Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004797

Physical Location & Seq

Genomic Coordinates Forward (+)

68343144 .. 68346493

Gene Structure 3350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG476900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAACCTGCGTAGACTCTCGTCCAGAATGGCCGAAGAAATCAGTAGGTCCGCCGCCGCCGAGCTCCCTTCCACCGCCACAAAGGCAAAGTCAAAATCGCTCTGGCCCTCCCTCCTCCGTTGGATCCCCACCTCCACCGATGACATCATCGCCGCCGAGAAGCGCCTCCTCTCTCTTGTCGCGACTCCATATGTTCAGGAGCGGGTGAATATTGGATCCGGCCCGCCCGGGTCGAAGGTGAGGTGGTTTCGGTCGGCAAGCAATGAGGAAAGGTTTATCAACACGGTTACTTTTGACAGCAAAGAGGATTCTCCTACTCTTGTAATGGTTCACGGCTACGGTCCTTCTCAAGGTTTCTTCTTTAGAAATTTTGATGCCCTTGCAAGTCGGTTCAGGGCCATTGCTATTGATCAACTTGGCTGGGGTGGATCAAGCAGACCTGATTTTACATGCAAAAGCACTGAAGAAACCGAAGCATGGTTTATTGATTCTTTGGAAGAATGGCGGAAAGCCAAAAATCTCAGCAACTTTATATTACTTGGACATTCATTTGGTGGGTATGTTGCAGCTAAGTATGCGCTAAAGCATCCGGAGCACATTAAGCATTTAGTTTTAGTGGGTCCTGTTGGGTTCTCGTCAGCGGAAGATGCAAGGAATGAGCGGATTATGCAGTTTAAAACAACATGGAAAGGAGCAATTATTAACCATTTATGGGAGTCTAATTTTACTCCTCAGAAGCTAATCAGAGGGTTAGGGCCTTGGGGTCCAAAGATTGCTCGAGGTTACACAAATACTAGATTTGGCGCTCGTGCAGCAGGGACCACCCTAAATGAACATGAATCACAACTGCTAACAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0008150 GO:0016298 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0042171 GO:0042592 GO:0048878 GO:0050801 GO:0052689 GO:0055081 GO:0055088 GO:0055089 GO:0055090 GO:0055091 GO:0065007 GO:0065008 GO:0070328 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko04923 map04923

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

286

Amino Acids

31.96

Weight (kDa)

9.7

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	105 - 221	3.3e-22	alpha/beta hydrolase fold
Hydrolase_4	PF12146	106 - 239	7.9e-16	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	107 - 242	2.9e-15	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24160 AT4G24160
fragaria_vesca	FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100
malus_domestica	MD00G1162000.v1.1 MD08G1017500.v1.1 MD15G1016400.v1.1
prunus_persica	Prupe.1G370200_v2.0.a1 Prupe.1G370200_v2.0.a1
pyrus_communis	pycom08g01530 pycom15g01440
rosa_chinensis	RchiOBHm_Chr6g0302201
rosa_laevigata	RLG00000011187
rosa_multiflora	Rmu_ssc0000160.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166000
rosa_rugosa	Rorug06G0313100
rosa_samantha	Rh6BG476900 Rh6DG425400
rosa_wichuraiana	Rw6G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	15
AccBSI	CCGCTC	2 cut(s)	202, 661
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	589
AclWI	GGATC	5 cut(s)	118, 131, 210, 223, 436
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	483
AfiI	CCNNNNNNNGG	3 cut(s)	350, 477, 712
AluBI	AGCT	3 cut(s)	64, 569, 739
AluI	AGCT	3 cut(s)	64, 569, 739
Alw21I	GWGCWC	2 cut(s)	66, 597
AlwI	GGATC	5 cut(s)	118, 131, 210, 223, 436
Ama87I	CYCGRG	2 cut(s)	227, 777
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	5 cut(s)	30, 104, 220, 396, 755
ApeKI	GCWGC	2 cut(s)	566, 812
ApoI	RAATTY	1 cut(s)	367
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspLEI	GCGC	3 cut(s)	165, 580, 806
AspS9I	GGNCC	9 cut(s)	48, 105, 221, 341, 396, 620, 755, 764, 819
AsuC2I	CCSGG	2 cut(s)	228, 229
AsuHPI	GGTGA	2 cut(s)	217, 250
AvaI	CYCGRG	2 cut(s)	227, 777
AvaII	GGWCC	5 cut(s)	48, 341, 620, 764, 819
BamHI	GGATCC	2 cut(s)	123, 215
BanII	GRGCYC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	807
Bbv12I	GWGCWC	2 cut(s)	66, 597
BbvI	GCAGC	2 cut(s)	578, 824
BceAI	ACGGC	1 cut(s)	349
BclI	TGATCA	1 cut(s)	409
BcnI	CCSGG	2 cut(s)	228, 229
BfaI	CTAG	1 cut(s)	795
BfoI	RGCGCY	2 cut(s)	166, 807
BfuAI	ACCTGC	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	83
BisI	GCNGC	5 cut(s)	54, 57, 153, 567, 813
BlsI	GCNGC	5 cut(s)	55, 58, 154, 568, 814
Bme1390I	CCNGG	2 cut(s)	228, 229
Bme18I	GGWCC	5 cut(s)	48, 341, 620, 764, 819
BmeT110I	CYCGRG	2 cut(s)	227, 777
BmgT120I	GGNCC	9 cut(s)	48, 105, 221, 341, 396, 620, 755, 764, 819
BmiI	GGNNCC	5 cut(s)	125, 217, 621, 765, 820
BmrFI	CCNGG	2 cut(s)	228, 229
BmsI	GCATC	3 cut(s)	364, 595, 637
BoxI	GACNNNNGTC	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	333
BpuMI	CCSGG	2 cut(s)	228, 229
BsaJI	CCNNGG	2 cut(s)	227, 758
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 477, 712
Bse3DI	GCAATG	2 cut(s)	268, 399
BseAI	TCCGGA	1 cut(s)	589
BseDI	CCNNGG	2 cut(s)	227, 758
BseGI	GGATG	1 cut(s)	586
BseLI	CCNNNNNNNGG	3 cut(s)	350, 477, 712
BseMI	GCAATG	2 cut(s)	268, 399
BseMII	CTCAG	2 cut(s)	535, 746
BseRI	GAGGAG	3 cut(s)	104, 158, 720
BseXI	GCAGC	2 cut(s)	578, 824
BseYI	CCCAGC	1 cut(s)	420
BsgI	GTGCAG	1 cut(s)	831
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	5 cut(s)	32, 106, 222, 398, 757
BsiEI	CGRYCG	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	66, 597
BsiHKCI	CYCGRG	2 cut(s)	227, 777
BsiSI	CCGG	3 cut(s)	219, 228, 590
BslFI	GGGAC	1 cut(s)	832
BslI	CCNNNNNNNGG	3 cut(s)	350, 477, 712
BsmFI	GGGAC	1 cut(s)	832
BsnI	GGCC	5 cut(s)	32, 106, 222, 398, 757
BsoBI	CYCGRG	2 cut(s)	227, 777
Bsp1286I	GDGCHC	2 cut(s)	66, 597
Bsp13I	TCCGGA	1 cut(s)	589
Bsp143I	GATC	4 cut(s)	123, 215, 409, 428
Bsp68I	TCGCGA	1 cut(s)	182
BspANI	GGCC	5 cut(s)	32, 106, 222, 398, 757
BspCNI	CTCAG	2 cut(s)	534, 745
BspEI	TCCGGA	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	5 cut(s)	125, 217, 621, 765, 820
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	5 cut(s)	118, 131, 210, 223, 436
BsrBI	CCGCTC	2 cut(s)	202, 661
BsrDI	GCAATG	2 cut(s)	268, 399
BssECI	CCNNGG	2 cut(s)	227, 758
BssMI	GATC	4 cut(s)	123, 215, 409, 428
BssSI	CACGAG	1 cut(s)	807
BssT1I	CCWWGG	1 cut(s)	758
Bst2BI	CACGAG	1 cut(s)	807
Bst4CI	ACNGT	2 cut(s)	286, 341
BstC8I	GCNNGC	2 cut(s)	224, 259
BstDEI	CTNAG	3 cut(s)	521, 570, 732
BstENI	CCTNNNNNAGG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	586
BstFNI	CGCG	1 cut(s)	182
BstH2I	RGCGCY	2 cut(s)	166, 807
BstHHI	GCGC	3 cut(s)	165, 580, 806
BstKTI	GATC	4 cut(s)	126, 218, 412, 431
BstMBI	GATC	4 cut(s)	123, 215, 409, 428
BstMCI	CGRYCG	1 cut(s)	254
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 575, 592, 601, 647, 667, 812
BstNSI	RCATGY	1 cut(s)	453
BstPAI	GACNNNNGTC	1 cut(s)	19
BstSCI	CCNGG	2 cut(s)	226, 227
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	578, 824
BstX2I	RGATCY	2 cut(s)	123, 215
BstYI	RGATCY	2 cut(s)	123, 215
BsuRI	GGCC	5 cut(s)	32, 106, 222, 398, 757
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	459
BtuMI	TCGCGA	1 cut(s)	182
BveI	ACCTGC	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	224, 259
CfoI	GCGC	3 cut(s)	165, 580, 806
Cfr13I	GGNCC	9 cut(s)	48, 105, 221, 341, 396, 620, 755, 764, 819
Cfr9I	CCCGGG	1 cut(s)	227
CviAII	CATG	4 cut(s)	450, 477, 684, 836
DdeI	CTNAG	3 cut(s)	521, 570, 732
DpnI	GATC	4 cut(s)	125, 217, 411, 430
DpnII	GATC	4 cut(s)	123, 215, 409, 428
DraI	TTTAAA	1 cut(s)	676
EaeI	YGGCCR	1 cut(s)	30
EciI	GGCGGA	2 cut(s)	40, 520
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	758
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	5 cut(s)	48, 341, 620, 764, 819
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	483
Eco88I	CYCGRG	2 cut(s)	227, 777
EcoICRI	GAGCTC	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	348
EcoO109I	RGGNCCY	2 cut(s)	620, 755
EcoT14I	CCWWGG	1 cut(s)	758
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	4 cut(s)	453, 480, 687, 839
FaqI	GGGAC	1 cut(s)	832
FatI	CATG	4 cut(s)	449, 476, 683, 835
FauI	CCCGC	2 cut(s)	195, 231
FauNDI	CATATG	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	409
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	5 cut(s)	54, 57, 153, 567, 813
FokI	GGATG	1 cut(s)	573
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	5 cut(s)	54, 57, 153, 567, 813
FspBI	CTAG	1 cut(s)	795
GlaI	GCGC	3 cut(s)	164, 579, 805
GluI	GCNGC	5 cut(s)	54, 57, 153, 567, 813
GsaI	CCCAGC	1 cut(s)	424
HaeII	RGCGCY	2 cut(s)	166, 807
HaeIII	GGCC	5 cut(s)	32, 106, 222, 398, 757
HapII	CCGG	3 cut(s)	219, 228, 590
HhaI	GCGC	3 cut(s)	165, 580, 806
Hin1II	CATG	4 cut(s)	453, 480, 687, 839
Hin6I	GCGC	3 cut(s)	163, 578, 804
HinP1I	GCGC	3 cut(s)	163, 578, 804
HinfI	GANTC	6 cut(s)	15, 184, 308, 488, 716, 839
HpaII	CCGG	3 cut(s)	219, 228, 590
HphI	GGTGA	2 cut(s)	217, 250
Hpy166II	GTNNAC	2 cut(s)	14, 331
Hpy188I	TCNGA	2 cut(s)	735, 746
Hpy188III	TCNNGA	4 cut(s)	24, 181, 197, 590
Hpy8I	GTNNAC	2 cut(s)	14, 331
HpyAV	CCTTC	3 cut(s)	78, 229, 354
HpyCH4III	ACNGT	2 cut(s)	286, 341
HpyCH4V	TGCA	6 cut(s)	383, 453, 566, 650, 670, 812
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 575, 592, 601, 647, 667, 812
HpyF3I	CTNAG	3 cut(s)	521, 570, 732
Hsp92II	CATG	4 cut(s)	453, 480, 687, 839
HspAI	GCGC	3 cut(s)	163, 578, 804
Kpn2I	TCCGGA	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	123, 215, 409, 428
LmnI	GCTCC	4 cut(s)	69, 199, 592, 692
Lsp1109I	GCAGC	2 cut(s)	578, 824
LweI	GCATC	3 cut(s)	364, 595, 637
MaeI	CTAG	1 cut(s)	795
MaeIII	GTNAC	2 cut(s)	286, 782
MalI	GATC	4 cut(s)	125, 217, 411, 430
MbiI	CCGCTC	2 cut(s)	202, 661
MboI	GATC	4 cut(s)	123, 215, 409, 428
MboII	GAAGA	5 cut(s)	47, 349, 476, 509, 656
MflI	RGATCY	2 cut(s)	123, 215
MhlI	GDGCHC	2 cut(s)	66, 597
MluCI	AATT	3 cut(s)	367, 696, 721
MlyI	GAGTC	3 cut(s)	9, 178, 725
MmeI	TCCRAC	1 cut(s)	101
MroI	TCCGGA	1 cut(s)	589
MseI	TTAA	3 cut(s)	600, 675, 702
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	3 cut(s)	219, 228, 590
MspR9I	CCNGG	2 cut(s)	228, 229
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	7 cut(s)	83, 575, 592, 601, 647, 667, 812
NciI	CCSGG	2 cut(s)	228, 229
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	4 cut(s)	123, 215, 409, 428
NlaIII	CATG	4 cut(s)	453, 480, 687, 839
NlaIV	GGNNCC	5 cut(s)	125, 217, 621, 765, 820
NmeAIII	GCCGAG	2 cut(s)	85, 181
NruI	TCGCGA	1 cut(s)	182
NspI	RCATGY	1 cut(s)	453
PaeR7I	CTCGAG	1 cut(s)	777
PfeI	GAWTC	3 cut(s)	308, 488, 839
PkrI	GCNGC	5 cut(s)	55, 58, 154, 568, 814
PleI	GAGTC	3 cut(s)	9, 178, 724
PpsI	GAGTC	3 cut(s)	9, 178, 724
PpuMI	RGGWCCY	1 cut(s)	620
PshAI	GACNNNNGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	420
PspN4I	GGNNCC	5 cut(s)	125, 217, 621, 765, 820
PspPI	GGNCC	9 cut(s)	48, 105, 221, 341, 396, 620, 755, 764, 819
PspPPI	RGGWCCY	1 cut(s)	620
PspXI	VCTCGAGB	1 cut(s)	777
PsuI	RGATCY	2 cut(s)	123, 215
RruI	TCGCGA	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	600, 675, 702
SatI	GCNGC	5 cut(s)	54, 57, 153, 567, 813
Sau3AI	GATC	4 cut(s)	123, 215, 409, 428
Sau96I	GGNCC	9 cut(s)	48, 105, 221, 341, 396, 620, 755, 764, 819
SchI	GAGTC	3 cut(s)	9, 178, 725
ScrFI	CCNGG	2 cut(s)	228, 229
SduI	GDGCHC	2 cut(s)	66, 597
SfaNI	GCATC	3 cut(s)	364, 595, 637
Sfr274I	CTCGAG	1 cut(s)	777
SinI	GGWCC	5 cut(s)	48, 341, 620, 764, 819
SlaI	CTCGAG	1 cut(s)	777
SmaI	CCCGGG	1 cut(s)	229
SmlI	CTYRAG	2 cut(s)	348, 777
SmoI	CTYRAG	2 cut(s)	348, 777
Sse9I	AATT	3 cut(s)	367, 696, 721
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	795
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	226, 227
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	2 cut(s)	286, 341
TaqI	TCGA	2 cut(s)	233, 778
TaqII	GACCGA	1 cut(s)	240
TasI	AATT	3 cut(s)	367, 696, 721
TauI	GCSGC	3 cut(s)	56, 59, 155
TfiI	GAWTC	3 cut(s)	308, 488, 839
Tru1I	TTAA	3 cut(s)	600, 675, 702
Tru9I	TTAA	3 cut(s)	600, 675, 702
TscAI	CASTG	1 cut(s)	466
TseI	GCWGC	2 cut(s)	566, 812
TspDTI	ATGAA	4 cut(s)	17, 537, 846, 852
TspGWI	ACGGA	1 cut(s)	107
TspMI	CCCGGG	1 cut(s)	227
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	5 cut(s)	48, 341, 620, 764, 819
XagI	CCTNNNNNAGG	1 cut(s)	348
XapI	RAATTY	1 cut(s)	367
XceI	RCATGY	1 cut(s)	453
XhoI	CTCGAG	1 cut(s)	777
XmaI	CCCGGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.