132, 288 |
| TaaI | ACNGT | 1 cut(s) | 239 |
| TaqI | TCGA | 1 cut(s) | 386 |
| TasI | AATT | 1 cut(s) | 39 |
| TauI | GCSGC | 2 cut(s) | 170, 351 |
| TscAI | CASTG | 1 cut(s) | 256 |
| TseFI | GTSAC | 1 cut(s) | 31 |
| TseI | GCWGC | 2 cut(s) | 53, 270 |
| Tsp45I | GTSAC | 1 cut(s) | 31 |
| TspDTI | ATGAA | 1 cut(s) | 129 |
| TspRI | CASTG | 1 cut(s) | 256 |
| Tth111I | GACNNNGTC | 1 cut(s) | 239 |
| VpaK11BI | GGWCC | 1 cut(s) | 129 |
| XceI | RCATGY | 4 cut(s) | 121, 182, 270, 424 |