Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004797

Physical Location & Seq

Genomic Coordinates Reverse (-)

61243085 .. 61245979

Gene Structure 2895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAACCTGCGTAGACTCTCGTCCAGAATGGCAGAAGAAATCAGTAGGTCCGCCGCCGCCGCCGAGCTCCGACCCTCTGCTTCCACCGCCACCGCCAAAAAATCAAAATCGCTCTGGCCCTCCCTCCTCCGTTGGATCCCGACCTCCACCGATGACATCATCGCCGCCGAGAAGCGCCTCCTCTCTCTTGTCGCGACTCCATATGTTCAGGAGCGGGTGAATATTGGATCCGGCCCGCCCGGGTCGAAGGTGAGGTGGTTTCGGTCGGCAAGCAATGAGGAAAGGTTTATCAACACGGTTACTTTTGACAGCAAAGAGGATTCTCCTACTCTTGTAATGGTTCACGGCTACGGTGCTTCTCAAGGTTTCTTCTTTAGAAATTTTGATGCCCTTGCAAGTCGGTTCAGGGTCATTGCTATTGATCAACTTGGCTGGGGTGGATCAAGCAGACCTGATTTTACATGCAAAAGCACTGAAGAAACCGAAGCATGGTTTATTGATTCTTTGGAAGAATGGCGGAAAGCCAAAAATCTCAGCAACTTTATATTACTTGGACATTCATTTGGTGGGTATGTTGCAGCTAAGTATGCGCTAAAGTTTAAAACAACATGGAAAGGAGCAATTATTAACCATTTATGGGAGTCTAATTTTACTCCTCAGAAGCTAATCAGAGGGTTAGGGCCTTGGGGTCCAAAGATTGTTCGGGGTTACACAAATACTAGATTTGGCGCTCGTGCAGCAGGGACCTCCCTAAATGAACATGAATCACAACTGCTAACAGATTACGTGTACCATACTTTAGCTGCCAAAGCAAGTGGAGAATTGTGCTTGAAATATATATTTTCTTTCGGAGCGTTTGCTCGGAAGCCTCTTCTTCAGAGTGCATCAGAGTGGAAAGTGCCAACTACTTTTATTTATGGCTATCAAGATTGGATGAATTATCAAGGGGCTCAAGAAGCTCGTAAAGATATGAAGGTCCCATGTGAGATTATTAGAGTTCCTGAGGCGGGACACTTTGTATTCATAGACGATCCCGAGGGTTTCCATTCAGCTGTTTTGTACGCTTGCCGTAGATTTCTGTCACCTAACCCAGACAATGAATCTTTGCCTGAAAGTTTGACAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004623 GO:0008150 GO:0016298 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0042171 GO:0042592 GO:0048878 GO:0050801 GO:0052689 GO:0055081 GO:0055088 GO:0055089 GO:0055090 GO:0055091 GO:0065007 GO:0065008 GO:0070328 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko04923 map04923

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

376

Amino Acids

42.18

Weight (kDa)

9.2

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	109 - 345	7.9e-22	alpha/beta hydrolase fold
Hydrolase_4	PF12146	110 - 343	2.8e-14	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	111 - 348	3.2e-19	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24160 AT4G24160
fragaria_vesca	FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100 FvH4_2g39100
malus_domestica	MD00G1162000.v1.1 MD08G1017500.v1.1 MD15G1016400.v1.1
prunus_persica	Prupe.1G370200_v2.0.a1 Prupe.1G370200_v2.0.a1
pyrus_communis	pycom08g01530 pycom15g01440
rosa_chinensis	RchiOBHm_Chr6g0302201
rosa_laevigata	RLG00000011187
rosa_multiflora	Rmu_ssc0000160.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166000
rosa_rugosa	Rorug06G0313100
rosa_samantha	Rh6BG476900 Rh6DG425400
rosa_wichuraiana	Rw6G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	15
AccBSI	CCGCTC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	1 cut(s)	194
AclWI	GGATC	6 cut(s)	130, 143, 222, 235, 448, 1025
AcsI	RAATTY	1 cut(s)	379
AcuI	CTGAAG	2 cut(s)	495, 860
AfaI	GTAC	2 cut(s)	791, 1061
AfiI	CCNNNNNNNGG	3 cut(s)	489, 637, 1007
AflIII	ACRYGT	1 cut(s)	786
AgsI	TTSAA	1 cut(s)	832
AluBI	AGCT	7 cut(s)	67, 581, 664, 803, 959, 1052, 1124
AluI	AGCT	7 cut(s)	67, 581, 664, 803, 959, 1052, 1124
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	6 cut(s)	130, 143, 222, 235, 448, 1025
Ama87I	CYCGRG	2 cut(s)	239, 1034
AoxI	GGCC	3 cut(s)	116, 232, 680
ApeKI	GCWGC	4 cut(s)	578, 737, 803, 1124
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	3 cut(s)	177, 592, 731
AspS9I	GGNCC	7 cut(s)	48, 117, 233, 680, 689, 744, 976
AsuC2I	CCSGG	2 cut(s)	240, 241
AsuHPI	GGTGA	3 cut(s)	229, 262, 1074
AvaI	CYCGRG	2 cut(s)	239, 1034
AvaII	GGWCC	4 cut(s)	48, 689, 744, 976
AxyI	CCTNAGG	1 cut(s)	1002
BamHI	GGATCC	2 cut(s)	135, 227
BanII	GRGCYC	2 cut(s)	69, 952
BauI	CACGAG	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	590, 749, 790, 1111
BceAI	ACGGC	2 cut(s)	361, 1053
BclI	TGATCA	1 cut(s)	421
BcnI	CCSGG	2 cut(s)	240, 241
BfaI	CTAG	1 cut(s)	720
BfoI	RGCGCY	2 cut(s)	178, 732
BfuAI	ACCTGC	1 cut(s)	15
BisI	GCNGC	8 cut(s)	54, 57, 60, 165, 579, 738, 804, 1125
BlsI	GCNGC	8 cut(s)	55, 58, 61, 166, 580, 739, 805, 1126
Bme1390I	CCNGG	2 cut(s)	240, 241
Bme18I	GGWCC	4 cut(s)	48, 689, 744, 976
BmeT110I	CYCGRG	2 cut(s)	239, 1034
BmgT120I	GGNCC	7 cut(s)	48, 117, 233, 680, 689, 744, 976
BmiI	GGNNCC	5 cut(s)	137, 229, 690, 745, 978
BmrFI	CCNGG	2 cut(s)	240, 241
BmsI	GCATC	2 cut(s)	376, 893
BoxI	GACNNNNGTC	1 cut(s)	19
BpuEI	CTTGAG	2 cut(s)	345, 936
BpuMI	CCSGG	2 cut(s)	240, 241
BsaAI	YACGTR	1 cut(s)	787
BsaJI	CCNNGG	3 cut(s)	239, 683, 1035
Bsc4I	CCNNNNNNNGG	3 cut(s)	489, 637, 1007
Bse21I	CCTNAGG	1 cut(s)	1002
Bse3DI	GCAATG	2 cut(s)	280, 411
BseDI	CCNNGG	3 cut(s)	239, 683, 1035
BseGI	GGATG	1 cut(s)	939
BseLI	CCNNNNNNNGG	3 cut(s)	489, 637, 1007
BseMI	GCAATG	2 cut(s)	280, 411
BseMII	CTCAG	3 cut(s)	547, 671, 993
BseRI	GAGGAG	3 cut(s)	116, 170, 645
BseXI	GCAGC	4 cut(s)	590, 749, 790, 1111
BseYI	CCCAGC	1 cut(s)	432
BsgI	GTGCAG	1 cut(s)	756
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	266
BshFI	GGCC	3 cut(s)	118, 234, 682
BsiEI	CGRYCG	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	2 cut(s)	239, 1034
BsiSI	CCGG	2 cut(s)	231, 240
BslFI	GGGAC	3 cut(s)	757, 962, 1023
BslI	CCNNNNNNNGG	3 cut(s)	489, 637, 1007
BsmFI	GGGAC	3 cut(s)	757, 962, 1023
BsnI	GGCC	3 cut(s)	118, 234, 682
BsoBI	CYCGRG	2 cut(s)	239, 1034
Bsp1286I	GDGCHC	2 cut(s)	69, 952
Bsp143I	GATC	5 cut(s)	135, 227, 421, 440, 1030
Bsp68I	TCGCGA	1 cut(s)	194
BspANI	GGCC	3 cut(s)	118, 234, 682
BspCNI	CTCAG	3 cut(s)	546, 670, 994
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	5 cut(s)	137, 229, 690, 745, 978
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	6 cut(s)	130, 143, 222, 235, 448, 1025
BsrBI	CCGCTC	1 cut(s)	214
BsrDI	GCAATG	2 cut(s)	280, 411
BssECI	CCNNGG	3 cut(s)	239, 683, 1035
BssMI	GATC	5 cut(s)	135, 227, 421, 440, 1030
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	1 cut(s)	683
Bst2BI	CACGAG	1 cut(s)	732
Bst4CI	ACNGT	2 cut(s)	298, 353
Bst6I	CTCTTC	1 cut(s)	876
BstBAI	YACGTR	1 cut(s)	787
BstC8I	GCNNGC	3 cut(s)	236, 271, 1066
BstDEI	CTNAG	4 cut(s)	533, 582, 657, 1002
BstF5I	GGATG	1 cut(s)	939
BstFNI	CGCG	1 cut(s)	194
BstH2I	RGCGCY	2 cut(s)	178, 732
BstHHI	GCGC	3 cut(s)	177, 592, 731
BstKTI	GATC	5 cut(s)	138, 230, 424, 443, 1033
BstMBI	GATC	5 cut(s)	135, 227, 421, 440, 1030
BstMCI	CGRYCG	1 cut(s)	266
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 86, 587, 737, 809, 956
BstNSI	RCATGY	1 cut(s)	465
BstPAI	GACNNNNGTC	1 cut(s)	19
BstSCI	CCNGG	2 cut(s)	238, 239
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	4 cut(s)	590, 749, 790, 1111
BstX2I	RGATCY	2 cut(s)	135, 227
BstYI	RGATCY	2 cut(s)	135, 227
Bsu36I	CCTNAGG	1 cut(s)	1002
BsuRI	GGCC	3 cut(s)	118, 234, 682
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	939
BtsIMutI	CAGTG	1 cut(s)	471
BtuMI	TCGCGA	1 cut(s)	194
BveI	ACCTGC	1 cut(s)	15
Cac8I	GCNNGC	3 cut(s)	236, 271, 1066
CfoI	GCGC	3 cut(s)	177, 592, 731
Cfr13I	GGNCC	7 cut(s)	48, 117, 233, 680, 689, 744, 976
Cfr9I	CCCGGG	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	790, 1060
CspCI	CAANNNNNGTGG	2 cut(s)	796, 831
CviAII	CATG	5 cut(s)	462, 489, 609, 761, 981
CviQI	GTAC	2 cut(s)	790, 1060
DdeI	CTNAG	4 cut(s)	533, 582, 657, 1002
DpnI	GATC	5 cut(s)	137, 229, 423, 442, 1032
DpnII	GATC	5 cut(s)	135, 227, 421, 440, 1030
DraI	TTTAAA	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	876
EarI	CTCTTC	1 cut(s)	876
EciI	GGCGGA	2 cut(s)	40, 532
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	683
Eco24I	GRGCYC	2 cut(s)	69, 952
Eco47I	GGWCC	4 cut(s)	48, 689, 744, 976
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	495, 860
Eco81I	CCTNAGG	1 cut(s)	1002
Eco88I	CYCGRG	2 cut(s)	239, 1034
EcoICRI	GAGCTC	1 cut(s)	67
EcoO109I	RGGNCCY	3 cut(s)	680, 744, 976
EcoT14I	CCWWGG	1 cut(s)	683
EcoT38I	GRGCYC	2 cut(s)	69, 952
ErhI	CCWWGG	1 cut(s)	683
FaeI	CATG	5 cut(s)	465, 492, 612, 764, 984
FaqI	GGGAC	3 cut(s)	757, 962, 1023
FatI	CATG	5 cut(s)	461, 488, 608, 760, 980
FauI	CCCGC	3 cut(s)	207, 243, 1000
FauNDI	CATATG	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	8 cut(s)	54, 57, 60, 165, 579, 738, 804, 1125
FokI	GGATG	1 cut(s)	946
FriOI	GRGCYC	2 cut(s)	69, 952
Fsp4HI	GCNGC	8 cut(s)	54, 57, 60, 165, 579, 738, 804, 1125
FspBI	CTAG	1 cut(s)	720
GlaI	GCGC	3 cut(s)	176, 591, 730
GluI	GCNGC	8 cut(s)	54, 57, 60, 165, 579, 738, 804, 1125
GsaI	CCCAGC	1 cut(s)	436
HaeII	RGCGCY	2 cut(s)	178, 732
HaeIII	GGCC	3 cut(s)	118, 234, 682
HapII	CCGG	2 cut(s)	231, 240
HhaI	GCGC	3 cut(s)	177, 592, 731
Hin1II	CATG	5 cut(s)	465, 492, 612, 764, 984
Hin6I	GCGC	3 cut(s)	175, 590, 729
HinP1I	GCGC	3 cut(s)	175, 590, 729
HinfI	GANTC	7 cut(s)	15, 196, 320, 500, 641, 764, 1100
HpaII	CCGG	2 cut(s)	231, 240
HphI	GGTGA	3 cut(s)	229, 262, 1074
Hpy166II	GTNNAC	3 cut(s)	14, 343, 790
Hpy188I	TCNGA	7 cut(s)	71, 660, 671, 851, 864, 879, 889
Hpy188III	TCNNGA	8 cut(s)	24, 139, 193, 209, 926, 953, 1001, 1034
Hpy8I	GTNNAC	3 cut(s)	14, 343, 790
HpyAV	CCTTC	2 cut(s)	241, 967
HpyCH4III	ACNGT	2 cut(s)	298, 353
HpyCH4IV	ACGT	1 cut(s)	786
HpyCH4V	TGCA	5 cut(s)	395, 465, 578, 737, 884
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 86, 587, 737, 809, 956
HpyF3I	CTNAG	4 cut(s)	533, 582, 657, 1002
HpySE526I	ACGT	1 cut(s)	786
Hsp92II	CATG	5 cut(s)	465, 492, 612, 764, 984
HspAI	GCGC	3 cut(s)	175, 590, 729
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	5 cut(s)	135, 227, 421, 440, 1030
LmnI	GCTCC	4 cut(s)	72, 211, 617, 851
Lsp1109I	GCAGC	4 cut(s)	590, 749, 790, 1111
LweI	GCATC	2 cut(s)	376, 893
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	1 cut(s)	786
MaeIII	GTNAC	3 cut(s)	298, 707, 1080
MalI	GATC	5 cut(s)	137, 229, 423, 442, 1032
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	5 cut(s)	135, 227, 421, 440, 1030
MboII	GAAGA	6 cut(s)	47, 361, 488, 521, 863, 866
MflI	RGATCY	2 cut(s)	135, 227
MhlI	GDGCHC	2 cut(s)	69, 952
MluCI	AATT	5 cut(s)	379, 621, 646, 821, 937
MlyI	GAGTC	3 cut(s)	9, 190, 650
MmeI	TCCRAC	2 cut(s)	94, 113
MseI	TTAA	2 cut(s)	600, 627
MslI	CAYNNNNRTG	1 cut(s)	889
MspA1I	CMGCKG	2 cut(s)	1052, 1124
MspI	CCGG	2 cut(s)	231, 240
MspR9I	CCNGG	2 cut(s)	240, 241
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	6 cut(s)	59, 86, 587, 737, 809, 956
NciI	CCSGG	2 cut(s)	240, 241
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	5 cut(s)	135, 227, 421, 440, 1030
NlaIII	CATG	5 cut(s)	465, 492, 612, 764, 984
NlaIV	GGNNCC	5 cut(s)	137, 229, 690, 745, 978
NmeAIII	GCCGAG	2 cut(s)	88, 193
NmuCI	GTSAC	1 cut(s)	1080
NruI	TCGCGA	1 cut(s)	194
NspI	RCATGY	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	320, 500, 764, 1100
PkrI	GCNGC	8 cut(s)	55, 58, 61, 166, 580, 739, 805, 1126
PleI	GAGTC	3 cut(s)	9, 190, 649
PpsI	GAGTC	3 cut(s)	9, 190, 649
Ppu21I	YACGTR	1 cut(s)	787
PpuMI	RGGWCCY	2 cut(s)	744, 976
PshAI	GACNNNNGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	69
Psp5II	RGGWCCY	2 cut(s)	744, 976
PspFI	CCCAGC	1 cut(s)	432
PspN4I	GGNNCC	5 cut(s)	137, 229, 690, 745, 978
PspPI	GGNCC	7 cut(s)	48, 117, 233, 680, 689, 744, 976
PspPPI	RGGWCCY	2 cut(s)	744, 976
PsuI	RGATCY	2 cut(s)	135, 227
PvuII	CAGCTG	2 cut(s)	1052, 1124
RruI	TCGCGA	1 cut(s)	194
RsaI	GTAC	2 cut(s)	791, 1061
RsaNI	GTAC	2 cut(s)	790, 1060
RseI	CAYNNNNRTG	1 cut(s)	889
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	600, 627
SatI	GCNGC	8 cut(s)	54, 57, 60, 165, 579, 738, 804, 1125
Sau3AI	GATC	5 cut(s)	135, 227, 421, 440, 1030
Sau96I	GGNCC	7 cut(s)	48, 117, 233, 680, 689, 744, 976
SchI	GAGTC	3 cut(s)	9, 190, 650
ScrFI	CCNGG	2 cut(s)	240, 241
SduI	GDGCHC	2 cut(s)	69, 952
SfaNI	GCATC	2 cut(s)	376, 893
SinI	GGWCC	4 cut(s)	48, 689, 744, 976
SmaI	CCCGGG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	889
SmlI	CTYRAG	2 cut(s)	360, 951
SmoI	CTYRAG	2 cut(s)	360, 951
Sse9I	AATT	5 cut(s)	379, 621, 646, 821, 937
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	1 cut(s)	720
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	238, 239
StyI	CCWWGG	1 cut(s)	683
TaaI	ACNGT	2 cut(s)	298, 353
TaiI	ACGT	1 cut(s)	789
TaqI	TCGA	1 cut(s)	245
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	5 cut(s)	379, 621, 646, 821, 937
TauI	GCSGC	4 cut(s)	56, 59, 62, 167
TfiI	GAWTC	4 cut(s)	320, 500, 764, 1100
Tru1I	TTAA	2 cut(s)	600, 627
Tru9I	TTAA	2 cut(s)	600, 627
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	1080
TseI	GCWGC	4 cut(s)	578, 737, 803, 1124
Tsp45I	GTSAC	1 cut(s)	1080
TspDTI	ATGAA	8 cut(s)	17, 549, 771, 777, 950, 986, 1012, 1113
TspGWI	ACGGA	1 cut(s)	119
TspMI	CCCGGG	1 cut(s)	239
TspRI	CASTG	1 cut(s)	478
VpaK11BI	GGWCC	4 cut(s)	48, 689, 744, 976
XapI	RAATTY	1 cut(s)	379
XceI	RCATGY	1 cut(s)	465
XmaI	CCCGGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.