Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004797

Physical Location & Seq

Genomic Coordinates Reverse (-)

36194703 .. 36197962

Gene Structure 3260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1162000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAACCTGCGTAGAATTTCGTCGAGAATGGCCGACGAAATCAGCAGGTCCGGCGACCTAGGAACCTCCCCTGCCACCGACTCCTTATGTTCAAGAACGGTGAATATAGGCACTGGACCGCCGGGCTCCAAAGTCAGGTGGTTTCGATCCGAAAGCAATGAAGAAAGGCAAATCAACACGGTTACATTTGACAGCAAAGAGAATTCTCCTACGATTGTTATGATTCACGGATACGGTGCTTCTCAAGGTTTCTTCTTTAGAAATTTCGATGCCCTTGCCAGTCGGTTTAGGGTCATTGCCATTGATCAAATAGGTTGGGGCGGATCAAGCAGGCCTGATTTTACATGCAAAAGCACTGAAGAAACTGAGGCATGGTTCATTGATTCCTTTGAGGAATGGCGAAAAGCCAAAAACCTCAGCAACTTTATATTACTTGGGCATTCATTTGGTGGGTATGTTGCATCGAAGTACGCTCTGAAGCACGTTAAGCATTTGATTTTAGTGGGATCTGCTGGGTTTTCATCGGAGACGGATACATCGTACGAGAGGCTTAACCAATTCAAAGCAACAGGGCTAGGGCCTTTGGGTCCAAATCTTGTTCGAAGTTACACAACTGCGAGGTTTGGTTCTTATTCAACAGGGACCACGCTAACTGGAGAGGAATCCGGACTTCTAACAGATTATGTGTACCATACTTTAGCAGCCAAAGCTAGCGGGGAGCTGTGCTTAAAGTATATATTTTCTTTCGGTGCGTTTGCTAGGAGTCCCCTTATACACAGTGCATCAGAGTGGAAAGTGCCGACTACTTTTATTTATGGTTATCAAGACTGGATGAACTACCAAGGGGCTCAAGAAGCTGGCAAAAAGATGAAGGTCCCGTGCGAGATCATTAGGATTCCAGATGCTGGGCACTTTGTATTCATAGACCAACCCGATCGTTTCCATTCAGCTGTTTTTTATGCTTGCCGTAGATTTCTTTCGCCGGACCCTGCCGTTGAATCCTTTCCTGAAGGTTTGACACCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0008150 GO:0016298 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0042171 GO:0042592 GO:0048878 GO:0050801 GO:0052689 GO:0055081 GO:0055088 GO:0055089 GO:0055090 GO:0055091 GO:0065007 GO:0065008 GO:0070328 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko04923 map04923

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

343

Amino Acids

38.0

Weight (kDa)

7.67

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	69 - 310	1.9e-14	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	70 - 311	3e-24	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	72 - 315	1.8e-21	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24160 AT4G24160
fragaria_vesca	FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100
malus_domestica	MD00G1162000.v1.1 MD08G1017500.v1.1 MD15G1016400.v1.1
prunus_persica	Prupe.1G370200_v2.0.a1 Prupe.1G370200_v2.0.a1
pyrus_communis	pycom08g01530 pycom15g01440
rosa_chinensis	RchiOBHm_Chr6g0302201
rosa_laevigata	RLG00000011187
rosa_multiflora	Rmu_ssc0000160.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166000
rosa_rugosa	Rorug06G0313100
rosa_samantha	Rh6BG476900 Rh6DG425400
rosa_wichuraiana	Rw6G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	15, 36
AccB7I	CCANNNNNTGG	1 cut(s)	905
AccIII	TCCGGA	1 cut(s)	665
AciI	CCGC	3 cut(s)	119, 321, 714
AclWI	GGATC	3 cut(s)	141, 331, 514
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	3 cut(s)	15, 202, 262
AcuI	CTGAAG	3 cut(s)	378, 497, 1029
AfaI	GTAC	3 cut(s)	470, 542, 689
AfiI	CCNNNNNNNGG	2 cut(s)	135, 905
AgsI	TTSAA	4 cut(s)	93, 562, 636, 998
AluBI	AGCT	4 cut(s)	710, 721, 857, 950
AluI	AGCT	4 cut(s)	710, 721, 857, 950
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	3 cut(s)	141, 331, 514
AlwNI	CAGNNNCTG	1 cut(s)	905
Aor13HI	TCCGGA	1 cut(s)	665
AoxI	GGCC	3 cut(s)	30, 332, 578
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	3 cut(s)	15, 202, 262
Asp700I	GAANNNNTTC	1 cut(s)	1002
AspA2I	CCTAGG	1 cut(s)	58
AspS9I	GGNCC	7 cut(s)	48, 116, 578, 587, 642, 874, 985
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	112
AsuII	TTCGAA	1 cut(s)	601
AsuNHI	GCTAGC	1 cut(s)	710
AvaII	GGWCC	6 cut(s)	48, 116, 587, 642, 874, 985
AvrII	CCTAGG	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	912
BanII	GRGCYC	2 cut(s)	128, 850
BbvCI	CCTCAGC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	713
BceAI	ACGGC	2 cut(s)	951, 977
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciVI	GTATCC	2 cut(s)	224, 526
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	4 cut(s)	59, 575, 711, 759
BfuAI	ACCTGC	2 cut(s)	15, 36
BfuI	GTATCC	2 cut(s)	224, 526
BisI	GCNGC	1 cut(s)	702
BlnI	CCTAGG	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	703
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	6 cut(s)	48, 116, 587, 642, 874, 985
BmgT120I	GGNCC	7 cut(s)	48, 116, 578, 587, 642, 874, 985
BmiI	GGNNCC	6 cut(s)	64, 127, 588, 643, 876, 987
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	4 cut(s)	259, 470, 791, 892
BmtI	GCTAGC	1 cut(s)	714
BpmI	CTGGAG	1 cut(s)	675
Bpu10I	CCTNAGC	1 cut(s)	416
Bpu14I	TTCGAA	1 cut(s)	601
BpuEI	CTTGAG	2 cut(s)	228, 834
BpuMI	CCSGG	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	58, 841
BsaWI	WCCGGW	1 cut(s)	665
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 905
Bse1I	ACTGG	4 cut(s)	118, 279, 658, 833
Bse3DI	GCAATG	2 cut(s)	163, 294
BseAI	TCCGGA	1 cut(s)	665
BseDI	CCNNGG	2 cut(s)	58, 841
BseGI	GGATG	1 cut(s)	837
BseLI	CCNNNNNNNGG	2 cut(s)	135, 905
BseMI	GCAATG	2 cut(s)	163, 294
BseMII	CTCAG	2 cut(s)	357, 430
BseNI	ACTGG	4 cut(s)	118, 279, 658, 833
BseSI	GKGCMC	1 cut(s)	912
BseXI	GCAGC	1 cut(s)	713
BseYI	CCCAGC	2 cut(s)	512, 905
Bsh1285I	CGRYCG	1 cut(s)	937
BshFI	GGCC	3 cut(s)	32, 334, 580
BsiEI	CGRYCG	1 cut(s)	937
BsiSI	CCGG	4 cut(s)	51, 122, 666, 983
BsiWI	CGTACG	1 cut(s)	540
BslFI	GGGAC	3 cut(s)	655, 750, 860
BslI	CCNNNNNNNGG	2 cut(s)	135, 905
BsmAI	GTCTC	1 cut(s)	521
BsmBI	CGTCTC	1 cut(s)	521
BsmFI	GGGAC	3 cut(s)	655, 750, 860
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	3 cut(s)	32, 334, 580
Bsp119I	TTCGAA	1 cut(s)	601
Bsp1286I	GDGCHC	3 cut(s)	128, 850, 912
Bsp13I	TCCGGA	1 cut(s)	665
Bsp143I	GATC	6 cut(s)	146, 304, 323, 506, 885, 934
BspACI	CCGC	3 cut(s)	119, 321, 714
BspANI	GGCC	3 cut(s)	32, 334, 580
BspCNI	CTCAG	2 cut(s)	358, 429
BspEI	TCCGGA	1 cut(s)	665
BspLI	GGNNCC	6 cut(s)	64, 127, 588, 643, 876, 987
BspMI	ACCTGC	2 cut(s)	15, 36
BspOI	GCTAGC	1 cut(s)	714
BspPI	GGATC	3 cut(s)	141, 331, 514
BspT104I	TTCGAA	1 cut(s)	601
BsrDI	GCAATG	2 cut(s)	163, 294
BsrI	ACTGG	4 cut(s)	118, 279, 658, 833
BssECI	CCNNGG	2 cut(s)	58, 841
BssMI	GATC	6 cut(s)	146, 304, 323, 506, 885, 934
BssT1I	CCWWGG	2 cut(s)	58, 841
Bst4CI	ACNGT	4 cut(s)	100, 181, 236, 779
BstBI	TTCGAA	1 cut(s)	601
BstC8I	GCNNGC	4 cut(s)	332, 712, 859, 964
BstDEI	CTNAG	2 cut(s)	366, 416
BstF5I	GGATG	1 cut(s)	837
BstKTI	GATC	6 cut(s)	149, 307, 326, 509, 888, 937
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	6 cut(s)	146, 304, 323, 506, 885, 934
BstMCI	CGRYCG	1 cut(s)	937
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 327, 487, 707, 854
BstNSI	RCATGY	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	912
BstV1I	GCAGC	1 cut(s)	713
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BsuI	GTATCC	2 cut(s)	224, 526
BsuRI	GGCC	3 cut(s)	32, 334, 580
BtsCI	GGATG	1 cut(s)	837
BtsIMutI	CAGTG	3 cut(s)	111, 354, 784
BveI	ACCTGC	2 cut(s)	15, 36
Cac8I	GCNNGC	4 cut(s)	332, 712, 859, 964
CaiI	CAGNNNCTG	1 cut(s)	905
Cfr13I	GGNCC	7 cut(s)	48, 116, 578, 587, 642, 874, 985
Csp6I	GTAC	3 cut(s)	469, 541, 688
CviAII	CATG	2 cut(s)	345, 372
CviQI	GTAC	3 cut(s)	469, 541, 688
DdeI	CTNAG	2 cut(s)	366, 416
DpnI	GATC	6 cut(s)	148, 306, 325, 508, 887, 936
DpnII	GATC	6 cut(s)	146, 304, 323, 506, 885, 934
EaeI	YGGCCR	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	336
Eco130I	CCWWGG	2 cut(s)	58, 841
Eco147I	AGGCCT	1 cut(s)	334
Eco24I	GRGCYC	2 cut(s)	128, 850
Eco47I	GGWCC	6 cut(s)	48, 116, 587, 642, 874, 985
Eco57I	CTGAAG	3 cut(s)	378, 497, 1029
EcoO109I	RGGNCCY	2 cut(s)	578, 874
EcoRI	GAATTC	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	58, 841
EcoT38I	GRGCYC	2 cut(s)	128, 850
ErhI	CCWWGG	2 cut(s)	58, 841
Esp3I	CGTCTC	1 cut(s)	521
FaeI	CATG	2 cut(s)	348, 375
FaqI	GGGAC	3 cut(s)	655, 750, 860
FatI	CATG	2 cut(s)	344, 371
FauI	CCCGC	1 cut(s)	707
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	702
FokI	GGATG	1 cut(s)	844
FriOI	GRGCYC	2 cut(s)	128, 850
Fsp4HI	GCNGC	1 cut(s)	702
FspBI	CTAG	4 cut(s)	59, 575, 711, 759
GluI	GCNGC	1 cut(s)	702
GsaI	CCCAGC	2 cut(s)	516, 909
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	3 cut(s)	32, 334, 580
HapII	CCGG	4 cut(s)	51, 122, 666, 983
Hin1II	CATG	2 cut(s)	348, 375
HinfI	GANTC	7 cut(s)	80, 223, 383, 662, 763, 895, 998
HpaII	CCGG	4 cut(s)	51, 122, 666, 983
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	688
Hpy188I	TCNGA	4 cut(s)	151, 477, 526, 787
Hpy188III	TCNNGA	7 cut(s)	24, 93, 666, 824, 851, 899, 1007
Hpy8I	GTNNAC	1 cut(s)	688
Hpy99I	CGWCG	2 cut(s)	25, 38
HpyAV	CCTTC	2 cut(s)	865, 1004
HpyCH4III	ACNGT	4 cut(s)	100, 181, 236, 779
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	3 cut(s)	348, 461, 782
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 327, 487, 707, 854
HpyF3I	CTNAG	2 cut(s)	366, 416
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	2 cut(s)	348, 375
Kpn2I	TCCGGA	1 cut(s)	665
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	6 cut(s)	146, 304, 323, 506, 885, 934
LmnI	GCTCC	2 cut(s)	131, 718
Lsp1109I	GCAGC	1 cut(s)	713
LweI	GCATC	4 cut(s)	259, 470, 791, 892
MaeI	CTAG	4 cut(s)	59, 575, 711, 759
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	181, 605
MalI	GATC	6 cut(s)	148, 306, 325, 508, 887, 936
MboI	GATC	6 cut(s)	146, 304, 323, 506, 885, 934
MboII	GAAGA	3 cut(s)	173, 244, 371
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	3 cut(s)	128, 850, 912
MluCI	AATT	4 cut(s)	15, 202, 262, 557
MlyI	GAGTC	2 cut(s)	74, 772
MnlI	CCTC	7 cut(s)	76, 361, 385, 425, 540, 612, 652
MroI	TCCGGA	1 cut(s)	665
MroXI	GAANNNNTTC	1 cut(s)	1002
MseI	TTAA	3 cut(s)	486, 552, 728
MslI	CAYNNNNRTG	1 cut(s)	787
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	4 cut(s)	51, 122, 666, 983
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	439
MwoI	GCNNNNNNNGC	5 cut(s)	51, 327, 487, 707, 854
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	6 cut(s)	146, 304, 323, 506, 885, 934
NheI	GCTAGC	1 cut(s)	710
NlaIII	CATG	2 cut(s)	348, 375
NlaIV	GGNNCC	6 cut(s)	64, 127, 588, 643, 876, 987
NspI	RCATGY	1 cut(s)	348
NspV	TTCGAA	1 cut(s)	601
PceI	AGGCCT	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PctI	GAATGC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	1002
PfeI	GAWTC	5 cut(s)	223, 383, 662, 895, 998
Pfl23II	CGTACG	1 cut(s)	540
PflMI	CCANNNNNTGG	1 cut(s)	905
PkrI	GCNGC	1 cut(s)	703
Ple19I	CGATCG	1 cut(s)	937
PleI	GAGTC	2 cut(s)	74, 771
PpsI	GAGTC	2 cut(s)	74, 771
PpuMI	RGGWCCY	1 cut(s)	874
Psp5II	RGGWCCY	1 cut(s)	874
PspFI	CCCAGC	2 cut(s)	512, 905
PspLI	CGTACG	1 cut(s)	540
PspN4I	GGNNCC	6 cut(s)	64, 127, 588, 643, 876, 987
PspPI	GGNCC	7 cut(s)	48, 116, 578, 587, 642, 874, 985
PspPPI	RGGWCCY	1 cut(s)	874
PstNI	CAGNNNCTG	1 cut(s)	905
PsuI	RGATCY	1 cut(s)	506
PvuI	CGATCG	1 cut(s)	937
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	3 cut(s)	470, 542, 689
RsaNI	GTAC	3 cut(s)	469, 541, 688
RseI	CAYNNNNRTG	1 cut(s)	787
SaqAI	TTAA	3 cut(s)	486, 552, 728
SatI	GCNGC	1 cut(s)	702
Sau3AI	GATC	6 cut(s)	146, 304, 323, 506, 885, 934
Sau96I	GGNCC	7 cut(s)	48, 116, 578, 587, 642, 874, 985
SchI	GAGTC	2 cut(s)	74, 772
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	3 cut(s)	128, 850, 912
SfaNI	GCATC	4 cut(s)	259, 470, 791, 892
SfuI	TTCGAA	1 cut(s)	601
SinI	GGWCC	6 cut(s)	48, 116, 587, 642, 874, 985
SmiMI	CAYNNNNRTG	1 cut(s)	787
SmlI	CTYRAG	2 cut(s)	243, 849
SmoI	CTYRAG	2 cut(s)	243, 849
Sse9I	AATT	4 cut(s)	15, 202, 262, 557
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	3 cut(s)	119, 321, 714
SspMI	CTAG	4 cut(s)	59, 575, 711, 759
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	2 cut(s)	58, 841
TaaI	ACNGT	4 cut(s)	100, 181, 236, 779
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	5 cut(s)	23, 145, 267, 464, 601
TasI	AATT	4 cut(s)	15, 202, 262, 557
TfiI	GAWTC	5 cut(s)	223, 383, 662, 895, 998
Tru1I	TTAA	3 cut(s)	486, 552, 728
Tru9I	TTAA	3 cut(s)	486, 552, 728
TscAI	CASTG	3 cut(s)	118, 361, 784
TseI	GCWGC	1 cut(s)	701
TspDTI	ATGAA	8 cut(s)	17, 174, 367, 432, 510, 848, 884, 910
TspGWI	ACGGA	2 cut(s)	243, 545
TspRI	CASTG	3 cut(s)	118, 361, 784
Van91I	CCANNNNNTGG	1 cut(s)	905
VpaK11BI	GGWCC	6 cut(s)	48, 116, 587, 642, 874, 985
XapI	RAATTY	3 cut(s)	15, 202, 262
XceI	RCATGY	1 cut(s)	348
XmaJI	CCTAGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	1002
XspI	CTAG	4 cut(s)	59, 575, 711, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.