Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8072298.1

Orthogroup ID

OG0011222

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 577

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8072298.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

attccggagtccgacgaaaacgaggacgagaacgacgccgttgagttccagggcttctttgtcaatcctgatacgaataatgtctgttccgggaatcgcaggagcgtggagtttagtttgctgcctgaatcggcggtggtggcgcttgggaggagcttcgagacttacgccgtcgtcttgaaagtcaaagctccgcagcttgtggaaggcagagcgacgtcgtcgtcgcgaagggcgccgattgacttggtgaccgtggtcgacgtcagcgccaataccagccgcgccaggattcaggccaccaaacgcgcgttgcggttgatcatttcttctctctccgacgccgacaggctctccatcgtggccttctcgtccacctccaagaggctgctgccgttacggaggatgacgtcgcccggccggagatcggcgcgtcggatagtcgacgcgctctgcggcgtcggccaggggatgtgtgtcaacgacgcgctcaagaaggcggccaaggtgttgcaagaccgccgggagaggaaccccgtcgctagcattatgctcctctcggacggcggcggcggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010197 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022622 GO:0030054 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048229 GO:0048284 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VWA VWA_2 VWA_3 zf-RING_11

Protein Analysis

192

Amino Acids

20.75

Weight (kDa)

9.65

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22680 AT4G37890 AT4G37890
fragaria_vesca	FvH4_1g18891
malus_domestica	MD01G1045900.v1.1 MD15G1305700.v1.1
prunus_persica	Prupe.6G210600_v2.0.a1
pyrus_communis	pycom01g07210 pycom15g26960
rosa_chinensis	RchiOBHm_Chr2g0109851
rosa_laevigata	RLG00000017767
rosa_multiflora	Rmu_co8072298.1_g000001 Rmu_co8290675.1_g000001 Rmu_sc0008299.1_g000001
rosa_roxburghii	Rroxscaffold_2G00133910
rosa_samantha	Rh2AG215300 Rh2BG225400 Rh2CG217200 Rh2DG220800
rosa_wichuraiana	Rw2G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	223
AatII	GACGTC	3 cut(s)	221, 267, 413
AccB1I	GGYRCC	1 cut(s)	235
AccI	GTMKAC	2 cut(s)	261, 444
AccII	CGCG	7 cut(s)	229, 285, 309, 311, 433, 449, 488
AccIII	TCCGGA	1 cut(s)	4
AcoI	YGGCCR	3 cut(s)	418, 463, 501
AcyI	GRCGYC	7 cut(s)	36, 218, 236, 264, 342, 410, 459
AfiI	CCNNNNNNNGG	2 cut(s)	384, 427
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	3 cut(s)	48, 287, 465
AluBI	AGCT	3 cut(s)	156, 191, 199
AluI	AGCT	3 cut(s)	156, 191, 199
Alw26I	GTCTC	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	4
AoxI	GGCC	5 cut(s)	297, 363, 418, 463, 501
ApeKI	GCWGC	4 cut(s)	121, 196, 388, 391
AspLEI	GCGC	8 cut(s)	145, 238, 272, 287, 311, 433, 451, 490
AsuC2I	CCSGG	3 cut(s)	91, 417, 524
AsuHPI	GGTGA	1 cut(s)	262
AsuNHI	GCTAGC	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	235
BbvI	GCAGC	4 cut(s)	108, 208, 375, 378
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	3 cut(s)	23, 155, 379
BciT130I	CCWGG	3 cut(s)	50, 289, 467
BclI	TGATCA	1 cut(s)	321
BcnI	CCSGG	3 cut(s)	91, 417, 524
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	543
BfoI	RGCGCY	3 cut(s)	146, 239, 273
Bme1390I	CCNGG	6 cut(s)	50, 91, 289, 417, 467, 524
BmiI	GGNNCC	2 cut(s)	237, 533
BmrFI	CCNGG	6 cut(s)	50, 91, 289, 417, 467, 524
BmtI	GCTAGC	1 cut(s)	546
BoxI	GACNNNNGTC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	3 cut(s)	91, 417, 524
BsaHI	GRCGYC	7 cut(s)	36, 218, 236, 264, 342, 410, 459
BsaJI	CCNNGG	4 cut(s)	49, 255, 466, 504
BsaWI	WCCGGW	1 cut(s)	4
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	384, 427
BseAI	TCCGGA	1 cut(s)	4
BseBI	CCWGG	3 cut(s)	50, 289, 467
BseDI	CCNNGG	4 cut(s)	49, 255, 466, 504
BseGI	GGATG	2 cut(s)	411, 477
BseLI	CCNNNNNNNGG	2 cut(s)	384, 427
BseRI	GAGGAG	2 cut(s)	166, 545
BseX3I	CGGCCG	1 cut(s)	418
BseXI	GCAGC	4 cut(s)	108, 208, 375, 378
Bsh1236I	CGCG	7 cut(s)	229, 285, 309, 311, 433, 449, 488
Bsh1285I	CGRYCG	1 cut(s)	421
BshFI	GGCC	5 cut(s)	299, 365, 420, 465, 503
BshNI	GGYRCC	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	421
BsiSI	CCGG	5 cut(s)	5, 90, 417, 421, 523
BslI	CCNNNNNNNGG	2 cut(s)	384, 427
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	5 cut(s)	299, 365, 420, 465, 503
Bsp13I	TCCGGA	1 cut(s)	4
Bsp143I	GATC	2 cut(s)	321, 425
Bsp68I	TCGCGA	1 cut(s)	229
BspANI	GGCC	5 cut(s)	299, 365, 420, 465, 503
BspEI	TCCGGA	1 cut(s)	4
BspFNI	CGCG	7 cut(s)	229, 285, 309, 311, 433, 449, 488
BspLI	GGNNCC	2 cut(s)	237, 533
BspOI	GCTAGC	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	235
BssECI	CCNNGG	4 cut(s)	49, 255, 466, 504
BssMI	GATC	2 cut(s)	321, 425
BssNI	GRCGYC	7 cut(s)	36, 218, 236, 264, 342, 410, 459
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	3 cut(s)	50, 289, 467
Bst4CI	ACNGT	1 cut(s)	256
BstACI	GRCGYC	7 cut(s)	36, 218, 236, 264, 342, 410, 459
BstC8I	GCNNGC	1 cut(s)	544
BstDSI	CCRYGG	1 cut(s)	255
BstEII	GGTNACC	1 cut(s)	250
BstENI	CCTNNNNNAGG	1 cut(s)	382
BstF5I	GGATG	2 cut(s)	411, 477
BstFNI	CGCG	7 cut(s)	229, 285, 309, 311, 433, 449, 488
BstH2I	RGCGCY	3 cut(s)	146, 239, 273
BstHHI	GCGC	8 cut(s)	145, 238, 272, 287, 311, 433, 451, 490
BstKTI	GATC	2 cut(s)	324, 428
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	321, 425
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 235, 462, 573
BstNI	CCWGG	3 cut(s)	50, 289, 467
BstPAI	GACNNNNGTC	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	6 cut(s)	48, 89, 287, 415, 465, 522
BstUI	CGCG	7 cut(s)	229, 285, 309, 311, 433, 449, 488
BstV1I	GCAGC	4 cut(s)	108, 208, 375, 378
BstZI	CGGCCG	1 cut(s)	418
BsuRI	GGCC	5 cut(s)	299, 365, 420, 465, 503
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	411, 477
BtuMI	TCGCGA	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	544
CfoI	GCGC	8 cut(s)	145, 238, 272, 287, 311, 433, 451, 490
CseI	GACGC	6 cut(s)	44, 350, 422, 448, 455, 494
DinI	GGCGCC	1 cut(s)	237
DpnI	GATC	2 cut(s)	323, 427
DpnII	GATC	2 cut(s)	321, 425
DrdI	GACNNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	223
EaeI	YGGCCR	3 cut(s)	418, 463, 501
EagI	CGGCCG	1 cut(s)	418
EclXI	CGGCCG	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	504
Eco52I	CGGCCG	1 cut(s)	418
Eco91I	GGTNACC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	250
EcoRII	CCWGG	3 cut(s)	48, 287, 465
EcoT14I	CCWWGG	1 cut(s)	504
EgeI	GGCGCC	1 cut(s)	237
EheI	GGCGCC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	504
FaiI	YATR	1 cut(s)	551
FbaI	TGATCA	1 cut(s)	321
FblI	GTMKAC	2 cut(s)	261, 444
FokI	GGATG	2 cut(s)	418, 484
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	8 cut(s)	144, 237, 271, 286, 310, 432, 450, 489
HaeII	RGCGCY	3 cut(s)	146, 239, 273
HaeIII	GGCC	5 cut(s)	299, 365, 420, 465, 503
HapII	CCGG	5 cut(s)	5, 90, 417, 421, 523
HgaI	GACGC	6 cut(s)	44, 350, 422, 448, 455, 494
HhaI	GCGC	8 cut(s)	145, 238, 272, 287, 311, 433, 451, 490
Hin1I	GRCGYC	7 cut(s)	36, 218, 236, 264, 342, 410, 459
Hin6I	GCGC	8 cut(s)	143, 236, 270, 285, 309, 431, 449, 488
HinP1I	GCGC	8 cut(s)	143, 236, 270, 285, 309, 431, 449, 488
HincII	GTYRAC	3 cut(s)	262, 445, 481
HindII	GTYRAC	3 cut(s)	262, 445, 481
HinfI	GANTC	4 cut(s)	8, 94, 128, 292
HpaII	CCGG	5 cut(s)	5, 90, 417, 421, 523
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	4 cut(s)	262, 375, 445, 481
Hpy188I	TCNGA	4 cut(s)	13, 340, 438, 562
Hpy188III	TCNNGA	6 cut(s)	5, 68, 160, 178, 228, 493
Hpy8I	GTNNAC	4 cut(s)	262, 375, 445, 481
HpyAV	CCTTC	4 cut(s)	200, 225, 376, 490
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	3 cut(s)	218, 264, 410
HpyCH4V	TGCA	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 235, 462, 573
HpySE526I	ACGT	3 cut(s)	218, 264, 410
Hsp92I	GRCGYC	7 cut(s)	36, 218, 236, 264, 342, 410, 459
HspAI	GCGC	8 cut(s)	143, 236, 270, 285, 309, 431, 449, 488
KasI	GGCGCC	1 cut(s)	235
Kpn2I	TCCGGA	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	321, 425
LmnI	GCTCC	4 cut(s)	102, 153, 196, 558
Lsp1109I	GCAGC	4 cut(s)	108, 208, 375, 378
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	3 cut(s)	218, 264, 410
MaeIII	GTNAC	2 cut(s)	250, 396
MalI	GATC	2 cut(s)	323, 427
MboI	GATC	2 cut(s)	321, 425
MboII	GAAGA	1 cut(s)	321
Mly113I	GGCGCC	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	3 cut(s)	36, 363, 416
MnlI	CCTC	7 cut(s)	16, 144, 378, 388, 396, 522, 566
MroI	TCCGGA	1 cut(s)	4
MspI	CCGG	5 cut(s)	5, 90, 417, 421, 523
MspR9I	CCNGG	6 cut(s)	50, 91, 289, 417, 467, 524
MvaI	CCWGG	3 cut(s)	50, 289, 467
MvnI	CGCG	7 cut(s)	229, 285, 309, 311, 433, 449, 488
MwoI	GCNNNNNNNGC	4 cut(s)	140, 235, 462, 573
NarI	GGCGCC	1 cut(s)	236
NciI	CCSGG	3 cut(s)	91, 417, 524
NdeII	GATC	2 cut(s)	321, 425
NheI	GCTAGC	1 cut(s)	542
NlaIV	GGNNCC	2 cut(s)	237, 533
NmuCI	GTSAC	1 cut(s)	250
NruI	TCGCGA	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	94, 128, 292
PflFI	GACNNNGTC	1 cut(s)	220
PfoI	TCCNGGA	1 cut(s)	89
PleI	GAGTC	1 cut(s)	16
PluTI	GGCGCC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	16
PshAI	GACNNNNGTC	1 cut(s)	257
Psp6I	CCWGG	3 cut(s)	48, 287, 465
PspEI	GGTNACC	1 cut(s)	250
PspGI	CCWGG	3 cut(s)	48, 287, 465
PspN4I	GGNNCC	2 cut(s)	237, 533
PsyI	GACNNNGTC	1 cut(s)	220
RruI	TCGCGA	1 cut(s)	229
SalI	GTCGAC	2 cut(s)	260, 443
Sau3AI	GATC	2 cut(s)	321, 425
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	6 cut(s)	50, 91, 289, 417, 467, 524
SetI	ASST	8 cut(s)	158, 193, 201, 221, 267, 380, 413, 510
SfoI	GGCGCC	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SspDI	GGCGCC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	6 cut(s)	48, 89, 287, 415, 465, 522
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	3 cut(s)	221, 267, 413
TaqI	TCGA	3 cut(s)	159, 261, 444
TauI	GCSGC	6 cut(s)	285, 459, 503, 570, 573, 576
TfiI	GAWTC	3 cut(s)	94, 128, 292
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	4 cut(s)	121, 196, 388, 391
Tsp45I	GTSAC	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	415
Tth111I	GACNNNGTC	1 cut(s)	220
XagI	CCTNNNNNAGG	1 cut(s)	382
XmiI	GTMKAC	2 cut(s)	261, 444
XspI	CTAG	1 cut(s)	543
ZraI	GACGTC	3 cut(s)	219, 265, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.