Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011222

Physical Location & Seq

Genomic Coordinates Reverse (-)

20928360 .. 20930625

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

ATGGTGATTGGGTGGAGAAGGGCCTTCTGCACATCTATGCCTAAAGACAGACACACCAAAGTTGTAACAGAGAAGCAGCAGCAACAATGTGAAAACACCAACAGCAACACCAACAATAACCAAAGCCCCAAAATCATCTCCAAATTCGGTTTCTTCTCATCTTCCTCCTCCTCAAACCCATCCACGCCTCGCCTTCAATCCCAGCCGGTCTCGACTCCAAGCCTCCGCTGCCGAACCACCGCGGCCACAGCACCCACCACCCCCAATTCTTCCCTCCCCAACAGCCCAAAACTCCAATGCAACGTCCCTCCCACCACCACCACAGCCCCAAAAAAACCGACCTACAGCCCCCGACTTTTCCACCGATCCAACCCCTCCTCCCCGAAATCGCCTTCCAGCTTCTCCCTCCTCAAATCCACACTCCGCCTCAACAAAAGTAGATGCGGAATCTGCTTGCAGAGCGTGAAAAGTGGTCAAGGTACGGCCATTTTCACAGCCGAGTGCTCCCACTCCTTTCACTATCCTTGCGTCGCCACCCATGTCAAGAAGCAACCTCTCATGCTCTGCCCCGTCTGCAACGCCACCTGGAAAGAGCTGCCTCTGCTCGAAACTCTCACTCCTCACACCAATACTAAGCCGGAGTCGAAGCTCATGAGCGACGTCAAGACCAAACCCTTGAGGGTTTACAACGACGACGAGCCGCTCATGTCGCCGACGTCCGGCGCCAGGTTCAATCCGATTCCGGAGTCCGACGAAAACGAGGAGGAAAACGACGCCGTTGAGTTCCAGGGCTTCTTTGTCAATCCTGATAGAAATAATGTCTGTTCAGGGAATCGGAAGAGTGTCGAGTTTAGTTTGCTGCCTGAATCGGCGGTGGTGGCGGTTGCGAGGAGCTACGAGACTTACGCCGTCGTGTTGAAAGTCAAAGCTCCGCAGCAGCTTGTGGAAGGTAGAACGACGTCGTCTCGAAGGGCGCCGATTGACTTGGTGACGGTGGTCGACGTCAGCGCCAATACCAGCCGCGCCAGGATTCAGGCCACCAAACGCGCGTTGCGGTTGATAATTTCTTCTCTCTCCGACGCCGACAGGCTCTCCCTCGTGGCGTTCTCGTCCACCTCCAAGAGGCTGCTGCCGTTACGGAGGATGACGTCGGCCGGCCGGAGATCGGCGCGTCGGATAGTCGATGCCCTCTGCGGCGTTGGCCAGGGTATGTGTGTCAACGACGCGCTCAAGAAGGCGGCGAAGGTGTTGCAAGACCGCCGGGAGAGGAACCCCGTCGCTAGCATTATGCTGCTCTCGGACGGCGGCGTTTCCGCCGATCAGAAGCGCTCCTCCCCGGTTGTGTCCTCCACGCGCTTCCCCCACCTCGACATCCCCGTCCACACCGTCGGATTAACCGAGGCTACCGACGACGCGTTCGCCAAGTGCGTGGGGGGTTTGCTAAGCGTGGTGGTGAAAGACGTCAAGCTCCAGCTCAGCGTCGTAACCGGTTCAGCCAACGCCGAAATCGCGGCGGTTTATTCTCTCACGGGCCGGCCCACGGCTCTCGGATCCGGTTCGATCCGGCTCGGCGACCTCTACGCCGGAGAAGAGCGAGAGCTGCTCGTCGAGTTGAAAGTCCCGGTCAATTCCGGCGGGTCCCATACCCAAAACGCGATGATGTCCGTACGGTCCACCTACAGAGACCCGTCGTCGAATGAGCTCGTATTTTCCACAGAGCGGGCTCTCCTCGTACCGCGCTCGCAAGCCGTCCGATCGTCTTCTTCCTCTTCCTCCAACCCCAACATCCAACGGCTGCGAAATCTCCACGTCACGGCTCGAGCCTTGGCCGAGTCGCGCCGGTTCTTGGAGCGAAACGACTTCTCAGGCGCCTATCACTTGCTGACTTCAGCTCGGGCTCTGCTGCTCCAGTCGAGCTCGGCTTCGGTGGAGGAGTTCCTGCGCGGCTTGGAGGCTGAGCTGGCGGAGCTGCACCGTGGGAGGCAGCACCAGAGTGTGGCCCAGAGGCAGCGAGGGAACGGACACGTAGAGGAGAAGCCGGAGCCGCTGACGCCGACCTCGGCTTGGCGCGCCGCCGAGAGATTGGCTAAGGTGGCTATAATGAGGAAGTCAATGAACAGAGTCAGCGACTTACACGGCTTCGAAAACGCCAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010197 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022622 GO:0030054 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048229 GO:0048284 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VWA VWA_2 VWA_3 zf-RING_11

Protein Analysis

720

Amino Acids

78.57

Weight (kDa)

9.89

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	147 - 193	9.5e-08	Ring finger domain
zf-RING_11	PF17123	148 - 177	4.9e-09	RING-like zinc finger
VWA	PF00092	328 - 472	2.4e-13	von Willebrand factor type A domain
VWA_3	PF13768	328 - 470	6.6e-12	von Willebrand factor type A domain
VWA_2	PF13519	329 - 435	4.4e-16	von Willebrand factor type A domain
WAV3_C	PF25243	594 - 667	6e-34	E3 ubiquitin-protein ligase WAV3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22680 AT4G37890 AT4G37890
fragaria_vesca	FvH4_1g18891
malus_domestica	MD01G1045900.v1.1 MD15G1305700.v1.1
prunus_persica	Prupe.6G210600_v2.0.a1
pyrus_communis	pycom01g07210 pycom15g26960
rosa_chinensis	RchiOBHm_Chr2g0109851
rosa_laevigata	RLG00000017767
rosa_multiflora	Rmu_co8072298.1_g000001 Rmu_co8290675.1_g000001 Rmu_sc0008299.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133910
rosa_samantha	Rh2AG215300 Rh2BG225400 Rh2CG217200 Rh2DG220800
rosa_wichuraiana	Rw2G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1376
AatII	GACGTC	6 cut(s)	663, 719, 962, 1005, 1151, 1464
AccB1I	GGYRCC	3 cut(s)	722, 973, 1868
AccB7I	CCANNNNNTGG	1 cut(s)	1996
AccBSI	CCGCTC	2 cut(s)	703, 1720
AccI	GTMKAC	1 cut(s)	999
AccIII	TCCGGA	1 cut(s)	742
AclWI	GGATC	4 cut(s)	360, 1545, 1555, 1558
AcoI	YGGCCR	6 cut(s)	243, 483, 1152, 1156, 1201, 1827
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	1872
AfaI	GTAC	3 cut(s)	481, 1668, 1734
AfeI	AGCGCT	1 cut(s)	1328
AflIII	ACRYGT	2 cut(s)	1413, 2023
AgeI	ACCGGT	1 cut(s)	1487
AgsI	TTSAA	4 cut(s)	197, 733, 919, 1615
AhdI	GACNNNNNGTC	1 cut(s)	1690
AjiI	CACGTC	1 cut(s)	1810
AjnI	CCWGG	5 cut(s)	584, 725, 786, 1025, 1203
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AleI	CACNNNNGTG	1 cut(s)	1992
Alw21I	GWGCWC	3 cut(s)	506, 1704, 1919
Alw26I	GTCTC	4 cut(s)	214, 893, 969, 1677
AlwI	GGATC	4 cut(s)	360, 1545, 1555, 1558
Ama87I	CYCGRG	2 cut(s)	1818, 1893
Aor13HI	TCCGGA	1 cut(s)	742
Aor51HI	AGCGCT	1 cut(s)	1328
ApoI	RAATTY	1 cut(s)	143
ArsI	GACNNNNNNTTYG	2 cut(s)	1400, 1432
AscI	GGCGCGCC	1 cut(s)	2068
AsiGI	ACCGGT	1 cut(s)	1487
AspS9I	GGNCC	6 cut(s)	21, 1531, 1536, 1638, 1671, 1999
AsuC2I	CCSGG	3 cut(s)	1262, 1337, 1622
AsuHPI	GGTGA	3 cut(s)	16, 1000, 1465
AsuII	TTCGAA	1 cut(s)	2142
AsuNHI	GCTAGC	1 cut(s)	1280
AvaI	CYCGRG	2 cut(s)	1818, 1893
AvaII	GGWCC	2 cut(s)	1638, 1671
BalI	TGGCCA	1 cut(s)	1203
BamHI	GGATCC	1 cut(s)	1550
BanI	GGYRCC	3 cut(s)	722, 973, 1868
BanII	GRGCYC	4 cut(s)	1704, 1726, 1900, 1919
BauI	CACGAG	1 cut(s)	1097
BbsI	GAAGAC	1 cut(s)	1752
Bbv12I	GWGCWC	3 cut(s)	506, 1704, 1919
BccI	CCATC	1 cut(s)	187
BcgI	CGANNNNNNTGC	2 cut(s)	1231, 1265
BciT130I	CCWGG	5 cut(s)	586, 727, 788, 1027, 1205
BcnI	CCSGG	3 cut(s)	1262, 1337, 1622
BcoDI	GTCTC	4 cut(s)	214, 893, 969, 1677
BfaI	CTAG	1 cut(s)	1281
BfmI	CTRYAG	2 cut(s)	343, 1678
BfoI	RGCGCY	5 cut(s)	726, 977, 1011, 1330, 1872
BlpI	GCTNAGC	3 cut(s)	1442, 1475, 1956
Bme1390I	CCNGG	8 cut(s)	586, 727, 788, 1027, 1205, 1262, 1337, 1622
Bme18I	GGWCC	2 cut(s)	1638, 1671
BmeRI	GACNNNNNGTC	1 cut(s)	1690
BmeT110I	CYCGRG	2 cut(s)	1818, 1893
BmgBI	CACGTC	1 cut(s)	1810
BmgT120I	GGNCC	6 cut(s)	21, 1531, 1536, 1638, 1671, 1999
BmiI	GGNNCC	8 cut(s)	724, 975, 1271, 1552, 1639, 1640, 1870, 2043
BmrFI	CCNGG	8 cut(s)	586, 727, 788, 1027, 1205, 1262, 1337, 1622
BmsI	GCATC	2 cut(s)	431, 1174
BmtI	GCTAGC	1 cut(s)	1284
BoxI	GACNNNNGTC	1 cut(s)	995
BpiI	GAAGAC	1 cut(s)	1752
BplI	GAGNNNNNCTC	2 cut(s)	1587, 1619
BpmI	CTGGAG	2 cut(s)	1454, 1892
Bpu10I	CCTNAGC	1 cut(s)	2088
Bpu1102I	GCTNAGC	3 cut(s)	1442, 1475, 1956
Bpu14I	TTCGAA	1 cut(s)	2142
BpuEI	CTTGAG	2 cut(s)	697, 1214
BpuMI	CCSGG	3 cut(s)	1262, 1337, 1622
BsaAI	YACGTR	1 cut(s)	2026
BsaI	GGTCTC	2 cut(s)	214, 1677
BsaJI	CCNNGG	9 cut(s)	240, 787, 1204, 1335, 1398, 1539, 1824, 1975, 2058
BsaWI	WCCGGW	3 cut(s)	742, 1487, 1553
BsaXI	ACNNNNNCTCC	6 cut(s)	362, 392, 601, 631, 1076, 1106
Bse118I	RCCGGY	5 cut(s)	205, 1154, 1487, 1533, 1839
Bse1I	ACTGG	1 cut(s)	1909
BseAI	TCCGGA	1 cut(s)	742
BseBI	CCWGG	5 cut(s)	586, 727, 788, 1027, 1205
BseDI	CCNNGG	9 cut(s)	240, 787, 1204, 1335, 1398, 1539, 1824, 1975, 2058
BseGI	GGATG	4 cut(s)	179, 1149, 1371, 1785
BseMII	CTCAG	3 cut(s)	1489, 1878, 1947
BseNI	ACTGG	1 cut(s)	1909
BsePI	GCGCGC	1 cut(s)	2068
BseX3I	CGGCCG	2 cut(s)	1152, 1156
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	2 cut(s)	13, 1955
Bsh1285I	CGRYCG	3 cut(s)	1155, 1159, 1757
BshNI	GGYRCC	3 cut(s)	722, 973, 1868
BshTI	ACCGGT	1 cut(s)	1487
BsiEI	CGRYCG	3 cut(s)	1155, 1159, 1757
BsiHKAI	GWGCWC	3 cut(s)	506, 1704, 1919
BsiHKCI	CYCGRG	2 cut(s)	1818, 1893
BsiWI	CGTACG	1 cut(s)	1666
BslFI	GGGAC	3 cut(s)	290, 1604, 1624
BsmAI	GTCTC	4 cut(s)	214, 893, 969, 1677
BsmBI	CGTCTC	1 cut(s)	969
BsmFI	GGGAC	3 cut(s)	290, 1604, 1624
Bso31I	GGTCTC	2 cut(s)	214, 1677
BsoBI	CYCGRG	2 cut(s)	1818, 1893
Bsp119I	TTCGAA	1 cut(s)	2142
Bsp1286I	GDGCHC	5 cut(s)	506, 1704, 1726, 1900, 1919
Bsp13I	TCCGGA	1 cut(s)	742
Bsp143I	GATC	6 cut(s)	365, 1163, 1318, 1550, 1560, 1754
Bsp1720I	GCTNAGC	3 cut(s)	1442, 1475, 1956
BspCNI	CTCAG	3 cut(s)	1488, 1877, 1948
BspEI	TCCGGA	1 cut(s)	742
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	8 cut(s)	724, 975, 1271, 1552, 1639, 1640, 1870, 2043
BspOI	GCTAGC	1 cut(s)	1284
BspPI	GGATC	4 cut(s)	360, 1545, 1555, 1558
BspQI	GCTCTTC	1 cut(s)	1584
BspT104I	TTCGAA	1 cut(s)	2142
BspT107I	GGYRCC	3 cut(s)	722, 973, 1868
BspTNI	GGTCTC	2 cut(s)	214, 1677
BsrBI	CCGCTC	2 cut(s)	703, 1720
BsrFI	RCCGGY	5 cut(s)	205, 1154, 1487, 1533, 1839
BsrI	ACTGG	1 cut(s)	1909
BssAI	RCCGGY	5 cut(s)	205, 1154, 1487, 1533, 1839
BssECI	CCNNGG	9 cut(s)	240, 787, 1204, 1335, 1398, 1539, 1824, 1975, 2058
BssHII	GCGCGC	1 cut(s)	2068
BssMI	GATC	6 cut(s)	365, 1163, 1318, 1550, 1560, 1754
BssSI	CACGAG	1 cut(s)	1097
BssT1I	CCWWGG	1 cut(s)	1824
Bst2BI	CACGAG	1 cut(s)	1097
Bst2UI	CCWGG	5 cut(s)	586, 727, 788, 1027, 1205
Bst4CI	ACNGT	4 cut(s)	994, 1387, 1671, 1976
Bst6I	CTCTTC	3 cut(s)	833, 1584, 1774
BstBAI	YACGTR	1 cut(s)	2026
BstBI	TTCGAA	1 cut(s)	2142
BstC8I	GCNNGC	9 cut(s)	455, 1156, 1282, 1535, 1722, 1742, 1746, 1962, 2070
BstDEI	CTNAG	6 cut(s)	633, 1442, 1475, 1864, 1956, 2088
BstDSI	CCRYGG	3 cut(s)	240, 1539, 1975
BstENI	CCTNNNNNAGG	1 cut(s)	1120
BstF5I	GGATG	4 cut(s)	179, 1149, 1371, 1785
BstH2I	RGCGCY	5 cut(s)	726, 977, 1011, 1330, 1872
BstKTI	GATC	6 cut(s)	368, 1166, 1321, 1553, 1563, 1757
BstMAI	GTCTC	4 cut(s)	214, 893, 969, 1677
BstMBI	GATC	6 cut(s)	365, 1163, 1318, 1550, 1560, 1754
BstMCI	CGRYCG	3 cut(s)	1155, 1159, 1757
BstNI	CCWGG	5 cut(s)	586, 727, 788, 1027, 1205
BstPAI	GACNNNNGTC	1 cut(s)	995
BstSCI	CCNGG	8 cut(s)	584, 725, 786, 1025, 1203, 1260, 1335, 1620
BstSFI	CTRYAG	2 cut(s)	343, 1678
BstV2I	GAAGAC	1 cut(s)	1752
BstX2I	RGATCY	1 cut(s)	1550
BstXI	CCANNNNNNTGG	1 cut(s)	1429
BstYI	RGATCY	1 cut(s)	1550
BstZI	CGGCCG	2 cut(s)	1152, 1156
BtgI	CCRYGG	3 cut(s)	240, 1539, 1975
BtgZI	GCGATG	1 cut(s)	1670
BtrI	CACGTC	1 cut(s)	1810
BtsCI	GGATG	4 cut(s)	179, 1149, 1371, 1785
Cac8I	GCNNGC	9 cut(s)	455, 1156, 1282, 1535, 1722, 1742, 1746, 1962, 2070
CciI	TCATGA	1 cut(s)	651
Cfr10I	RCCGGY	5 cut(s)	205, 1154, 1487, 1533, 1839
Cfr13I	GGNCC	6 cut(s)	21, 1531, 1536, 1638, 1671, 1999
Cfr42I	CCGCGG	1 cut(s)	243
CseI	GACGC	8 cut(s)	517, 782, 1088, 1160, 1232, 1421, 1468, 2059
Csp6I	GTAC	3 cut(s)	480, 1667, 1733
CspAI	ACCGGT	1 cut(s)	1487
CviAII	CATG	4 cut(s)	539, 559, 652, 706
CviQI	GTAC	3 cut(s)	480, 1667, 1733
DdeI	CTNAG	6 cut(s)	633, 1442, 1475, 1864, 1956, 2088
DinI	GGCGCC	3 cut(s)	724, 975, 1870
DpnI	GATC	6 cut(s)	367, 1165, 1320, 1552, 1562, 1756
DpnII	GATC	6 cut(s)	365, 1163, 1318, 1550, 1560, 1754
DrdI	GACNNNNNNGTC	1 cut(s)	1376
DriI	GACNNNNNGTC	1 cut(s)	1690
DseDI	GACNNNNNNGTC	1 cut(s)	1376
EaeI	YGGCCR	6 cut(s)	243, 483, 1152, 1156, 1201, 1827
EagI	CGGCCG	2 cut(s)	1152, 1156
Eam1104I	CTCTTC	3 cut(s)	833, 1584, 1774
Eam1105I	GACNNNNNGTC	1 cut(s)	1690
EarI	CTCTTC	3 cut(s)	833, 1584, 1774
EciI	GGCGGA	3 cut(s)	413, 1303, 1979
Ecl136II	GAGCTC	2 cut(s)	1702, 1917
EclXI	CGGCCG	2 cut(s)	1152, 1156
Eco130I	CCWWGG	1 cut(s)	1824
Eco24I	GRGCYC	4 cut(s)	1704, 1726, 1900, 1919
Eco31I	GGTCTC	2 cut(s)	214, 1677
Eco47I	GGWCC	2 cut(s)	1638, 1671
Eco47III	AGCGCT	1 cut(s)	1328
Eco52I	CGGCCG	2 cut(s)	1152, 1156
Eco53kI	GAGCTC	2 cut(s)	1702, 1917
Eco57I	CTGAAG	1 cut(s)	1872
Eco88I	CYCGRG	2 cut(s)	1818, 1893
EcoICRI	GAGCTC	2 cut(s)	1702, 1917
EcoNI	CCTNNNNNAGG	1 cut(s)	1120
EcoO109I	RGGNCCY	2 cut(s)	21, 1638
EcoRII	CCWGG	5 cut(s)	584, 725, 786, 1025, 1203
EcoT14I	CCWWGG	1 cut(s)	1824
EcoT38I	GRGCYC	4 cut(s)	1704, 1726, 1900, 1919
EgeI	GGCGCC	3 cut(s)	724, 975, 1870
EheI	GGCGCC	3 cut(s)	724, 975, 1870
ErhI	CCWWGG	1 cut(s)	1824
Esp3I	CGTCTC	1 cut(s)	969
FaeI	CATG	4 cut(s)	542, 562, 655, 709
FaiI	YATR	9 cut(s)	38, 540, 560, 653, 707, 1211, 1289, 1644, 2099
FaqI	GGGAC	3 cut(s)	290, 1604, 1624
FatI	CATG	4 cut(s)	538, 558, 651, 705
FauI	CCCGC	2 cut(s)	1628, 1713
FblI	GTMKAC	1 cut(s)	999
FokI	GGATG	4 cut(s)	166, 1156, 1358, 1772
FriOI	GRGCYC	4 cut(s)	1704, 1726, 1900, 1919
FseI	GGCCGGCC	2 cut(s)	1158, 1537
FspBI	CTAG	1 cut(s)	1281
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	2 cut(s)	1454, 1892
HaeII	RGCGCY	5 cut(s)	726, 977, 1011, 1330, 1872
HgaI	GACGC	8 cut(s)	517, 782, 1088, 1160, 1232, 1421, 1468, 2059
Hin1II	CATG	4 cut(s)	542, 562, 655, 709
HincII	GTYRAC	2 cut(s)	1000, 1219
HindII	GTYRAC	2 cut(s)	1000, 1219
HphI	GGTGA	3 cut(s)	16, 1000, 1465
Hpy166II	GTNNAC	6 cut(s)	685, 1000, 1113, 1219, 1381, 1674
Hpy188III	TCNNGA	8 cut(s)	211, 544, 652, 664, 743, 806, 966, 1231
Hpy8I	GTNNAC	6 cut(s)	685, 1000, 1113, 1219, 1381, 1674
HpyAV	CCTTC	8 cut(s)	12, 34, 203, 402, 941, 963, 1228, 1237
HpyCH4III	ACNGT	4 cut(s)	994, 1387, 1671, 1976
HpyCH4IV	ACGT	9 cut(s)	303, 660, 716, 959, 1002, 1148, 1461, 1809, 2025
HpyCH4V	TGCA	6 cut(s)	30, 300, 457, 576, 1252, 1972
HpyF3I	CTNAG	6 cut(s)	633, 1442, 1475, 1864, 1956, 2088
HpySE526I	ACGT	9 cut(s)	303, 660, 716, 959, 1002, 1148, 1461, 1809, 2025
Hsp92II	CATG	4 cut(s)	542, 562, 655, 709
KasI	GGCGCC	3 cut(s)	722, 973, 1868
KflI	GGGWCCC	1 cut(s)	1638
Kpn2I	TCCGGA	1 cut(s)	742
KroI	GCCGGC	2 cut(s)	1154, 1533
KroNI	GCCGGC	2 cut(s)	1156, 1535
KspI	CCGCGG	1 cut(s)	243
Kzo9I	GATC	6 cut(s)	365, 1163, 1318, 1550, 1560, 1754
LguI	GCTCTTC	1 cut(s)	1584
LmnI	GCTCC	9 cut(s)	509, 891, 934, 1334, 1473, 1849, 1911, 1966, 2041
LweI	GCATC	2 cut(s)	431, 1174
MaeI	CTAG	1 cut(s)	1281
MaeII	ACGT	9 cut(s)	303, 660, 716, 959, 1002, 1148, 1461, 1809, 2025
MaeIII	GTNAC	5 cut(s)	64, 988, 1134, 1483, 1810
MalI	GATC	6 cut(s)	367, 1165, 1320, 1552, 1562, 1756
MbiI	CCGCTC	2 cut(s)	703, 1720
MboI	GATC	6 cut(s)	365, 1163, 1318, 1550, 1560, 1754
MboII	GAAGA	9 cut(s)	145, 153, 261, 850, 1059, 1601, 1752, 1755, 1761
MflI	RGATCY	1 cut(s)	1550
MhlI	GDGCHC	5 cut(s)	506, 1704, 1726, 1900, 1919
MlsI	TGGCCA	1 cut(s)	1203
MluCI	AATT	4 cut(s)	143, 265, 1062, 1627
MluI	ACGCGT	1 cut(s)	1413
MluNI	TGGCCA	1 cut(s)	1203
Mly113I	GGCGCC	3 cut(s)	723, 974, 1869
MlyI	GAGTC	5 cut(s)	208, 650, 755, 1841, 2130
MmeI	TCCRAC	7 cut(s)	393, 774, 1101, 1154, 1369, 1800, 1813
Mox20I	TGGCCA	1 cut(s)	1203
MroI	TCCGGA	1 cut(s)	742
MroNI	GCCGGC	2 cut(s)	1154, 1533
MscI	TGGCCA	1 cut(s)	1203
MseI	TTAA	1 cut(s)	1394
MslI	CAYNNNNRTG	2 cut(s)	35, 1992
Msp20I	TGGCCA	1 cut(s)	1203
MspA1I	CMGCKG	3 cut(s)	228, 242, 2047
MspR9I	CCNGG	8 cut(s)	586, 727, 788, 1027, 1205, 1262, 1337, 1622
MvaI	CCWGG	5 cut(s)	586, 727, 788, 1027, 1205
NaeI	GCCGGC	2 cut(s)	1156, 1535
NarI	GGCGCC	3 cut(s)	723, 974, 1869
NciI	CCSGG	3 cut(s)	1262, 1337, 1622
NdeII	GATC	6 cut(s)	365, 1163, 1318, 1550, 1560, 1754
NgoMIV	GCCGGC	2 cut(s)	1154, 1533
NheI	GCTAGC	1 cut(s)	1280
NlaIII	CATG	4 cut(s)	542, 562, 655, 709
NlaIV	GGNNCC	8 cut(s)	724, 975, 1271, 1552, 1639, 1640, 1870, 2043
NmeAIII	GCCGAG	6 cut(s)	523, 1548, 1855, 1898, 2039, 2101
NmuCI	GTSAC	2 cut(s)	988, 1810
NspV	TTCGAA	1 cut(s)	2142
OliI	CACNNNNGTG	1 cut(s)	1992
PaeR7I	CTCGAG	1 cut(s)	1818
PagI	TCATGA	1 cut(s)	651
PalAI	GGCGCGCC	1 cut(s)	2068
PauI	GCGCGC	1 cut(s)	2068
PciSI	GCTCTTC	1 cut(s)	1584
PcsI	WCGNNNNNNNCGW	3 cut(s)	1374, 1395, 1425
PdiI	GCCGGC	2 cut(s)	1156, 1535
PfeI	GAWTC	5 cut(s)	447, 739, 832, 866, 1030
Pfl23II	CGTACG	1 cut(s)	1666
PflFI	GACNNNGTC	1 cut(s)	961
PflMI	CCANNNNNTGG	1 cut(s)	1996
PinAI	ACCGGT	1 cut(s)	1487
Ple19I	CGATCG	1 cut(s)	1757
PleI	GAGTC	5 cut(s)	208, 649, 754, 1840, 2129
PluTI	GGCGCC	3 cut(s)	726, 977, 1872
PpsI	GAGTC	5 cut(s)	208, 649, 754, 1840, 2129
Ppu21I	YACGTR	1 cut(s)	2026
PpuMI	RGGWCCY	1 cut(s)	1638
PshAI	GACNNNNGTC	1 cut(s)	995
Psp124BI	GAGCTC	2 cut(s)	1704, 1919
Psp5II	RGGWCCY	1 cut(s)	1638
Psp6I	CCWGG	5 cut(s)	584, 725, 786, 1025, 1203
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	5 cut(s)	584, 725, 786, 1025, 1203
PspLI	CGTACG	1 cut(s)	1666
PspN4I	GGNNCC	8 cut(s)	724, 975, 1271, 1552, 1639, 1640, 1870, 2043
PspPI	GGNCC	6 cut(s)	21, 1531, 1536, 1638, 1671, 1999
PspPPI	RGGWCCY	1 cut(s)	1638
PspXI	VCTCGAGB	1 cut(s)	1818
PsuI	RGATCY	1 cut(s)	1550
PsyI	GACNNNGTC	1 cut(s)	961
PteI	GCGCGC	1 cut(s)	2068
PvuI	CGATCG	1 cut(s)	1757
RigI	GGCCGGCC	2 cut(s)	1158, 1537
RsaI	GTAC	3 cut(s)	481, 1668, 1734
RsaNI	GTAC	3 cut(s)	480, 1667, 1733
RseI	CAYNNNNRTG	2 cut(s)	35, 1992
SacI	GAGCTC	2 cut(s)	1704, 1919
SacII	CCGCGG	1 cut(s)	243
SalI	GTCGAC	1 cut(s)	998
SapI	GCTCTTC	1 cut(s)	1584
SaqAI	TTAA	1 cut(s)	1394
Sau3AI	GATC	6 cut(s)	365, 1163, 1318, 1550, 1560, 1754
Sau96I	GGNCC	6 cut(s)	21, 1531, 1536, 1638, 1671, 1999
SchI	GAGTC	5 cut(s)	208, 650, 755, 1841, 2130
ScrFI	CCNGG	8 cut(s)	586, 727, 788, 1027, 1205, 1262, 1337, 1622
SduI	GDGCHC	5 cut(s)	506, 1704, 1726, 1900, 1919
SfaNI	GCATC	2 cut(s)	431, 1174
SfcI	CTRYAG	2 cut(s)	343, 1678
SfoI	GGCGCC	3 cut(s)	724, 975, 1870
Sfr274I	CTCGAG	1 cut(s)	1818
Sfr303I	CCGCGG	1 cut(s)	243
SfuI	TTCGAA	1 cut(s)	2142
SgrBI	CCGCGG	1 cut(s)	243
SgsI	GGCGCGCC	1 cut(s)	2068
SinI	GGWCC	2 cut(s)	1638, 1671
SlaI	CTCGAG	1 cut(s)	1818
SmiMI	CAYNNNNRTG	2 cut(s)	35, 1992
SmlI	CTYRAG	3 cut(s)	676, 1229, 1818
SmoI	CTYRAG	3 cut(s)	676, 1229, 1818
Sse9I	AATT	4 cut(s)	143, 265, 1062, 1627
SspDI	GGCGCC	3 cut(s)	722, 973, 1868
SspMI	CTAG	1 cut(s)	1281
SstI	GAGCTC	2 cut(s)	1704, 1919
StyD4I	CCNGG	8 cut(s)	584, 725, 786, 1025, 1203, 1260, 1335, 1620
StyI	CCWWGG	1 cut(s)	1824
TaaI	ACNGT	4 cut(s)	994, 1387, 1671, 1976
TaiI	ACGT	9 cut(s)	306, 663, 719, 962, 1005, 1151, 1464, 1812, 2028
TasI	AATT	4 cut(s)	143, 265, 1062, 1627
TfiI	GAWTC	5 cut(s)	447, 739, 832, 866, 1030
Tru1I	TTAA	1 cut(s)	1394
Tru9I	TTAA	1 cut(s)	1394
TseFI	GTSAC	2 cut(s)	988, 1810
Tsp45I	GTSAC	2 cut(s)	988, 1810
TspDTI	ATGAA	1 cut(s)	2129
TspGWI	ACGGA	3 cut(s)	1153, 1654, 2034
Tth111I	GACNNNGTC	1 cut(s)	961
Van91I	CCANNNNNTGG	1 cut(s)	1996
VpaK11BI	GGWCC	2 cut(s)	1638, 1671
XagI	CCTNNNNNAGG	1 cut(s)	1120
XapI	RAATTY	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	1818
XmiI	GTMKAC	1 cut(s)	999
XspI	CTAG	1 cut(s)	1281
ZraI	GACGTC	6 cut(s)	661, 717, 960, 1003, 1149, 1462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.