Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011222

Physical Location & Seq

Genomic Coordinates Forward (+)

14673061 .. 14676574

Gene Structure 3514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1045900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGGTGACTGGCTGGCGAAGGGCCTTCTGCACATCCATCACCAAAGACAGAGACTCAAAAGTGCTTATTGAGAAGCAGCAGCAACATCACAACAACGGCAATCAGCAGAGCCCCAGAATCAACTCCAAATTTGGATTCTTTTCCAACCCTTCAACCACACGCCTCCAATCTCAATCCCAAGCTCAATCTGTAGTCTCCAGCCCCGCCCTCCGCTGCCGAACCACCGCCACCAACACCCCCACTTCCTCACTTCCCAACTCCCCAAAACTCCAATGCAACGTCTCCTCCGCCGCCACAACCCCCCAAAAAGCCAGCAGCTACAGCCCTAGACTGCTTTTTCACTTCCAGCGCTCCAACCCATCGTCCCCAAAATCCCCCTCCAGCTTCTCCCTCCTCAAGTCCACCCTACGCCTCTCCAAAAGTAGATGCGGAATCTGCTTACATAGTGTGAAAAGCGGTCAGGGCACCGCCATTTTTACAGCGGAGTGCTCCCATTCCTTCCACTTCGCCTGCATCTCCGCCCACGTCAAGAAGAACAGCCTCCTCCTGTGCCCCGTCTGCAGTACCGCCTGGAAGGAGCTGCCGTTAATCTCCGTCCACAAACCGCCACCAATTTCATCGCCCAAGAAGCCCAGAGACGTCAAGACTAAGCCTCTGAGAGTTTACAATGACGATGAGCCGCTTTCGTCCCCAACCTCCGGTTCCCGCTTCAACCCAATACCAGAAGAGAACGACGACGAAAACGACGCCGTTGAATTCCAGGGGTTCTTTGTGAATACGAGTTCCAAGCCTCAATCGCGTTTTGCCTCGGCTGACCGGAATGTTAAGAATGTGGAGGTCAGTCTGTTGCCGGAATCGGCGGTTGTGGCGGTCGGGAGGAGTTATGAGACACACGCGGTGGTTCTGAAGCTCAAGGCACCGCAAACCAATGAGTCGAAGACGGCGTCTTTAGAGCGTCGAGCTCCGATTGACTTGGTGACGGTGGTGGACGTGAGCGTAAGTGCGAGCAATGCGAAGATTCAGATGATGAAGCGCGCGATGCGACTTGTCGTTTCGTCGCTCCGTGACACTGACCGTCTCTCAATCGTCGCGTATTCCTCCACTTCGAAGAGGCTGCTACCACTACGGCGAATGACCTCTGCTGGTCGTCGTTCGGCGCGTCGGATTGTGGACGCGCTCTGCGGCGTCGGCCAGGGGATGTGCGTTAACGACGCGCTCAAGAAGGCCGCGAAGGTGGTCCAAGACCGGCGCGAGAAAAATGCCGTCGCGAGTATCATGCTTCTATCGGATGCCGTACAACCAGAAGCCAATCATAAGCGATCTTCCCCCGTCGTGTCCTCCACGCGCCTCCCTCACCTCGACATCCCCGTCCACACCGTCGCACTCGGGGATGGTTGCGACGACGCGCTAGCGAAGTGCGTCGGAGGCTTACTAAGCGTCGTGGTCCAGGATCTCAGTCTCCAACTTGGTGTCGTTTCGGGTTCAAGCCCGGCCGAGATCGCCGCTGTGTATTCACTCACGGGTCGGCCCGCTGCTCTAGGATCCGGGTCGATCCGACTCGGAGATCTCTACGCCGGAGAGGAGCGAGAGTTGTTAGTCGAACTGAAAGTAGCGGTTTCCGCCACCGGCGGGCCCCACTCATCCCAGAACGTGATGTCCGTGAGGTCCACACACAGGGACCCGTCGTCCAATGAGCTTGTGTATTCAAAAGAGCGGGTCCTCCTCGTACCTCGATCACAGACCGTCCGATCCTCATCGTCGAACCCAAACATCGAGCGGCTAAGGAACCTCCACGTGGCGGCAAGAGCCGTGGCGGAGTCGCGGAGGTTCGTGGAGAGGAGCAGCGACTTCTCGGGCGCGTACCACCTGCTATCGTCGGCGCGAACGTTGCTCGTGCAGTCGAGCTCGGCATCGGCGGAGGAGTTCCTCCGCGGCTTGGAGGGGGAGATGGCGGAGCTTCAGCGGCGGCGGCAGATTCAGCTGCTAGCGGAGGTTGAGGCGAAGCAAAGCAAGAAGGGATGCAGTAATGGACAGGCGGAGGAGAAGCAAGAGCCGCTAACGCCGACGTCGGCTTGGCGCGCGGCTGAGAAATTGGCTAAGGTGGCTACGATGAGGAAGTCGATGAACAGAGTAAGCGACTTACACGGCTTCGAAAATGCCAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010197 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022622 GO:0030054 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048229 GO:0048284 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VWA VWA_2 VWA_3 zf-RING_11

Protein Analysis

723

Amino Acids

78.5

Weight (kDa)

9.88

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	142 - 187	1.1e-07	Ring finger domain
zf-RING_11	PF17123	143 - 172	6.2e-08	RING-like zinc finger
VWA	PF00092	324 - 471	4.1e-13	von Willebrand factor type A domain
VWA_3	PF13768	324 - 471	3.6e-12	von Willebrand factor type A domain
VWA_2	PF13519	325 - 431	2.5e-16	von Willebrand factor type A domain
WAV3_C	PF25243	589 - 660	1.9e-31	E3 ubiquitin-protein ligase WAV3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22680 AT4G37890 AT4G37890
fragaria_vesca	FvH4_1g18891
malus_domestica	MD01G1045900.v1.1 MD15G1305700.v1.1
prunus_persica	Prupe.6G210600_v2.0.a1
pyrus_communis	pycom01g07210 pycom15g26960
rosa_chinensis	RchiOBHm_Chr2g0109851
rosa_laevigata	RLG00000017767
rosa_multiflora	Rmu_co8072298.1_g000001 Rmu_co8290675.1_g000001 Rmu_sc0008299.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133910
rosa_samantha	Rh2AG215300 Rh2BG225400 Rh2CG217200 Rh2DG220800
rosa_wichuraiana	Rw2G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1875
AasI	GACNNNNNNGTC	1 cut(s)	1367
AatII	GACGTC	2 cut(s)	642, 2069
Acc36I	ACCTGC	1 cut(s)	1875
AccB1I	GGYRCC	2 cut(s)	464, 916
AccBSI	CCGCTC	2 cut(s)	1714, 1777
AclI	AACGTT	1 cut(s)	1886
AclWI	GGATC	5 cut(s)	1458, 1536, 1546, 1549, 1743
AcoI	YGGCCR	2 cut(s)	1189, 1491
AcsI	RAATTY	2 cut(s)	128, 755
AcuI	CTGAAG	2 cut(s)	926, 1943
AcvI	CACGTG	1 cut(s)	1795
AcyI	GRCGYC	5 cut(s)	639, 747, 944, 1185, 2066
AdeI	CACNNNGTG	1 cut(s)	898
AfaI	GTAC	4 cut(s)	565, 1296, 1728, 1862
AfeI	AGCGCT	1 cut(s)	350
AfiI	CCNNNNNNNGG	6 cut(s)	698, 1629, 1674, 1795, 1798, 1936
AgsI	TTSAA	5 cut(s)	153, 712, 755, 1485, 1707
AhdI	GACNNNNNGTC	1 cut(s)	1684
AjiI	CACGTC	2 cut(s)	526, 991
AjnI	CCWGG	4 cut(s)	569, 759, 1191, 1446
AjuI	GAANNNNNNNTTGG	4 cut(s)	119, 151, 685, 717
AloI	GAACNNNNNNTCC	2 cut(s)	1640, 1672
Alw21I	GWGCWC	3 cut(s)	491, 964, 1907
Alw26I	GTCTC	7 cut(s)	45, 199, 286, 630, 881, 1082, 1463
AlwI	GGATC	5 cut(s)	1458, 1536, 1546, 1549, 1743
Ama87I	CYCGRG	2 cut(s)	1385, 1852
Aor51HI	AGCGCT	1 cut(s)	350
AoxI	GGCC	6 cut(s)	21, 1189, 1224, 1491, 1526, 1631
ApaI	GGGCCC	1 cut(s)	1635
ApeKI	GCWGC	9 cut(s)	76, 79, 213, 315, 580, 1114, 1532, 1842, 1981
ApoI	RAATTY	2 cut(s)	128, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	929, 961
AspS9I	GGNCC	9 cut(s)	21, 1237, 1444, 1527, 1631, 1632, 1665, 1678, 1717
AsuC2I	CCSGG	2 cut(s)	1490, 1546
AsuHPI	GGTGA	4 cut(s)	16, 31, 988, 1346
AsuII	TTCGAA	2 cut(s)	1106, 2151
AsuNHI	GCTAGC	2 cut(s)	1408, 1984
AvaI	CYCGRG	2 cut(s)	1385, 1852
AvaII	GGWCC	5 cut(s)	1237, 1444, 1665, 1678, 1717
BaeGI	GKGCMC	3 cut(s)	467, 554, 1635
BamHI	GGATCC	1 cut(s)	1541
BanI	GGYRCC	2 cut(s)	464, 916
BanII	GRGCYC	4 cut(s)	113, 964, 1635, 1907
BauI	CACGAG	1 cut(s)	1892
BbrPI	CACGTG	1 cut(s)	1795
BbsI	GAAGAC	1 cut(s)	944
Bbv12I	GWGCWC	3 cut(s)	491, 964, 1907
BbvI	GCAGC	9 cut(s)	88, 91, 200, 327, 567, 1101, 1519, 1854, 1968
BccI	CCATC	4 cut(s)	44, 367, 1385, 1942
BceAI	ACGGC	9 cut(s)	112, 568, 734, 957, 1142, 1247, 1277, 1793, 2161
BcgI	CGANNNNNNTGC	6 cut(s)	1096, 1130, 1241, 1258, 1275, 1292
BciT130I	CCWGG	4 cut(s)	571, 761, 1193, 1448
BcnI	CCSGG	2 cut(s)	1490, 1546
BcoDI	GTCTC	7 cut(s)	45, 199, 286, 630, 881, 1082, 1463
BfaI	CTAG	4 cut(s)	327, 1409, 1538, 1985
BfmI	CTRYAG	3 cut(s)	189, 319, 559
BfoI	RGCGCY	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	1875
BglII	AGATCT	1 cut(s)	1564
Bme1390I	CCNGG	6 cut(s)	571, 761, 1193, 1448, 1490, 1546
Bme18I	GGWCC	5 cut(s)	1237, 1444, 1665, 1678, 1717
BmeRI	GACNNNNNGTC	1 cut(s)	1684
BmeT110I	CYCGRG	2 cut(s)	1385, 1852
BmgBI	CACGTC	2 cut(s)	526, 991
BmgT120I	GGNCC	9 cut(s)	21, 1237, 1444, 1527, 1631, 1632, 1665, 1678, 1717
BmrFI	CCNGG	6 cut(s)	571, 761, 1193, 1448, 1490, 1546
BmsI	GCATC	6 cut(s)	416, 522, 1029, 1279, 1919, 2009
BmtI	GCTAGC	2 cut(s)	1412, 1988
BpiI	GAAGAC	1 cut(s)	944
BpmI	CTGGAG	2 cut(s)	181, 364
Bpu10I	CCTNAGC	2 cut(s)	1781, 2097
Bpu14I	TTCGAA	2 cut(s)	1106, 2151
BpuEI	CTTGAG	3 cut(s)	380, 896, 1202
BpuMI	CCSGG	2 cut(s)	1490, 1546
BsaAI	YACGTR	1 cut(s)	1795
BsaBI	GATNNNNATC	1 cut(s)	1753
BsaHI	GRCGYC	5 cut(s)	639, 747, 944, 1185, 2066
BsaJI	CCNNGG	5 cut(s)	760, 807, 1192, 1809, 1930
BsaWI	WCCGGW	2 cut(s)	698, 816
BsaXI	ACNNNNNCTCC	6 cut(s)	269, 299, 569, 599, 1574, 1604
Bsc4I	CCNNNNNNNGG	6 cut(s)	698, 1629, 1674, 1795, 1798, 1936
Bse118I	RCCGGY	2 cut(s)	1245, 1625
Bse1I	ACTGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	1015
Bse8I	GATNNNNATC	1 cut(s)	1753
BseBI	CCWGG	4 cut(s)	571, 761, 1193, 1448
BseDI	CCNNGG	5 cut(s)	760, 807, 1192, 1809, 1930
BseGI	GGATG	7 cut(s)	32, 1203, 1294, 1362, 1396, 1640, 2024
BseJI	GATNNNNATC	1 cut(s)	1753
BseLI	CCNNNNNNNGG	6 cut(s)	698, 1629, 1674, 1795, 1798, 1936
BseMI	GCAATG	1 cut(s)	1015
BseMII	CTCAG	3 cut(s)	647, 1468, 2076
BseNI	ACTGG	1 cut(s)	13
BsePI	GCGCGC	2 cut(s)	1033, 2077
BseRI	GAGGAG	9 cut(s)	274, 383, 533, 892, 1595, 1712, 1852, 1934, 2054
BseSI	GKGCMC	3 cut(s)	467, 554, 1635
BseX3I	CGGCCG	1 cut(s)	1491
BseXI	GCAGC	9 cut(s)	88, 91, 200, 327, 567, 1101, 1519, 1854, 1968
BsgI	GTGCAG	2 cut(s)	13, 1916
Bsh1285I	CGRYCG	2 cut(s)	873, 1494
BshFI	GGCC	6 cut(s)	23, 1191, 1226, 1493, 1528, 1633
BshNI	GGYRCC	2 cut(s)	464, 916
BsiEI	CGRYCG	2 cut(s)	873, 1494
BsiHKAI	GWGCWC	3 cut(s)	491, 964, 1907
BsiHKCI	CYCGRG	2 cut(s)	1385, 1852
BsiSI	CCGG	8 cut(s)	699, 817, 851, 1246, 1490, 1545, 1575, 1626
BslFI	GGGAC	3 cut(s)	349, 673, 1691
BslI	CCNNNNNNNGG	6 cut(s)	698, 1629, 1674, 1795, 1798, 1936
BsmAI	GTCTC	7 cut(s)	45, 199, 286, 630, 881, 1082, 1463
BsmBI	CGTCTC	3 cut(s)	286, 630, 1082
BsmFI	GGGAC	3 cut(s)	349, 673, 1691
BsnI	GGCC	6 cut(s)	23, 1191, 1226, 1493, 1528, 1633
BsoBI	CYCGRG	2 cut(s)	1385, 1852
Bsp119I	TTCGAA	2 cut(s)	1106, 2151
Bsp120I	GGGCCC	1 cut(s)	1631
Bsp1286I	GDGCHC	7 cut(s)	113, 467, 491, 554, 964, 1635, 1907
Bsp143I	GATC	8 cut(s)	1319, 1450, 1497, 1541, 1551, 1564, 1733, 1748
Bsp68I	TCGCGA	1 cut(s)	1268
BspANI	GGCC	6 cut(s)	23, 1191, 1226, 1493, 1528, 1633
BspCNI	CTCAG	3 cut(s)	648, 1467, 2077
BspMAI	CTGCAG	1 cut(s)	563
BspMI	ACCTGC	1 cut(s)	1875
BspOI	GCTAGC	2 cut(s)	1412, 1988
BspPI	GGATC	5 cut(s)	1458, 1536, 1546, 1549, 1743
BspT104I	TTCGAA	2 cut(s)	1106, 2151
BspT107I	GGYRCC	2 cut(s)	464, 916
BsrBI	CCGCTC	2 cut(s)	1714, 1777
BsrDI	GCAATG	1 cut(s)	1015
BsrFI	RCCGGY	2 cut(s)	1245, 1625
BsrI	ACTGG	1 cut(s)	13
BssAI	RCCGGY	2 cut(s)	1245, 1625
BssECI	CCNNGG	5 cut(s)	760, 807, 1192, 1809, 1930
BssHII	GCGCGC	2 cut(s)	1033, 2077
BssMI	GATC	8 cut(s)	1319, 1450, 1497, 1541, 1551, 1564, 1733, 1748
BssNI	GRCGYC	5 cut(s)	639, 747, 944, 1185, 2066
BssSI	CACGAG	1 cut(s)	1892
Bst2BI	CACGAG	1 cut(s)	1892
Bst2UI	CCWGG	4 cut(s)	571, 761, 1193, 1448
Bst4CI	ACNGT	4 cut(s)	982, 1076, 1378, 1744
Bst6I	CTCTTC	2 cut(s)	720, 1103
BstACI	GRCGYC	5 cut(s)	639, 747, 944, 1185, 2066
BstBAI	YACGTR	1 cut(s)	1795
BstBI	TTCGAA	2 cut(s)	1106, 2151
BstDEI	CTNAG	7 cut(s)	648, 656, 1433, 1454, 1781, 2085, 2097
BstDSI	CCRYGG	2 cut(s)	1809, 1930
BstF5I	GGATG	7 cut(s)	32, 1203, 1294, 1362, 1396, 1640, 2024
BstH2I	RGCGCY	1 cut(s)	352
BstKTI	GATC	8 cut(s)	1322, 1453, 1500, 1544, 1554, 1567, 1736, 1751
BstMAI	GTCTC	7 cut(s)	45, 199, 286, 630, 881, 1082, 1463
BstMBI	GATC	8 cut(s)	1319, 1450, 1497, 1541, 1551, 1564, 1733, 1748
BstMCI	CGRYCG	2 cut(s)	873, 1494
BstNI	CCWGG	4 cut(s)	571, 761, 1193, 1448
BstSCI	CCNGG	6 cut(s)	569, 759, 1191, 1446, 1488, 1544
BstSFI	CTRYAG	3 cut(s)	189, 319, 559
BstSLI	GKGCMC	3 cut(s)	467, 554, 1635
BstV1I	GCAGC	9 cut(s)	88, 91, 200, 327, 567, 1101, 1519, 1854, 1968
BstV2I	GAAGAC	1 cut(s)	944
BstX2I	RGATCY	3 cut(s)	1450, 1541, 1564
BstYI	RGATCY	3 cut(s)	1450, 1541, 1564
BstZI	CGGCCG	1 cut(s)	1491
BsuRI	GGCC	6 cut(s)	23, 1191, 1226, 1493, 1528, 1633
BtgI	CCRYGG	2 cut(s)	1809, 1930
BtgZI	GCGATG	2 cut(s)	603, 1052
BtrI	CACGTC	2 cut(s)	526, 991
BtsCI	GGATG	7 cut(s)	32, 1203, 1294, 1362, 1396, 1640, 2024
BtsIMutI	CAGTG	1 cut(s)	1068
BtuMI	TCGCGA	1 cut(s)	1268
BveI	ACCTGC	1 cut(s)	1875
Cfr10I	RCCGGY	2 cut(s)	1245, 1625
Cfr13I	GGNCC	9 cut(s)	21, 1237, 1444, 1527, 1631, 1632, 1665, 1678, 1717
Cfr42I	CCGCGG	1 cut(s)	1933
Csp6I	GTAC	4 cut(s)	564, 1295, 1727, 1861
CspCI	CAANNNNNGTGG	2 cut(s)	1791, 1826
CviAII	CATG	1 cut(s)	1276
CviQI	GTAC	4 cut(s)	564, 1295, 1727, 1861
DdeI	CTNAG	7 cut(s)	648, 656, 1433, 1454, 1781, 2085, 2097
DpnI	GATC	8 cut(s)	1321, 1452, 1499, 1543, 1553, 1566, 1735, 1750
DpnII	GATC	8 cut(s)	1319, 1450, 1497, 1541, 1551, 1564, 1733, 1748
DraIII	CACNNNGTG	1 cut(s)	898
DrdI	GACNNNNNNGTC	1 cut(s)	1367
DriI	GACNNNNNGTC	1 cut(s)	1684
DseDI	GACNNNNNNGTC	1 cut(s)	1367
EaeI	YGGCCR	2 cut(s)	1189, 1491
EagI	CGGCCG	1 cut(s)	1491
Eam1104I	CTCTTC	2 cut(s)	720, 1103
Eam1105I	GACNNNNNGTC	1 cut(s)	1684
EarI	CTCTTC	2 cut(s)	720, 1103
EciI	GGCGGA	7 cut(s)	277, 508, 1609, 1829, 1931, 1967, 2051
Ecl136II	GAGCTC	2 cut(s)	962, 1905
EclXI	CGGCCG	1 cut(s)	1491
Eco24I	GRGCYC	4 cut(s)	113, 964, 1635, 1907
Eco47I	GGWCC	5 cut(s)	1237, 1444, 1665, 1678, 1717
Eco47III	AGCGCT	1 cut(s)	350
Eco52I	CGGCCG	1 cut(s)	1491
Eco53kI	GAGCTC	2 cut(s)	962, 1905
Eco57I	CTGAAG	2 cut(s)	926, 1943
Eco72I	CACGTG	1 cut(s)	1795
Eco88I	CYCGRG	2 cut(s)	1385, 1852
EcoICRI	GAGCTC	2 cut(s)	962, 1905
EcoO109I	RGGNCCY	4 cut(s)	21, 1632, 1678, 1717
EcoRI	GAATTC	1 cut(s)	755
EcoRII	CCWGG	4 cut(s)	569, 759, 1191, 1446
EcoT38I	GRGCYC	4 cut(s)	113, 964, 1635, 1907
Esp3I	CGTCTC	3 cut(s)	286, 630, 1082
FaeI	CATG	1 cut(s)	1279
FaiI	YATR	4 cut(s)	444, 885, 1277, 1314
FaqI	GGGAC	3 cut(s)	349, 673, 1691
FatI	CATG	1 cut(s)	1275
FauI	CCCGC	5 cut(s)	211, 713, 1537, 1622, 1707
FokI	GGATG	7 cut(s)	19, 1210, 1301, 1349, 1403, 1627, 2031
FriOI	GRGCYC	4 cut(s)	113, 964, 1635, 1907
FspBI	CTAG	4 cut(s)	327, 1409, 1538, 1985
GsuI	CTGGAG	2 cut(s)	181, 364
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	6 cut(s)	23, 1191, 1226, 1493, 1528, 1633
HapII	CCGG	8 cut(s)	699, 817, 851, 1246, 1490, 1545, 1575, 1626
Hin1I	GRCGYC	5 cut(s)	639, 747, 944, 1185, 2066
Hin1II	CATG	1 cut(s)	1279
HincII	GTYRAC	1 cut(s)	1207
HindII	GTYRAC	1 cut(s)	1207
HpaI	GTTAAC	1 cut(s)	1207
HpaII	CCGG	8 cut(s)	699, 817, 851, 1246, 1490, 1545, 1575, 1626
HphI	GGTGA	4 cut(s)	16, 31, 988, 1346
Hpy166II	GTNNAC	8 cut(s)	402, 598, 664, 988, 1171, 1207, 1372, 1668
Hpy188III	TCNNGA	5 cut(s)	529, 643, 874, 1219, 1267
Hpy8I	GTNNAC	8 cut(s)	402, 598, 664, 988, 1171, 1207, 1372, 1668
HpyAV	CCTTC	8 cut(s)	12, 34, 159, 508, 568, 1216, 1225, 2008
HpyCH4III	ACNGT	4 cut(s)	982, 1076, 1378, 1744
HpyCH4IV	ACGT	8 cut(s)	279, 525, 639, 990, 1650, 1794, 1886, 2066
HpyCH4V	TGCA	6 cut(s)	30, 276, 513, 561, 1897, 2022
HpyF3I	CTNAG	7 cut(s)	648, 656, 1433, 1454, 1781, 2085, 2097
HpySE526I	ACGT	8 cut(s)	279, 525, 639, 990, 1650, 1794, 1886, 2066
Hsp92I	GRCGYC	5 cut(s)	639, 747, 944, 1185, 2066
Hsp92II	CATG	1 cut(s)	1279
KflI	GGGWCCC	1 cut(s)	1678
KspAI	GTTAAC	1 cut(s)	1207
KspI	CCGCGG	1 cut(s)	1933
Kzo9I	GATC	8 cut(s)	1319, 1450, 1497, 1541, 1551, 1564, 1733, 1748
LmnI	GCTCC	8 cut(s)	356, 494, 577, 967, 1065, 1582, 1839, 1954
Lsp1109I	GCAGC	9 cut(s)	88, 91, 200, 327, 567, 1101, 1519, 1854, 1968
LweI	GCATC	6 cut(s)	416, 522, 1029, 1279, 1919, 2009
MaeI	CTAG	4 cut(s)	327, 1409, 1538, 1985
MaeII	ACGT	8 cut(s)	279, 525, 639, 990, 1650, 1794, 1886, 2066
MaeIII	GTNAC	3 cut(s)	4, 976, 1064
MalI	GATC	8 cut(s)	1321, 1452, 1499, 1543, 1553, 1566, 1735, 1750
MbiI	CCGCTC	2 cut(s)	1714, 1777
MboI	GATC	8 cut(s)	1319, 1450, 1497, 1541, 1551, 1564, 1733, 1748
MboII	GAAGA	6 cut(s)	544, 737, 949, 1027, 1120, 1314
MflI	RGATCY	3 cut(s)	1450, 1541, 1564
MhlI	GDGCHC	7 cut(s)	113, 467, 491, 554, 964, 1635, 1907
MluCI	AATT	4 cut(s)	128, 612, 755, 2090
MlyI	GAGTC	4 cut(s)	47, 941, 1551, 1826
MmeI	TCCRAC	6 cut(s)	168, 378, 1142, 1402, 1486, 1579
MseI	TTAA	3 cut(s)	587, 825, 1206
MspA1I	CMGCKG	7 cut(s)	213, 482, 1505, 1532, 1932, 1963, 1981
MspI	CCGG	8 cut(s)	699, 817, 851, 1246, 1490, 1545, 1575, 1626
MspR9I	CCNGG	6 cut(s)	571, 761, 1193, 1448, 1490, 1546
MvaI	CCWGG	4 cut(s)	571, 761, 1193, 1448
NciI	CCSGG	2 cut(s)	1490, 1546
NdeII	GATC	8 cut(s)	1319, 1450, 1497, 1541, 1551, 1564, 1733, 1748
NheI	GCTAGC	2 cut(s)	1408, 1984
NlaIII	CATG	1 cut(s)	1279
NmeAIII	GCCGAG	3 cut(s)	788, 1519, 1886
NmuCI	GTSAC	3 cut(s)	4, 976, 1064
NruI	TCGCGA	1 cut(s)	1268
NspV	TTCGAA	2 cut(s)	1106, 2151
PaqCI	CACCTGC	1 cut(s)	1875
PauI	GCGCGC	2 cut(s)	1033, 2077
PcsI	WCGNNNNNNNCGW	6 cut(s)	741, 941, 1156, 1365, 1656, 1883
PfeI	GAWTC	6 cut(s)	117, 135, 432, 854, 1018, 1975
PflFI	GACNNNGTC	1 cut(s)	943
PfoI	TCCNGGA	1 cut(s)	1446
PleI	GAGTC	4 cut(s)	47, 940, 1551, 1825
PmaCI	CACGTG	1 cut(s)	1795
PmlI	CACGTG	1 cut(s)	1795
PpsI	GAGTC	4 cut(s)	47, 940, 1551, 1825
Ppu21I	YACGTR	1 cut(s)	1795
PpuMI	RGGWCCY	2 cut(s)	1678, 1717
Psp124BI	GAGCTC	2 cut(s)	964, 1907
Psp1406I	AACGTT	1 cut(s)	1886
Psp5II	RGGWCCY	2 cut(s)	1678, 1717
Psp6I	CCWGG	4 cut(s)	569, 759, 1191, 1446
PspCI	CACGTG	1 cut(s)	1795
PspGI	CCWGG	4 cut(s)	569, 759, 1191, 1446
PspOMI	GGGCCC	1 cut(s)	1631
PspPI	GGNCC	9 cut(s)	21, 1237, 1444, 1527, 1631, 1632, 1665, 1678, 1717
PspPPI	RGGWCCY	2 cut(s)	1678, 1717
PstI	CTGCAG	1 cut(s)	563
PsuI	RGATCY	3 cut(s)	1450, 1541, 1564
PsyI	GACNNNGTC	1 cut(s)	943
PteI	GCGCGC	2 cut(s)	1033, 2077
PvuII	CAGCTG	1 cut(s)	1981
RruI	TCGCGA	1 cut(s)	1268
RsaI	GTAC	4 cut(s)	565, 1296, 1728, 1862
RsaNI	GTAC	4 cut(s)	564, 1295, 1727, 1861
SacI	GAGCTC	2 cut(s)	964, 1907
SacII	CCGCGG	1 cut(s)	1933
SaqAI	TTAA	3 cut(s)	587, 825, 1206
Sau3AI	GATC	8 cut(s)	1319, 1450, 1497, 1541, 1551, 1564, 1733, 1748
Sau96I	GGNCC	9 cut(s)	21, 1237, 1444, 1527, 1631, 1632, 1665, 1678, 1717
SchI	GAGTC	4 cut(s)	47, 941, 1551, 1826
ScrFI	CCNGG	6 cut(s)	571, 761, 1193, 1448, 1490, 1546
SduI	GDGCHC	7 cut(s)	113, 467, 491, 554, 964, 1635, 1907
SfaNI	GCATC	6 cut(s)	416, 522, 1029, 1279, 1919, 2009
SfcI	CTRYAG	3 cut(s)	189, 319, 559
Sfr303I	CCGCGG	1 cut(s)	1933
SfuI	TTCGAA	2 cut(s)	1106, 2151
SgrAI	CRCCGGYG	1 cut(s)	1625
SgrBI	CCGCGG	1 cut(s)	1933
SinI	GGWCC	5 cut(s)	1237, 1444, 1665, 1678, 1717
SmlI	CTYRAG	3 cut(s)	395, 911, 1217
SmoI	CTYRAG	3 cut(s)	395, 911, 1217
Sse9I	AATT	4 cut(s)	128, 612, 755, 2090
SspMI	CTAG	4 cut(s)	327, 1409, 1538, 1985
SstI	GAGCTC	2 cut(s)	964, 1907
StyD4I	CCNGG	6 cut(s)	569, 759, 1191, 1446, 1488, 1544
TaaI	ACNGT	4 cut(s)	982, 1076, 1378, 1744
TaiI	ACGT	8 cut(s)	282, 528, 642, 993, 1653, 1797, 1889, 2069
TasI	AATT	4 cut(s)	128, 612, 755, 2090
TfiI	GAWTC	6 cut(s)	117, 135, 432, 854, 1018, 1975
Tru1I	TTAA	3 cut(s)	587, 825, 1206
Tru9I	TTAA	3 cut(s)	587, 825, 1206
TscAI	CASTG	1 cut(s)	1075
TseFI	GTSAC	3 cut(s)	4, 976, 1064
TseI	GCWGC	9 cut(s)	76, 79, 213, 315, 580, 1114, 1532, 1842, 1981
Tsp45I	GTSAC	3 cut(s)	4, 976, 1064
TspDTI	ATGAA	3 cut(s)	606, 1043, 2138
TspGWI	ACGGA	3 cut(s)	583, 1052, 1648
TspRI	CASTG	1 cut(s)	1075
Tth111I	GACNNNGTC	1 cut(s)	943
VpaK11BI	GGWCC	5 cut(s)	1237, 1444, 1665, 1678, 1717
XapI	RAATTY	2 cut(s)	128, 755
XspI	CTAG	4 cut(s)	327, 1409, 1538, 1985
ZraI	GACGTC	2 cut(s)	640, 2067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.