Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004797

Physical Location & Seq

Genomic Coordinates Forward (+)

7613275 .. 7616686

Gene Structure 3412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAACCTGCGTAGACTCTCGTCCAGAATGGCAGAAGAAATCAGTAGGTCCGCCGCCGCCGCCGAGCTCCGACCCTCTGCTTCCACCGCCACAAAGGCAAAGTCAAAATCGCTCTGGCCCTCCCTCCTCCGTTGGATCCCCACCTCCACCGATGACATCATCGCCGCCGAGAAGCGCCTCTCTCTCTCGTCGCGTAAGACTCCATATGTTCAGGAGCGGGTGAATATTGGATCCGGCCCGCCCGGGTCGAAGGTGAGGTGGTTTCGGTCGGCAAGCAATGAGGAAAGGTTTATCAACACGGTTACTTTTGACAGCAAAGAGGATTCTCCTACTCTTGTAATGGTTCACGGCTACGGTGCTTCTCAAGGTTTCTTCTTTAGAAATTTTGATGCCCTTGCAAGTCGGTTCAGGATCATTGCTATTGATCAACTTGGCTGGGGTGGATCAAGCAGACCTGATTTTACATGCAAAAGCACTGAAGAAACCGAAGCATGGTTTATTGATTCTTTGGAAGAATGGCGGAAGGCCAAAAATCTCAGCAACTTTATATTACTTGGACATTCATTTGGTGGGTATGTTGCAGCTAAGTATGCGCTAAAGCATCCGGAGCACATTAAGCATTTAGTTTTAGTGGGTTCTGCTGGGTTCTCGTCAGCGGAAGATGCAAGGAATGAGTGGATTATGCAGTTTAAAACAACATGGAAAGGAGCAATTATTAACCATTTATGGGAGTCTAATTTTACTCCTCAGAAGCTAATCAGAGGGTTAGGGCCTTGGGGTCCAAAGATTGTTCGGGGTTACACAAATACTAGATTTGGTGCTCGTGCAGCAGGGACCACCCTAAATGAACATGAATCAAAACTGCTAACAGATTACGTGTACCATACTTTAGCTGCCAAAGCAAGTGGAGAATTGTGCTTGAAATATATATTTTCTTTTGGAGCGTTTGCTCGGAAGCCTCTTCTTCAGAGTGCATCAGAGTGGAAAGTGCCAACTACTTTTATTTATGGCTATCAAGATTGGATGAATTATCAAGGGGCTCAAGAAGCTCGCAAGGATATGAAGGTCCCATGTGAGATTATTAGAGTTCCTGAGGCGGGACACTTTGTTTTCATAGACAATCCCGAGGGGTTCCATTCAGCTGTTTTGTACGCTTGCCGTCGATTTCTGTCACCTAACCCAGACAATGAATCTTTGCCTGAAAGTTTGACAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0008150 GO:0016298 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0042171 GO:0042592 GO:0048878 GO:0050801 GO:0052689 GO:0055081 GO:0055088 GO:0055089 GO:0055090 GO:0055091 GO:0065007 GO:0065008 GO:0070328 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko04923 map04923

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

406

Amino Acids

45.63

Weight (kDa)

9.32

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	110 - 375	1.7e-29	alpha/beta hydrolase fold
Hydrolase_4	PF12146	111 - 373	1.6e-17	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	112 - 378	1.2e-19	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24160 AT4G24160
fragaria_vesca	FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100
malus_domestica	MD00G1162000.v1.1 MD08G1017500.v1.1 MD15G1016400.v1.1
prunus_persica	Prupe.1G370200_v2.0.a1 Prupe.1G370200_v2.0.a1
pyrus_communis	pycom08g01530 pycom15g01440
rosa_chinensis	RchiOBHm_Chr6g0302201
rosa_laevigata	RLG00000011187
rosa_multiflora	Rmu_ssc0000160.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166000
rosa_rugosa	Rorug06G0313100
rosa_samantha	Rh6BG476900 Rh6DG425400
rosa_wichuraiana	Rw6G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	15
AccBSI	CCGCTC	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	1 cut(s)	193
AccIII	TCCGGA	1 cut(s)	604
AclWI	GGATC	6 cut(s)	130, 143, 225, 238, 419, 451
AcsI	RAATTY	1 cut(s)	382
AcuI	CTGAAG	2 cut(s)	498, 950
AfaI	GTAC	2 cut(s)	881, 1151
AfiI	CCNNNNNNNGG	3 cut(s)	492, 727, 1097
AflIII	ACRYGT	1 cut(s)	876
AgsI	TTSAA	1 cut(s)	922
AluBI	AGCT	7 cut(s)	67, 584, 754, 893, 1049, 1142, 1214
AluI	AGCT	7 cut(s)	67, 584, 754, 893, 1049, 1142, 1214
Alw21I	GWGCWC	3 cut(s)	69, 612, 823
AlwI	GGATC	6 cut(s)	130, 143, 225, 238, 419, 451
Ama87I	CYCGRG	2 cut(s)	242, 1124
Aor13HI	TCCGGA	1 cut(s)	604
AoxI	GGCC	4 cut(s)	116, 235, 525, 770
ApeKI	GCWGC	4 cut(s)	581, 827, 893, 1214
ApoI	RAATTY	1 cut(s)	382
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspLEI	GCGC	2 cut(s)	177, 595
AspS9I	GGNCC	7 cut(s)	48, 117, 236, 770, 779, 834, 1066
AsuC2I	CCSGG	2 cut(s)	243, 244
AsuHPI	GGTGA	3 cut(s)	232, 265, 1164
AvaI	CYCGRG	2 cut(s)	242, 1124
AvaII	GGWCC	4 cut(s)	48, 779, 834, 1066
AxyI	CCTNAGG	1 cut(s)	1092
BamHI	GGATCC	2 cut(s)	135, 230
BanII	GRGCYC	2 cut(s)	69, 1042
BauI	CACGAG	1 cut(s)	822
Bbv12I	GWGCWC	3 cut(s)	69, 612, 823
BbvI	GCAGC	4 cut(s)	593, 839, 880, 1201
BceAI	ACGGC	2 cut(s)	364, 1143
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	2 cut(s)	243, 244
BfaI	CTAG	1 cut(s)	810
BfoI	RGCGCY	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	8 cut(s)	54, 57, 60, 165, 582, 828, 894, 1215
BlsI	GCNGC	8 cut(s)	55, 58, 61, 166, 583, 829, 895, 1216
Bme1390I	CCNGG	2 cut(s)	243, 244
Bme18I	GGWCC	4 cut(s)	48, 779, 834, 1066
BmeT110I	CYCGRG	2 cut(s)	242, 1124
BmgT120I	GGNCC	7 cut(s)	48, 117, 236, 770, 779, 834, 1066
BmiI	GGNNCC	6 cut(s)	137, 232, 780, 835, 1068, 1133
BmrFI	CCNGG	2 cut(s)	243, 244
BmsI	GCATC	4 cut(s)	379, 610, 652, 983
BoxI	GACNNNNGTC	1 cut(s)	19
BpuEI	CTTGAG	2 cut(s)	348, 1026
BpuMI	CCSGG	2 cut(s)	243, 244
BsaAI	YACGTR	1 cut(s)	877
BsaJI	CCNNGG	3 cut(s)	242, 773, 1125
BsaWI	WCCGGW	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	3 cut(s)	492, 727, 1097
Bse21I	CCTNAGG	1 cut(s)	1092
Bse3DI	GCAATG	2 cut(s)	283, 414
BseAI	TCCGGA	1 cut(s)	604
BseDI	CCNNGG	3 cut(s)	242, 773, 1125
BseGI	GGATG	2 cut(s)	601, 1029
BseLI	CCNNNNNNNGG	3 cut(s)	492, 727, 1097
BseMI	GCAATG	2 cut(s)	283, 414
BseMII	CTCAG	3 cut(s)	550, 761, 1083
BseRI	GAGGAG	2 cut(s)	116, 735
BseXI	GCAGC	4 cut(s)	593, 839, 880, 1201
BseYI	CCCAGC	2 cut(s)	435, 641
BsgI	GTGCAG	1 cut(s)	846
Bsh1236I	CGCG	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	4 cut(s)	118, 237, 527, 772
BsiEI	CGRYCG	1 cut(s)	269
BsiHKAI	GWGCWC	3 cut(s)	69, 612, 823
BsiHKCI	CYCGRG	2 cut(s)	242, 1124
BsiSI	CCGG	3 cut(s)	234, 243, 605
BslFI	GGGAC	3 cut(s)	847, 1052, 1113
BslI	CCNNNNNNNGG	3 cut(s)	492, 727, 1097
BsmFI	GGGAC	3 cut(s)	847, 1052, 1113
BsnI	GGCC	4 cut(s)	118, 237, 527, 772
BsoBI	CYCGRG	2 cut(s)	242, 1124
Bsp1286I	GDGCHC	4 cut(s)	69, 612, 823, 1042
Bsp13I	TCCGGA	1 cut(s)	604
Bsp143I	GATC	5 cut(s)	135, 230, 411, 424, 443
BspANI	GGCC	4 cut(s)	118, 237, 527, 772
BspCNI	CTCAG	3 cut(s)	549, 760, 1084
BspEI	TCCGGA	1 cut(s)	604
BspFNI	CGCG	1 cut(s)	193
BspLI	GGNNCC	6 cut(s)	137, 232, 780, 835, 1068, 1133
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	6 cut(s)	130, 143, 225, 238, 419, 451
BsrBI	CCGCTC	1 cut(s)	217
BsrDI	GCAATG	2 cut(s)	283, 414
BssECI	CCNNGG	3 cut(s)	242, 773, 1125
BssMI	GATC	5 cut(s)	135, 230, 411, 424, 443
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	773
Bst2BI	CACGAG	1 cut(s)	822
Bst4CI	ACNGT	2 cut(s)	301, 356
Bst6I	CTCTTC	1 cut(s)	966
BstBAI	YACGTR	1 cut(s)	877
BstC8I	GCNNGC	4 cut(s)	239, 274, 1051, 1156
BstDEI	CTNAG	4 cut(s)	536, 585, 747, 1092
BstF5I	GGATG	2 cut(s)	601, 1029
BstFNI	CGCG	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	177, 595
BstKTI	GATC	5 cut(s)	138, 233, 414, 427, 446
BstMBI	GATC	5 cut(s)	135, 230, 411, 424, 443
BstMCI	CGRYCG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	468
BstPAI	GACNNNNGTC	1 cut(s)	19
BstSCI	CCNGG	2 cut(s)	241, 242
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	4 cut(s)	593, 839, 880, 1201
BstX2I	RGATCY	2 cut(s)	135, 230
BstYI	RGATCY	2 cut(s)	135, 230
Bsu36I	CCTNAGG	1 cut(s)	1092
BsuRI	GGCC	4 cut(s)	118, 237, 527, 772
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	601, 1029
BtsIMutI	CAGTG	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	15
Cac8I	GCNNGC	4 cut(s)	239, 274, 1051, 1156
CfoI	GCGC	2 cut(s)	177, 595
Cfr13I	GGNCC	7 cut(s)	48, 117, 236, 770, 779, 834, 1066
Cfr9I	CCCGGG	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	880, 1150
CspCI	CAANNNNNGTGG	2 cut(s)	886, 921
CviAII	CATG	5 cut(s)	465, 492, 699, 851, 1071
CviQI	GTAC	2 cut(s)	880, 1150
DdeI	CTNAG	4 cut(s)	536, 585, 747, 1092
DpnI	GATC	5 cut(s)	137, 232, 413, 426, 445
DpnII	GATC	5 cut(s)	135, 230, 411, 424, 443
DraI	TTTAAA	1 cut(s)	691
Eam1104I	CTCTTC	1 cut(s)	966
EarI	CTCTTC	1 cut(s)	966
EciI	GGCGGA	2 cut(s)	40, 535
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	773
Eco24I	GRGCYC	2 cut(s)	69, 1042
Eco47I	GGWCC	4 cut(s)	48, 779, 834, 1066
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	498, 950
Eco81I	CCTNAGG	1 cut(s)	1092
Eco88I	CYCGRG	2 cut(s)	242, 1124
EcoICRI	GAGCTC	1 cut(s)	67
EcoO109I	RGGNCCY	2 cut(s)	770, 1066
EcoT14I	CCWWGG	1 cut(s)	773
EcoT38I	GRGCYC	2 cut(s)	69, 1042
ErhI	CCWWGG	1 cut(s)	773
FaeI	CATG	5 cut(s)	468, 495, 702, 854, 1074
FaqI	GGGAC	3 cut(s)	847, 1052, 1113
FatI	CATG	5 cut(s)	464, 491, 698, 850, 1070
FauI	CCCGC	3 cut(s)	210, 246, 1090
FauNDI	CATATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	8 cut(s)	54, 57, 60, 165, 582, 828, 894, 1215
FokI	GGATG	2 cut(s)	588, 1036
FriOI	GRGCYC	2 cut(s)	69, 1042
Fsp4HI	GCNGC	8 cut(s)	54, 57, 60, 165, 582, 828, 894, 1215
FspBI	CTAG	1 cut(s)	810
GlaI	GCGC	2 cut(s)	176, 594
GluI	GCNGC	8 cut(s)	54, 57, 60, 165, 582, 828, 894, 1215
GsaI	CCCAGC	2 cut(s)	439, 645
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	4 cut(s)	118, 237, 527, 772
HapII	CCGG	3 cut(s)	234, 243, 605
HhaI	GCGC	2 cut(s)	177, 595
Hin1II	CATG	5 cut(s)	468, 495, 702, 854, 1074
Hin6I	GCGC	2 cut(s)	175, 593
HinP1I	GCGC	2 cut(s)	175, 593
HinfI	GANTC	7 cut(s)	15, 199, 323, 503, 731, 854, 1190
HpaII	CCGG	3 cut(s)	234, 243, 605
HphI	GGTGA	3 cut(s)	232, 265, 1164
Hpy166II	GTNNAC	3 cut(s)	14, 346, 880
Hpy188I	TCNGA	6 cut(s)	71, 750, 761, 954, 969, 979
Hpy188III	TCNNGA	8 cut(s)	24, 212, 409, 605, 1016, 1043, 1091, 1124
Hpy8I	GTNNAC	3 cut(s)	14, 346, 880
Hpy99I	CGWCG	2 cut(s)	193, 1164
HpyAV	CCTTC	3 cut(s)	244, 517, 1057
HpyCH4III	ACNGT	2 cut(s)	301, 356
HpyCH4IV	ACGT	1 cut(s)	876
HpyCH4V	TGCA	7 cut(s)	398, 468, 581, 665, 685, 827, 974
HpyF3I	CTNAG	4 cut(s)	536, 585, 747, 1092
HpySE526I	ACGT	1 cut(s)	876
Hsp92II	CATG	5 cut(s)	468, 495, 702, 854, 1074
HspAI	GCGC	2 cut(s)	175, 593
Kpn2I	TCCGGA	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	5 cut(s)	135, 230, 411, 424, 443
LmnI	GCTCC	5 cut(s)	72, 214, 607, 707, 941
Lsp1109I	GCAGC	4 cut(s)	593, 839, 880, 1201
LweI	GCATC	4 cut(s)	379, 610, 652, 983
MaeI	CTAG	1 cut(s)	810
MaeII	ACGT	1 cut(s)	876
MaeIII	GTNAC	3 cut(s)	301, 797, 1170
MalI	GATC	5 cut(s)	137, 232, 413, 426, 445
MbiI	CCGCTC	1 cut(s)	217
MboI	GATC	5 cut(s)	135, 230, 411, 424, 443
MboII	GAAGA	7 cut(s)	47, 364, 491, 524, 671, 953, 956
MflI	RGATCY	2 cut(s)	135, 230
MhlI	GDGCHC	4 cut(s)	69, 612, 823, 1042
MluCI	AATT	5 cut(s)	382, 711, 736, 911, 1027
MlyI	GAGTC	3 cut(s)	9, 193, 740
MmeI	TCCRAC	2 cut(s)	94, 113
MroI	TCCGGA	1 cut(s)	604
MseI	TTAA	3 cut(s)	615, 690, 717
MslI	CAYNNNNRTG	1 cut(s)	979
MspA1I	CMGCKG	3 cut(s)	656, 1142, 1214
MspI	CCGG	3 cut(s)	234, 243, 605
MspR9I	CCNGG	2 cut(s)	243, 244
MvnI	CGCG	1 cut(s)	193
NciI	CCSGG	2 cut(s)	243, 244
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	5 cut(s)	135, 230, 411, 424, 443
NlaIII	CATG	5 cut(s)	468, 495, 702, 854, 1074
NlaIV	GGNNCC	6 cut(s)	137, 232, 780, 835, 1068, 1133
NmeAIII	GCCGAG	2 cut(s)	88, 193
NmuCI	GTSAC	1 cut(s)	1170
NspI	RCATGY	1 cut(s)	468
PfeI	GAWTC	4 cut(s)	323, 503, 854, 1190
PkrI	GCNGC	8 cut(s)	55, 58, 61, 166, 583, 829, 895, 1216
PleI	GAGTC	3 cut(s)	9, 193, 739
PpsI	GAGTC	3 cut(s)	9, 193, 739
Ppu21I	YACGTR	1 cut(s)	877
PpuMI	RGGWCCY	1 cut(s)	1066
PshAI	GACNNNNGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	1066
PspFI	CCCAGC	2 cut(s)	435, 641
PspN4I	GGNNCC	6 cut(s)	137, 232, 780, 835, 1068, 1133
PspPI	GGNCC	7 cut(s)	48, 117, 236, 770, 779, 834, 1066
PspPPI	RGGWCCY	1 cut(s)	1066
PsuI	RGATCY	2 cut(s)	135, 230
PvuII	CAGCTG	2 cut(s)	1142, 1214
RsaI	GTAC	2 cut(s)	881, 1151
RsaNI	GTAC	2 cut(s)	880, 1150
RseI	CAYNNNNRTG	1 cut(s)	979
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	615, 690, 717
SatI	GCNGC	8 cut(s)	54, 57, 60, 165, 582, 828, 894, 1215
Sau3AI	GATC	5 cut(s)	135, 230, 411, 424, 443
Sau96I	GGNCC	7 cut(s)	48, 117, 236, 770, 779, 834, 1066
SchI	GAGTC	3 cut(s)	9, 193, 740
ScrFI	CCNGG	2 cut(s)	243, 244
SduI	GDGCHC	4 cut(s)	69, 612, 823, 1042
SfaNI	GCATC	4 cut(s)	379, 610, 652, 983
SinI	GGWCC	4 cut(s)	48, 779, 834, 1066
SmaI	CCCGGG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	979
SmlI	CTYRAG	2 cut(s)	363, 1041
SmoI	CTYRAG	2 cut(s)	363, 1041
Sse9I	AATT	5 cut(s)	382, 711, 736, 911, 1027
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	810
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	241, 242
StyI	CCWWGG	1 cut(s)	773
TaaI	ACNGT	2 cut(s)	301, 356
TaiI	ACGT	1 cut(s)	879
TaqI	TCGA	2 cut(s)	248, 1162
TaqII	GACCGA	1 cut(s)	255
TasI	AATT	5 cut(s)	382, 711, 736, 911, 1027
TauI	GCSGC	4 cut(s)	56, 59, 62, 167
TfiI	GAWTC	4 cut(s)	323, 503, 854, 1190
Tru1I	TTAA	3 cut(s)	615, 690, 717
Tru9I	TTAA	3 cut(s)	615, 690, 717
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	1170
TseI	GCWGC	4 cut(s)	581, 827, 893, 1214
Tsp45I	GTSAC	1 cut(s)	1170
TspDTI	ATGAA	8 cut(s)	17, 552, 861, 867, 1040, 1076, 1102, 1203
TspGWI	ACGGA	1 cut(s)	119
TspMI	CCCGGG	1 cut(s)	242
TspRI	CASTG	1 cut(s)	481
VpaK11BI	GGWCC	4 cut(s)	48, 779, 834, 1066
XapI	RAATTY	1 cut(s)	382
XceI	RCATGY	1 cut(s)	468
XmaI	CCCGGG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.