RLG00000011187

Abhydrolase domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
7459269 .. 7462384
3116 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011187

Sequence Viewer

Length: 1242 bp
ATGAACCTGCGTAGACTCTCGTCCAGAATGGCTGAAGAAATCAGTAGGTCCGCCGCCGCCGCCGAGCTCCGACCCTCTGCTTCCACCTCCACCGCCACGGCCACAAAGGCAAAGGCAAAGGCAAAGTCAAAATCGCTCTGGCCCTCCCTCCTCCGTTGGATCCCCACCTCCACCGATGACATCATCGCCGCCGAGAAGCGCCTGCTCTCTCTTGTCGCGACTCCATATGTTCAGGAGCGGGTGAATATTGGATCCGGCCCGCCCGGGTCGAAGGTGAGGTGGTTTCGGTCGGCAAGCAATGAGGAAAGGTTTATCAACACGGTTACTTTTGACAGCAAAGAGGATTCTCCTACTCTTGTAATGGTTCACGGCTACGGTGCTTCTCAAGGTTTCTTCTTTAGAAATTTTGATGCCCTTGCAAGTCGGTTCAGGGTCATTGCTATTGATCAACTTGGCTGGGGTGGATCAAGCAGACCTGATTTTACATGCAAAAGCACTGAAGAAACCGAAGCATGGTTTATTGATTCTTTGGAAGAATGGCGGAAAGCCAAAAATCTCAGCAACTTTATTTTACTTGGACATTCATTTGGTGGGTATGTTGCAGCTAAGTATGCGCTAAAGCATCCGGAGCACATTAAGCATTTAGTTTTAGTGGGTTCTGCTGGGTTCTCATCAGCGGAAGATGCAAGGAATGAGTGGATTATGCAGTTTAAAACAACATGGAAAGGAGCAATTATTAACCATTTATGGGAGTCTAATTTTACTCCTCAGAAGCTAATCAGAGGGTTAGGGCCCTGGGGTCCAAAGATTGTTCGGGGTTACACAAATACTAGATTTGGCGCTCGTGCAGCAGGGACCACCCTAAATGAACATGAATCACAACTGCTAACAGATTACGTGTACCATACTTTAGCTGCCAAAGCAAGTGGAGAATTGTGCTTGAAATATATATTTTCTTTCGGAGCATTTGCTCGGAAGCCTCTTCTTCAGAGTGCATCAGAGTGGAAAGTGCCAACTACTTTTATTTATGGCTATCAAGATTGGATGAATTATCAAGGGGCTCAAGAAGCTCGCAAGGATATGAAGGTCCCATGTGAGATTATTAGAGTTCCTGAGGCGGGACACTTTGTATTCATAGACAATCCCGAGGGTTTCCATTCAGCTGTTTTGTACGCTTGCCGTAGATTTCTGTCACCTAACCCAGACAATGAATCTTTGCCTGAAAGTTTGACAGCTGCTTGA

Protein Analysis

414

Amino Acids

46.2

Weight (kDa)

9.25

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 117 - 382 6.4e-30 alpha/beta hydrolase fold
Hydrolase_4 PF12146 118 - 380 3.7e-18 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 119 - 385 2.6e-20 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 13
AccII CGCG 1 cut(s) 218
AccIII TCCGGA 1 cut(s) 625
AclWI GGATC 5 cut(s) 154, 167, 246, 259, 472
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 3 cut(s) 54, 519, 971
AfaI GTAC 2 cut(s) 902, 1172
AfiI CCNNNNNNNGG 3 cut(s) 513, 748, 1118
AflIII ACRYGT 1 cut(s) 897
AgsI TTSAA 1 cut(s) 943
AjnI CCWGG 1 cut(s) 794
AluBI AGCT 7 cut(s) 67, 605, 775, 914, 1070, 1163, 1235
AluI AGCT 7 cut(s) 67, 605, 775, 914, 1070, 1163, 1235
Alw21I GWGCWC 2 cut(s) 69, 633
AlwI GGATC 5 cut(s) 154, 167, 246, 259, 472
Ama87I CYCGRG 2 cut(s) 263, 1145
Aor13HI TCCGGA 1 cut(s) 625
AoxI GGCC 4 cut(s) 99, 140, 256, 791
ApaI GGGCCC 1 cut(s) 795
ApeKI GCWGC 4 cut(s) 602, 848, 914, 1235
ApoI RAATTY 1 cut(s) 403
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AspLEI GCGC 3 cut(s) 201, 616, 842
AspS9I GGNCC 8 cut(s) 48, 141, 257, 791, 792, 800, 855, 1087
AsuC2I CCSGG 2 cut(s) 264, 265
AsuHPI GGTGA 3 cut(s) 253, 286, 1185
AvaI CYCGRG 2 cut(s) 263, 1145
AvaII GGWCC 4 cut(s) 48, 800, 855, 1087
AxyI CCTNAGG 1 cut(s) 1113
BaeGI GKGCMC 1 cut(s) 795
BamHI GGATCC 2 cut(s) 159, 251
BanII GRGCYC 3 cut(s) 69, 795, 1063
BauI CACGAG 1 cut(s) 843
Bbv12I GWGCWC 2 cut(s) 69, 633
BbvI GCAGC 4 cut(s) 614, 860, 901, 1222
BceAI ACGGC 3 cut(s) 114, 385, 1164
BciT130I CCWGG 1 cut(s) 796
BclI TGATCA 1 cut(s) 445
BcnI CCSGG 2 cut(s) 264, 265
BfaI CTAG 1 cut(s) 831
BfoI RGCGCY 2 cut(s) 202, 843
BfuAI ACCTGC 1 cut(s) 15
BglI GCCNNNNNGGC 1 cut(s) 107
BisI GCNGC 8 cut(s) 54, 57, 60, 189, 603, 849, 915, 1236
BlsI GCNGC 8 cut(s) 55, 58, 61, 190, 604, 850, 916, 1237
Bme1390I CCNGG 3 cut(s) 264, 265, 796
Bme18I GGWCC 4 cut(s) 48, 800, 855, 1087
BmeT110I CYCGRG 2 cut(s) 263, 1145
BmgT120I GGNCC 8 cut(s) 48, 141, 257, 791, 792, 800, 855, 1087
BmiI GGNNCC 6 cut(s) 161, 253, 793, 801, 856, 1089
BmrFI CCNGG 3 cut(s) 264, 265, 796
BmsI GCATC 4 cut(s) 400, 631, 673, 1004
BoxI GACNNNNGTC 1 cut(s) 19
BpuEI CTTGAG 2 cut(s) 369, 1047
BpuMI CCSGG 2 cut(s) 264, 265
BsaAI YACGTR 1 cut(s) 898
BsaJI CCNNGG 5 cut(s) 96, 263, 794, 795, 1146
BsaWI WCCGGW 1 cut(s) 625
Bsc4I CCNNNNNNNGG 3 cut(s) 513, 748, 1118
Bse21I CCTNAGG 1 cut(s) 1113
Bse3DI GCAATG 2 cut(s) 304, 435
BseAI TCCGGA 1 cut(s) 625
BseBI CCWGG 1 cut(s) 796
BseDI CCNNGG 5 cut(s) 96, 263, 794, 795, 1146
BseGI GGATG 2 cut(s) 622, 1050
BseLI CCNNNNNNNGG 3 cut(s) 513, 748, 1118
BseMI GCAATG 2 cut(s) 304, 435
BseMII CTCAG 3 cut(s) 571, 782, 1104
BseRI GAGGAG 2 cut(s) 140, 756
BseSI GKGCMC 1 cut(s) 795
BseXI GCAGC 4 cut(s) 614, 860, 901, 1222
BseYI CCCAGC 2 cut(s) 456, 662
BsgI GTGCAG 1 cut(s) 867
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 290
BshFI GGCC 4 cut(s) 101, 142, 258, 793
BsiEI CGRYCG 1 cut(s) 290
BsiHKAI GWGCWC 2 cut(s) 69, 633
BsiHKCI CYCGRG 2 cut(s) 263, 1145
BsiSI CCGG 3 cut(s) 255, 264, 626
BslFI GGGAC 3 cut(s) 868, 1073, 1134
BslI CCNNNNNNNGG 3 cut(s) 513, 748, 1118
BsmFI GGGAC 3 cut(s) 868, 1073, 1134
BsnI GGCC 4 cut(s) 101, 142, 258, 793
BsoBI CYCGRG 2 cut(s) 263, 1145
Bsp120I GGGCCC 1 cut(s) 791
Bsp1286I GDGCHC 4 cut(s) 69, 633, 795, 1063
Bsp13I TCCGGA 1 cut(s) 625
Bsp143I GATC 4 cut(s) 159, 251, 445, 464
Bsp68I TCGCGA 1 cut(s) 218
BspANI GGCC 4 cut(s) 101, 142, 258, 793
BspCNI CTCAG 3 cut(s) 570, 781, 1105
BspEI TCCGGA 1 cut(s) 625
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 6 cut(s) 161, 253, 793, 801, 856, 1089
BspMI ACCTGC 1 cut(s) 15
BspPI GGATC 5 cut(s) 154, 167, 246, 259, 472
BsrBI CCGCTC 1 cut(s) 238
BsrDI GCAATG 2 cut(s) 304, 435
BssECI CCNNGG 5 cut(s) 96, 263, 794, 795, 1146
BssMI GATC 4 cut(s) 159, 251, 445, 464
BssSI CACGAG 1 cut(s) 843
Bst2BI CACGAG 1 cut(s) 843
Bst2UI CCWGG 1 cut(s) 796
Bst4CI ACNGT 2 cut(s) 322, 377
Bst6I CTCTTC 1 cut(s) 987
BstBAI YACGTR 1 cut(s) 898
BstC8I GCNNGC 5 cut(s) 203, 260, 295, 1072, 1177
BstDEI CTNAG 4 cut(s) 557, 606, 768, 1113
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 622, 1050
BstFNI CGCG 1 cut(s) 218
BstH2I RGCGCY 2 cut(s) 202, 843
BstHHI GCGC 3 cut(s) 201, 616, 842
BstKTI GATC 4 cut(s) 162, 254, 448, 467
BstMBI GATC 4 cut(s) 159, 251, 445, 464
BstMCI CGRYCG 1 cut(s) 290
BstMWI GCNNNNNNNGC 9 cut(s) 59, 107, 611, 628, 637, 683, 848, 920, 1067
BstNI CCWGG 1 cut(s) 796
BstNSI RCATGY 1 cut(s) 489
BstPAI GACNNNNGTC 1 cut(s) 19
BstSCI CCNGG 3 cut(s) 262, 263, 794
BstSLI GKGCMC 1 cut(s) 795
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 4 cut(s) 614, 860, 901, 1222
BstX2I RGATCY 2 cut(s) 159, 251
BstYI RGATCY 2 cut(s) 159, 251
Bsu36I CCTNAGG 1 cut(s) 1113
BsuRI GGCC 4 cut(s) 101, 142, 258, 793
BtgI CCRYGG 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 169
BtsCI GGATG 2 cut(s) 622, 1050
BtsIMutI CAGTG 1 cut(s) 495
BtuMI TCGCGA 1 cut(s) 218
BveI ACCTGC 1 cut(s) 15
Cac8I GCNNGC 5 cut(s) 203, 260, 295, 1072, 1177
CfoI GCGC 3 cut(s) 201, 616, 842
Cfr13I GGNCC 8 cut(s) 48, 141, 257, 791, 792, 800, 855, 1087
Cfr9I CCCGGG 1 cut(s) 263
Csp6I GTAC 2 cut(s) 901, 1171
CspCI CAANNNNNGTGG 2 cut(s) 907, 942
CviAII CATG 5 cut(s) 486, 513, 720, 872, 1092
CviQI GTAC 2 cut(s) 901, 1171
DdeI CTNAG 4 cut(s) 557, 606, 768, 1113
DpnI GATC 4 cut(s) 161, 253, 447, 466
DpnII GATC 4 cut(s) 159, 251, 445, 464
DraI TTTAAA 1 cut(s) 712
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 987
EarI CTCTTC 1 cut(s) 987
EciI GGCGGA 2 cut(s) 40, 556
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 3 cut(s) 69, 795, 1063
Eco47I GGWCC 4 cut(s) 48, 800, 855, 1087
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 3 cut(s) 54, 519, 971
Eco81I CCTNAGG 1 cut(s) 1113
Eco88I CYCGRG 2 cut(s) 263, 1145
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 3 cut(s) 791, 792, 1087
EcoRII CCWGG 1 cut(s) 794
EcoT38I GRGCYC 3 cut(s) 69, 795, 1063
FaeI CATG 5 cut(s) 489, 516, 723, 875, 1095
FaqI GGGAC 3 cut(s) 868, 1073, 1134
FatI CATG 5 cut(s) 485, 512, 719, 871, 1091
FauI CCCGC 3 cut(s) 231, 267, 1111
FauNDI CATATG 1 cut(s) 226
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 8 cut(s) 54, 57, 60, 189, 603, 849, 915, 1236
FokI GGATG 2 cut(s) 609, 1057
FriOI GRGCYC 3 cut(s) 69, 795, 1063
Fsp4HI GCNGC 8 cut(s) 54, 57, 60, 189, 603, 849, 915, 1236
FspBI CTAG 1 cut(s) 831
GlaI GCGC 3 cut(s) 200, 615, 841
GluI GCNGC 8 cut(s) 54, 57, 60, 189, 603, 849, 915, 1236
GsaI CCCAGC 2 cut(s) 460, 666
HaeII RGCGCY 2 cut(s) 202, 843
HaeIII GGCC 4 cut(s) 101, 142, 258, 793
HapII CCGG 3 cut(s) 255, 264, 626
HhaI GCGC 3 cut(s) 201, 616, 842
Hin1II CATG 5 cut(s) 489, 516, 723, 875, 1095
Hin6I GCGC 3 cut(s) 199, 614, 840
HinP1I GCGC 3 cut(s) 199, 614, 840
HinfI GANTC 7 cut(s) 15, 220, 344, 524, 752, 875, 1211
HpaII CCGG 3 cut(s) 255, 264, 626
HphI GGTGA 3 cut(s) 253, 286, 1185
Hpy166II GTNNAC 3 cut(s) 14, 367, 901
Hpy188I TCNGA 7 cut(s) 71, 771, 782, 962, 975, 990, 1000
Hpy188III TCNNGA 8 cut(s) 24, 217, 233, 626, 1037, 1064, 1112, 1145
Hpy8I GTNNAC 3 cut(s) 14, 367, 901
HpyAV CCTTC 2 cut(s) 265, 1078
HpyCH4III ACNGT 2 cut(s) 322, 377
HpyCH4IV ACGT 1 cut(s) 897
HpyCH4V TGCA 7 cut(s) 419, 489, 602, 686, 706, 848, 995
HpyF10VI GCNNNNNNNGC 9 cut(s) 59, 107, 611, 628, 637, 683, 848, 920, 1067
HpyF3I CTNAG 4 cut(s) 557, 606, 768, 1113
HpySE526I ACGT 1 cut(s) 897
Hsp92II CATG 5 cut(s) 489, 516, 723, 875, 1095
HspAI GCGC 3 cut(s) 199, 614, 840
Kpn2I TCCGGA 1 cut(s) 625
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 4 cut(s) 159, 251, 445, 464
LmnI GCTCC 5 cut(s) 72, 235, 628, 728, 962
Lsp1109I GCAGC 4 cut(s) 614, 860, 901, 1222
LweI GCATC 4 cut(s) 400, 631, 673, 1004
MaeI CTAG 1 cut(s) 831
MaeII ACGT 1 cut(s) 897
MaeIII GTNAC 3 cut(s) 322, 818, 1191
MalI GATC 4 cut(s) 161, 253, 447, 466
MbiI CCGCTC 1 cut(s) 238
MboI GATC 4 cut(s) 159, 251, 445, 464
MboII GAAGA 7 cut(s) 47, 385, 512, 545, 692, 974, 977
MflI RGATCY 2 cut(s) 159, 251
MhlI GDGCHC 4 cut(s) 69, 633, 795, 1063
MluCI AATT 5 cut(s) 403, 732, 757, 932, 1048
MlyI GAGTC 3 cut(s) 9, 214, 761
MmeI TCCRAC 2 cut(s) 94, 137
MroI TCCGGA 1 cut(s) 625
MseI TTAA 3 cut(s) 636, 711, 738
MslI CAYNNNNRTG 1 cut(s) 1000
MspA1I CMGCKG 3 cut(s) 677, 1163, 1235
MspI CCGG 3 cut(s) 255, 264, 626
MspR9I CCNGG 3 cut(s) 264, 265, 796
MvaI CCWGG 1 cut(s) 796
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 9 cut(s) 59, 107, 611, 628, 637, 683, 848, 920, 1067
NciI CCSGG 2 cut(s) 264, 265
NdeI CATATG 1 cut(s) 226
NdeII GATC 4 cut(s) 159, 251, 445, 464
NlaIII CATG 5 cut(s) 489, 516, 723, 875, 1095
NlaIV GGNNCC 6 cut(s) 161, 253, 793, 801, 856, 1089
NmeAIII GCCGAG 2 cut(s) 88, 217
NmuCI GTSAC 1 cut(s) 1191
NruI TCGCGA 1 cut(s) 218
NspI RCATGY 1 cut(s) 489
PasI CCCWGGG 1 cut(s) 795
PfeI GAWTC 4 cut(s) 344, 524, 875, 1211
PkrI GCNGC 8 cut(s) 55, 58, 61, 190, 604, 850, 916, 1237
PleI GAGTC 3 cut(s) 9, 214, 760
PpsI GAGTC 3 cut(s) 9, 214, 760
Ppu21I YACGTR 1 cut(s) 898
PpuMI RGGWCCY 1 cut(s) 1087
PshAI GACNNNNGTC 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 1087
Psp6I CCWGG 1 cut(s) 794
PspFI CCCAGC 2 cut(s) 456, 662
PspGI CCWGG 1 cut(s) 794
PspN4I GGNNCC 6 cut(s) 161, 253, 793, 801, 856, 1089
PspOMI GGGCCC 1 cut(s) 791
PspPI GGNCC 8 cut(s) 48, 141, 257, 791, 792, 800, 855, 1087
PspPPI RGGWCCY 1 cut(s) 1087
PsuI RGATCY 2 cut(s) 159, 251
PvuII CAGCTG 2 cut(s) 1163, 1235
RruI TCGCGA 1 cut(s) 218
RsaI GTAC 2 cut(s) 902, 1172
RsaNI GTAC 2 cut(s) 901, 1171
RseI CAYNNNNRTG 1 cut(s) 1000
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 636, 711, 738
SatI GCNGC 8 cut(s) 54, 57, 60, 189, 603, 849, 915, 1236
Sau3AI GATC 4 cut(s) 159, 251, 445, 464
Sau96I GGNCC 8 cut(s) 48, 141, 257, 791, 792, 800, 855, 1087
SchI GAGTC 3 cut(s) 9, 214, 761
ScrFI CCNGG 3 cut(s) 264, 265, 796
SduI GDGCHC 4 cut(s) 69, 633, 795, 1063
SfaNI GCATC 4 cut(s) 400, 631, 673, 1004
SinI GGWCC 4 cut(s) 48, 800, 855, 1087
SmaI CCCGGG 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 1000
SmlI CTYRAG 2 cut(s) 384, 1062
SmoI CTYRAG 2 cut(s) 384, 1062
Sse9I AATT 5 cut(s) 403, 732, 757, 932, 1048
SspI AATATT 1 cut(s) 247
SspMI CTAG 1 cut(s) 831
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 3 cut(s) 262, 263, 794
TaaI ACNGT 2 cut(s) 322, 377
TaiI ACGT 1 cut(s) 900
TaqI TCGA 1 cut(s) 269
TaqII GACCGA 1 cut(s) 276
TasI AATT 5 cut(s) 403, 732, 757, 932, 1048
TauI GCSGC 4 cut(s) 56, 59, 62, 191
TfiI GAWTC 4 cut(s) 344, 524, 875, 1211
Tru1I TTAA 3 cut(s) 636, 711, 738
Tru9I TTAA 3 cut(s) 636, 711, 738
TscAI CASTG 1 cut(s) 502
TseFI GTSAC 1 cut(s) 1191
TseI GCWGC 4 cut(s) 602, 848, 914, 1235
Tsp45I GTSAC 1 cut(s) 1191
TspDTI ATGAA 8 cut(s) 17, 573, 882, 888, 1061, 1097, 1123, 1224
TspGWI ACGGA 1 cut(s) 143
TspMI CCCGGG 1 cut(s) 263
TspRI CASTG 1 cut(s) 502
VpaK11BI GGWCC 4 cut(s) 48, 800, 855, 1087
XapI RAATTY 1 cut(s) 403
XceI RCATGY 1 cut(s) 489
XmaI CCCGGG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.