Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011222

Physical Location & Seq

Genomic Coordinates Reverse (-)

21417542 .. 21419143

Gene Structure 1602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG217200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGCTCTGCCCAGTCTGCCACGCCACCTGGAAAGAGCTGCCTCTGCTCGAAACTCTCACTCCTCGCACCAATACTAATCCCCAGTCGAAGCTCAGAGACGTCAAGATCAAGCCCTTGAGGGTTTACAACGACGACGAGCCGCTCATGTCGCCCACCTCCGGCGCCAGGTTCAATCCCATTCCGGAGTCCGACGAAAACGAGGACGAAAACGATGCCGTTGAGTTCCAGGGCTTCTTTGTCAATCCTGATAGGAATAATGTCTGTTCCGGGAATCGCAAGAGTGTGGAGTTTAGTTTGCTGCCTGAATCGGCGGTGGTGGCGCTTGGGAGGAGCTTCGAGACTTACGCCGTCGTCTTGAAAGTCAAAGCTCCGCAGCTTGTGGAAGGTAGAGCGACGTCGTCGTCGCGAAGGGCGCCGATTGACTTGGTGACCGTGGTCGACGTCAGCGCCAATACCAGCCGCGCCAGGATTCAGGCCACCAAGCGCGCGTTACGGTTGATAATTTCTTCTCTCTCCGACGCCGACAGGCTCTCCATCGTGGCGTTCTCGTCCACCTCCAAGAGGCTGCTGCCGTTACGGAGGATGACGTCGCCCGGCCGGAGATCGGCGCGTCGGATAGTTGACGCGCTCTGCGGCGTTGGCCAGGGTATGTGTGTCAACGACGCGCTCAAGAAGGCGGCCAAGGTGTTGCAAGACCGCCGGGAGAGAAACCCTGTCGCTAGCATTATGCTCCTCTCGGACGGCGGCGGCGTTTCCGCCAATCAGAAGCGCTCCTCCCCGGTCGTGTCCTCCACGCGCTTCCCCCACCTCGACATCCCCGTCCACACCGTCGGATTAACCGAGACTACCGACGACGCGTTCGCCAAGTGCGTGGGGGGTTTGCTAAGCGTGGTGGTGAAAGACGTCAAGCTCCAGCTCAGCGTCGTAACCGGTTCAGCCAACGCCGAGATCGGGGCGGTTTATTCTCTCACGGGCCGGCCCACGGCTCTCGGATCCGGTTCGATCCGGCTCGGCGACCTCTACGCCGGAGAAGAGCGAGAGCTGCTCGTCGAATTGAAAGTCCCGGTCAATTCCGGCGGGTCCCACACCCAAAACGCGATGATGTCCGTACGGTCCACCTACAGAGACCCGTCGTCGAATGAGCTCGTATTTTCCAAAGAGCGGGCCCTCCTCGTACCGCGCTCGCAAGCCGTCCGATCGCCTTCTACCTCTTCCTCCAACCCCAACATCCAACGGCTGCGAAATCTCCACGTCACGGCTCGAGCCGTGGCCGAATCGCGCCGGTTCTTGGAGCGAAACGACTTCTCAGGCGCCCATCACTTGCTGACTTCGGCTCGAGCTCTGCTGCTCCAGTCGAGCTCGGCTTCGGCGGAGGAGTTCCTGCGCGGCTTGGAGGCTGAGCTGGCGGAGCTGCACCGTGGAAGGCAGCACCAGAGTGTGGCCCAGAGGCAGAGAGGGAACTGGCACTTGGAGGAGAAGCCGGAGCCGCTGACGCCGACCTCGGCTTGGCGCGCCGCCGAGAGATTGGCTAAGGTGGCTATAATGAGGAAGTCCATGAACAGAGTCAGCGACTTACACGGCTTCGAAAACGCCAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010197 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022622 GO:0030054 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048229 GO:0048284 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VWA VWA_2 VWA_3 zf-RING_11

Protein Analysis

533

Amino Acids

58.35

Weight (kDa)

9.83

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VWA_3	PF13768	141 - 285	2.2e-12	von Willebrand factor type A domain
VWA	PF00092	141 - 286	2.4e-12	von Willebrand factor type A domain
VWA_2	PF13519	142 - 248	6.8e-16	von Willebrand factor type A domain
WAV3_C	PF25243	408 - 481	3.1e-35	E3 ubiquitin-protein ligase WAV3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22680 AT4G37890 AT4G37890
fragaria_vesca	FvH4_1g18891
malus_domestica	MD01G1045900.v1.1 MD15G1305700.v1.1
prunus_persica	Prupe.6G210600_v2.0.a1
pyrus_communis	pycom01g07210 pycom15g26960
rosa_chinensis	RchiOBHm_Chr2g0109851
rosa_laevigata	RLG00000017767
rosa_multiflora	Rmu_co8072298.1_g000001 Rmu_co8290675.1_g000001 Rmu_sc0008299.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133910
rosa_samantha	Rh2AG215300 Rh2BG225400 Rh2CG217200 Rh2DG220800
rosa_wichuraiana	Rw2G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	400, 818
AatII	GACGTC	5 cut(s)	102, 398, 444, 590, 906
AccB1I	GGYRCC	3 cut(s)	161, 412, 1310
AccB7I	CCANNNNNTGG	1 cut(s)	1438
AccBSI	CCGCTC	2 cut(s)	142, 1162
AccI	GTMKAC	1 cut(s)	438
AccIII	TCCGGA	1 cut(s)	181
AclWI	GGATC	3 cut(s)	987, 997, 1000
AcoI	YGGCCR	4 cut(s)	595, 640, 678, 1269
AfaI	GTAC	2 cut(s)	1110, 1176
AfeI	AGCGCT	1 cut(s)	770
AflIII	ACRYGT	1 cut(s)	855
AgeI	ACCGGT	1 cut(s)	929
AgsI	TTSAA	3 cut(s)	172, 358, 1057
AhdI	GACNNNNNGTC	1 cut(s)	1132
AjiI	CACGTC	1 cut(s)	1252
AjnI	CCWGG	5 cut(s)	26, 164, 225, 464, 642
AjuI	GAANNNNNNNTTGG	2 cut(s)	1451, 1483
AleI	CACNNNNGTG	1 cut(s)	1434
Alw21I	GWGCWC	3 cut(s)	1146, 1342, 1361
Alw26I	GTCTC	4 cut(s)	90, 332, 836, 1119
AlwI	GGATC	3 cut(s)	987, 997, 1000
Ama87I	CYCGRG	2 cut(s)	1260, 1335
Aor13HI	TCCGGA	1 cut(s)	181
Aor51HI	AGCGCT	1 cut(s)	770
AoxI	GGCC	9 cut(s)	474, 595, 640, 678, 973, 977, 1164, 1269, 1440
ApaI	GGGCCC	1 cut(s)	1168
ArsI	GACNNNNNNTTYG	4 cut(s)	842, 874, 1044, 1076
AscI	GGCGCGCC	1 cut(s)	1510
AsiGI	ACCGGT	1 cut(s)	929
AspS9I	GGNCC	7 cut(s)	973, 978, 1080, 1113, 1164, 1165, 1441
AsuC2I	CCSGG	5 cut(s)	268, 594, 701, 779, 1064
AsuHPI	GGTGA	2 cut(s)	439, 907
AsuII	TTCGAA	1 cut(s)	1584
AsuNHI	GCTAGC	1 cut(s)	719
AvaI	CYCGRG	2 cut(s)	1260, 1335
AvaII	GGWCC	2 cut(s)	1080, 1113
BaeGI	GKGCMC	1 cut(s)	1168
BalI	TGGCCA	1 cut(s)	642
BamHI	GGATCC	1 cut(s)	992
BanI	GGYRCC	3 cut(s)	161, 412, 1310
BanII	GRGCYC	4 cut(s)	1146, 1168, 1342, 1361
Bbv12I	GWGCWC	3 cut(s)	1146, 1342, 1361
BccI	CCATC	2 cut(s)	542, 1323
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	5 cut(s)	28, 166, 227, 466, 644
BcnI	CCSGG	5 cut(s)	268, 594, 701, 779, 1064
BcoDI	GTCTC	4 cut(s)	90, 332, 836, 1119
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	1 cut(s)	1120
BfoI	RGCGCY	6 cut(s)	165, 323, 416, 450, 772, 1314
BlpI	GCTNAGC	3 cut(s)	884, 917, 1398
Bme18I	GGWCC	2 cut(s)	1080, 1113
BmeRI	GACNNNNNGTC	1 cut(s)	1132
BmeT110I	CYCGRG	2 cut(s)	1260, 1335
BmgBI	CACGTC	1 cut(s)	1252
BmgT120I	GGNCC	7 cut(s)	973, 978, 1080, 1113, 1164, 1165, 1441
BmiI	GGNNCC	8 cut(s)	163, 414, 994, 1081, 1082, 1166, 1312, 1485
BmrI	ACTGGG	2 cut(s)	5, 76
BmsI	GCATC	1 cut(s)	202
BmtI	GCTAGC	1 cut(s)	723
BmuI	ACTGGG	2 cut(s)	5, 76
BoxI	GACNNNNGTC	1 cut(s)	434
BplI	GAGNNNNNCTC	2 cut(s)	1029, 1061
BpmI	CTGGAG	2 cut(s)	896, 1334
Bpu10I	CCTNAGC	1 cut(s)	1530
Bpu1102I	GCTNAGC	3 cut(s)	884, 917, 1398
Bpu14I	TTCGAA	1 cut(s)	1584
BpuEI	CTTGAG	2 cut(s)	136, 653
BpuMI	CCSGG	5 cut(s)	268, 594, 701, 779, 1064
BsaI	GGTCTC	1 cut(s)	1119
BsaJI	CCNNGG	9 cut(s)	226, 432, 643, 681, 777, 981, 1266, 1417, 1500
BsaWI	WCCGGW	3 cut(s)	181, 929, 995
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 73, 515, 545
Bse118I	RCCGGY	3 cut(s)	929, 975, 1281
Bse1I	ACTGG	4 cut(s)	11, 82, 1351, 1466
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	5 cut(s)	28, 166, 227, 466, 644
BseDI	CCNNGG	9 cut(s)	226, 432, 643, 681, 777, 981, 1266, 1417, 1500
BseGI	GGATG	3 cut(s)	588, 813, 1227
BseMII	CTCAG	4 cut(s)	106, 931, 1320, 1389
BseNI	ACTGG	4 cut(s)	11, 82, 1351, 1466
BsePI	GCGCGC	2 cut(s)	484, 1510
BseRI	GAGGAG	7 cut(s)	51, 343, 722, 763, 1160, 1388, 1487
BseSI	GKGCMC	1 cut(s)	1168
BseX3I	CGGCCG	1 cut(s)	595
BsgI	GTGCAG	1 cut(s)	1397
Bsh1285I	CGRYCG	3 cut(s)	598, 783, 1199
BshFI	GGCC	9 cut(s)	476, 597, 642, 680, 975, 979, 1166, 1271, 1442
BshNI	GGYRCC	3 cut(s)	161, 412, 1310
BshTI	ACCGGT	1 cut(s)	929
BsiEI	CGRYCG	3 cut(s)	598, 783, 1199
BsiHKAI	GWGCWC	3 cut(s)	1146, 1342, 1361
BsiHKCI	CYCGRG	2 cut(s)	1260, 1335
BsiWI	CGTACG	1 cut(s)	1108
BslFI	GGGAC	2 cut(s)	1046, 1066
BsmAI	GTCTC	4 cut(s)	90, 332, 836, 1119
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	2 cut(s)	1046, 1066
BsnI	GGCC	9 cut(s)	476, 597, 642, 680, 975, 979, 1166, 1271, 1442
Bso31I	GGTCTC	1 cut(s)	1119
BsoBI	CYCGRG	2 cut(s)	1260, 1335
Bsp119I	TTCGAA	1 cut(s)	1584
Bsp120I	GGGCCC	1 cut(s)	1164
Bsp1286I	GDGCHC	4 cut(s)	1146, 1168, 1342, 1361
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	6 cut(s)	105, 602, 948, 992, 1002, 1196
Bsp1720I	GCTNAGC	3 cut(s)	884, 917, 1398
Bsp68I	TCGCGA	1 cut(s)	406
BspANI	GGCC	9 cut(s)	476, 597, 642, 680, 975, 979, 1166, 1271, 1442
BspCNI	CTCAG	4 cut(s)	105, 930, 1319, 1390
BspEI	TCCGGA	1 cut(s)	181
BspLI	GGNNCC	8 cut(s)	163, 414, 994, 1081, 1082, 1166, 1312, 1485
BspOI	GCTAGC	1 cut(s)	723
BspPI	GGATC	3 cut(s)	987, 997, 1000
BspQI	GCTCTTC	1 cut(s)	1026
BspT104I	TTCGAA	1 cut(s)	1584
BspT107I	GGYRCC	3 cut(s)	161, 412, 1310
BspTNI	GGTCTC	1 cut(s)	1119
BsrBI	CCGCTC	2 cut(s)	142, 1162
BsrFI	RCCGGY	3 cut(s)	929, 975, 1281
BsrI	ACTGG	4 cut(s)	11, 82, 1351, 1466
BssAI	RCCGGY	3 cut(s)	929, 975, 1281
BssECI	CCNNGG	9 cut(s)	226, 432, 643, 681, 777, 981, 1266, 1417, 1500
BssHII	GCGCGC	2 cut(s)	484, 1510
BssMI	GATC	6 cut(s)	105, 602, 948, 992, 1002, 1196
BssT1I	CCWWGG	1 cut(s)	681
Bst2UI	CCWGG	5 cut(s)	28, 166, 227, 466, 644
Bst4CI	ACNGT	5 cut(s)	433, 495, 829, 1113, 1418
Bst6I	CTCTTC	2 cut(s)	1026, 1216
BstBI	TTCGAA	1 cut(s)	1584
BstC8I	GCNNGC	8 cut(s)	486, 721, 977, 1164, 1184, 1188, 1404, 1512
BstDEI	CTNAG	6 cut(s)	92, 884, 917, 1306, 1398, 1530
BstDSI	CCRYGG	4 cut(s)	432, 981, 1266, 1417
BstEII	GGTNACC	1 cut(s)	427
BstENI	CCTNNNNNAGG	1 cut(s)	559
BstF5I	GGATG	3 cut(s)	588, 813, 1227
BstH2I	RGCGCY	6 cut(s)	165, 323, 416, 450, 772, 1314
BstKTI	GATC	6 cut(s)	108, 605, 951, 995, 1005, 1199
BstMAI	GTCTC	4 cut(s)	90, 332, 836, 1119
BstMBI	GATC	6 cut(s)	105, 602, 948, 992, 1002, 1196
BstMCI	CGRYCG	3 cut(s)	598, 783, 1199
BstNI	CCWGG	5 cut(s)	28, 166, 227, 466, 644
BstPAI	GACNNNNGTC	1 cut(s)	434
BstPI	GGTNACC	1 cut(s)	427
BstSFI	CTRYAG	1 cut(s)	1120
BstSLI	GKGCMC	1 cut(s)	1168
BstX2I	RGATCY	1 cut(s)	992
BstXI	CCANNNNNNTGG	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	992
BstZI	CGGCCG	1 cut(s)	595
BsuRI	GGCC	9 cut(s)	476, 597, 642, 680, 975, 979, 1166, 1271, 1442
BtgI	CCRYGG	4 cut(s)	432, 981, 1266, 1417
BtgZI	GCGATG	1 cut(s)	1112
BtrI	CACGTC	1 cut(s)	1252
BtsCI	GGATG	3 cut(s)	588, 813, 1227
BtuMI	TCGCGA	1 cut(s)	406
Cac8I	GCNNGC	8 cut(s)	486, 721, 977, 1164, 1184, 1188, 1404, 1512
Cfr10I	RCCGGY	3 cut(s)	929, 975, 1281
Cfr13I	GGNCC	7 cut(s)	973, 978, 1080, 1113, 1164, 1165, 1441
CseI	GACGC	7 cut(s)	527, 599, 632, 671, 863, 910, 1501
Csp6I	GTAC	2 cut(s)	1109, 1175
CspAI	ACCGGT	1 cut(s)	929
CviAII	CATG	2 cut(s)	145, 1555
CviQI	GTAC	2 cut(s)	1109, 1175
DdeI	CTNAG	6 cut(s)	92, 884, 917, 1306, 1398, 1530
DinI	GGCGCC	3 cut(s)	163, 414, 1312
DpnI	GATC	6 cut(s)	107, 604, 950, 994, 1004, 1198
DpnII	GATC	6 cut(s)	105, 602, 948, 992, 1002, 1196
DrdI	GACNNNNNNGTC	2 cut(s)	400, 818
DriI	GACNNNNNGTC	1 cut(s)	1132
DseDI	GACNNNNNNGTC	2 cut(s)	400, 818
EaeI	YGGCCR	4 cut(s)	595, 640, 678, 1269
EagI	CGGCCG	1 cut(s)	595
Eam1104I	CTCTTC	2 cut(s)	1026, 1216
Eam1105I	GACNNNNNGTC	1 cut(s)	1132
EarI	CTCTTC	2 cut(s)	1026, 1216
EciI	GGCGGA	3 cut(s)	745, 1385, 1421
Ecl136II	GAGCTC	3 cut(s)	1144, 1340, 1359
EclXI	CGGCCG	1 cut(s)	595
Eco130I	CCWWGG	1 cut(s)	681
Eco24I	GRGCYC	4 cut(s)	1146, 1168, 1342, 1361
Eco31I	GGTCTC	1 cut(s)	1119
Eco47I	GGWCC	2 cut(s)	1080, 1113
Eco47III	AGCGCT	1 cut(s)	770
Eco52I	CGGCCG	1 cut(s)	595
Eco53kI	GAGCTC	3 cut(s)	1144, 1340, 1359
Eco88I	CYCGRG	2 cut(s)	1260, 1335
Eco91I	GGTNACC	1 cut(s)	427
EcoICRI	GAGCTC	3 cut(s)	1144, 1340, 1359
EcoNI	CCTNNNNNAGG	1 cut(s)	559
EcoO109I	RGGNCCY	2 cut(s)	1080, 1165
EcoO65I	GGTNACC	1 cut(s)	427
EcoRII	CCWGG	5 cut(s)	26, 164, 225, 464, 642
EcoT14I	CCWWGG	1 cut(s)	681
EcoT38I	GRGCYC	4 cut(s)	1146, 1168, 1342, 1361
EgeI	GGCGCC	3 cut(s)	163, 414, 1312
EheI	GGCGCC	3 cut(s)	163, 414, 1312
ErhI	CCWWGG	1 cut(s)	681
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	2 cut(s)	148, 1558
FaiI	YATR	5 cut(s)	146, 650, 728, 1541, 1556
FaqI	GGGAC	2 cut(s)	1046, 1066
FatI	CATG	2 cut(s)	144, 1554
FauI	CCCGC	2 cut(s)	1070, 1155
FblI	GTMKAC	1 cut(s)	438
FokI	GGATG	3 cut(s)	595, 800, 1214
FriOI	GRGCYC	4 cut(s)	1146, 1168, 1342, 1361
FseI	GGCCGGCC	1 cut(s)	979
FspBI	CTAG	1 cut(s)	720
GsuI	CTGGAG	2 cut(s)	896, 1334
HaeII	RGCGCY	6 cut(s)	165, 323, 416, 450, 772, 1314
HaeIII	GGCC	9 cut(s)	476, 597, 642, 680, 975, 979, 1166, 1271, 1442
HgaI	GACGC	7 cut(s)	527, 599, 632, 671, 863, 910, 1501
Hin1II	CATG	2 cut(s)	148, 1558
HincII	GTYRAC	3 cut(s)	439, 622, 658
HindII	GTYRAC	3 cut(s)	439, 622, 658
HinfI	GANTC	6 cut(s)	185, 271, 305, 469, 1274, 1563
HphI	GGTGA	2 cut(s)	439, 907
Hpy166II	GTNNAC	7 cut(s)	124, 439, 552, 622, 658, 823, 1116
Hpy188I	TCNGA	9 cut(s)	95, 190, 517, 615, 739, 765, 833, 992, 1196
Hpy188III	TCNNGA	7 cut(s)	103, 182, 245, 337, 355, 405, 670
Hpy8I	GTNNAC	7 cut(s)	124, 439, 552, 622, 658, 823, 1116
HpyAV	CCTTC	5 cut(s)	377, 402, 667, 1212, 1416
HpyCH4III	ACNGT	5 cut(s)	433, 495, 829, 1113, 1418
HpyCH4IV	ACGT	6 cut(s)	99, 395, 441, 587, 903, 1251
HpyCH4V	TGCA	2 cut(s)	691, 1414
HpyF3I	CTNAG	6 cut(s)	92, 884, 917, 1306, 1398, 1530
HpySE526I	ACGT	6 cut(s)	99, 395, 441, 587, 903, 1251
Hsp92II	CATG	2 cut(s)	148, 1558
KasI	GGCGCC	3 cut(s)	161, 412, 1310
KflI	GGGWCCC	1 cut(s)	1080
Kpn2I	TCCGGA	1 cut(s)	181
KroI	GCCGGC	1 cut(s)	975
KroNI	GCCGGC	1 cut(s)	977
Kzo9I	GATC	6 cut(s)	105, 602, 948, 992, 1002, 1196
LguI	GCTCTTC	1 cut(s)	1026
LmnI	GCTCC	9 cut(s)	330, 373, 735, 776, 915, 1291, 1353, 1408, 1483
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	6 cut(s)	99, 395, 441, 587, 903, 1251
MaeIII	GTNAC	5 cut(s)	427, 489, 573, 925, 1252
MalI	GATC	6 cut(s)	107, 604, 950, 994, 1004, 1198
MbiI	CCGCTC	2 cut(s)	142, 1162
MboI	GATC	6 cut(s)	105, 602, 948, 992, 1002, 1196
MboII	GAAGA	3 cut(s)	498, 1043, 1203
MflI	RGATCY	1 cut(s)	992
MhlI	GDGCHC	4 cut(s)	1146, 1168, 1342, 1361
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	3 cut(s)	501, 1052, 1069
MluI	ACGCGT	1 cut(s)	855
MluNI	TGGCCA	1 cut(s)	642
Mly113I	GGCGCC	3 cut(s)	162, 413, 1311
MlyI	GAGTC	2 cut(s)	194, 1572
MmeI	TCCRAC	6 cut(s)	213, 540, 593, 811, 1242, 1255
Mox20I	TGGCCA	1 cut(s)	642
MroI	TCCGGA	1 cut(s)	181
MroNI	GCCGGC	1 cut(s)	975
MscI	TGGCCA	1 cut(s)	642
MseI	TTAA	1 cut(s)	836
MslI	CAYNNNNRTG	1 cut(s)	1434
Msp20I	TGGCCA	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	1489
MvaI	CCWGG	5 cut(s)	28, 166, 227, 466, 644
NaeI	GCCGGC	1 cut(s)	977
NarI	GGCGCC	3 cut(s)	162, 413, 1311
NciI	CCSGG	5 cut(s)	268, 594, 701, 779, 1064
NdeII	GATC	6 cut(s)	105, 602, 948, 992, 1002, 1196
NgoMIV	GCCGGC	1 cut(s)	975
NheI	GCTAGC	1 cut(s)	719
NlaIII	CATG	2 cut(s)	148, 1558
NlaIV	GGNNCC	8 cut(s)	163, 414, 994, 1081, 1082, 1166, 1312, 1485
NmeAIII	GCCGAG	5 cut(s)	970, 990, 1340, 1481, 1543
NmuCI	GTSAC	2 cut(s)	427, 1252
NruI	TCGCGA	1 cut(s)	406
NspV	TTCGAA	1 cut(s)	1584
OliI	CACNNNNGTG	1 cut(s)	1434
PaeR7I	CTCGAG	2 cut(s)	1260, 1335
PalAI	GGCGCGCC	1 cut(s)	1510
PauI	GCGCGC	2 cut(s)	484, 1510
PciSI	GCTCTTC	1 cut(s)	1026
PcsI	WCGNNNNNNNCGW	4 cut(s)	747, 816, 837, 867
PdiI	GCCGGC	1 cut(s)	977
PfeI	GAWTC	4 cut(s)	271, 305, 469, 1274
Pfl23II	CGTACG	1 cut(s)	1108
PflFI	GACNNNGTC	1 cut(s)	397
PflMI	CCANNNNNTGG	1 cut(s)	1438
PfoI	TCCNGGA	1 cut(s)	266
PinAI	ACCGGT	1 cut(s)	929
Ple19I	CGATCG	1 cut(s)	1199
PleI	GAGTC	2 cut(s)	193, 1571
PluTI	GGCGCC	3 cut(s)	165, 416, 1314
PpsI	GAGTC	2 cut(s)	193, 1571
PpuMI	RGGWCCY	1 cut(s)	1080
PshAI	GACNNNNGTC	1 cut(s)	434
Psp124BI	GAGCTC	3 cut(s)	1146, 1342, 1361
Psp5II	RGGWCCY	1 cut(s)	1080
Psp6I	CCWGG	5 cut(s)	26, 164, 225, 464, 642
PspEI	GGTNACC	1 cut(s)	427
PspGI	CCWGG	5 cut(s)	26, 164, 225, 464, 642
PspLI	CGTACG	1 cut(s)	1108
PspN4I	GGNNCC	8 cut(s)	163, 414, 994, 1081, 1082, 1166, 1312, 1485
PspOMI	GGGCCC	1 cut(s)	1164
PspPI	GGNCC	7 cut(s)	973, 978, 1080, 1113, 1164, 1165, 1441
PspPPI	RGGWCCY	1 cut(s)	1080
PspXI	VCTCGAGB	2 cut(s)	1260, 1335
PsuI	RGATCY	1 cut(s)	992
PsyI	GACNNNGTC	1 cut(s)	397
PteI	GCGCGC	2 cut(s)	484, 1510
PvuI	CGATCG	1 cut(s)	1199
RigI	GGCCGGCC	1 cut(s)	979
RruI	TCGCGA	1 cut(s)	406
RsaI	GTAC	2 cut(s)	1110, 1176
RsaNI	GTAC	2 cut(s)	1109, 1175
RseI	CAYNNNNRTG	1 cut(s)	1434
SacI	GAGCTC	3 cut(s)	1146, 1342, 1361
SalI	GTCGAC	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	1026
SaqAI	TTAA	1 cut(s)	836
Sau3AI	GATC	6 cut(s)	105, 602, 948, 992, 1002, 1196
Sau96I	GGNCC	7 cut(s)	973, 978, 1080, 1113, 1164, 1165, 1441
SchI	GAGTC	2 cut(s)	194, 1572
SduI	GDGCHC	4 cut(s)	1146, 1168, 1342, 1361
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	1120
SfoI	GGCGCC	3 cut(s)	163, 414, 1312
Sfr274I	CTCGAG	2 cut(s)	1260, 1335
SfuI	TTCGAA	1 cut(s)	1584
SgsI	GGCGCGCC	1 cut(s)	1510
SinI	GGWCC	2 cut(s)	1080, 1113
SlaI	CTCGAG	2 cut(s)	1260, 1335
SmiMI	CAYNNNNRTG	1 cut(s)	1434
SmlI	CTYRAG	4 cut(s)	115, 668, 1260, 1335
SmoI	CTYRAG	4 cut(s)	115, 668, 1260, 1335
Sse9I	AATT	3 cut(s)	501, 1052, 1069
SspDI	GGCGCC	3 cut(s)	161, 412, 1310
SspMI	CTAG	1 cut(s)	720
SstI	GAGCTC	3 cut(s)	1146, 1342, 1361
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	5 cut(s)	433, 495, 829, 1113, 1418
TaiI	ACGT	6 cut(s)	102, 398, 444, 590, 906, 1254
TasI	AATT	3 cut(s)	501, 1052, 1069
TauI	GCSGC	9 cut(s)	142, 462, 636, 680, 747, 750, 1389, 1489, 1517
TfiI	GAWTC	4 cut(s)	271, 305, 469, 1274
Tru1I	TTAA	1 cut(s)	836
Tru9I	TTAA	1 cut(s)	836
TseFI	GTSAC	2 cut(s)	427, 1252
Tsp45I	GTSAC	2 cut(s)	427, 1252
TspDTI	ATGAA	1 cut(s)	1571
TspGWI	ACGGA	2 cut(s)	592, 1096
Tth111I	GACNNNGTC	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	1438
VpaK11BI	GGWCC	2 cut(s)	1080, 1113
XagI	CCTNNNNNAGG	1 cut(s)	559
XhoI	CTCGAG	2 cut(s)	1260, 1335
XmiI	GTMKAC	1 cut(s)	438
XspI	CTAG	1 cut(s)	720
ZraI	GACGTC	5 cut(s)	100, 396, 442, 588, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.