Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013557

Physical Location & Seq

Genomic Coordinates Forward (+)

28807365 .. 28808687

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1189100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGTAGAGAAAAGTACTACGGTGGGAGCTAGCACCATGGATAGAGATTTTCCAGCCACTGTGAAGCTCGGAAATGGCAGGACTATTACCGGGGTTTCGCTCTACAGGGGAAGGATGATGCTGTCAACAAACAAGCAATACCCTGTTGTGTATTTGGGAAGCAATTCAACTAGTCCTAATCCGAGCTCGCTGTGTTTGGAGGGGACGTTGGATCGCCGAGTTGTGGCCGGAAAGATTGTGATTTGCGACCGTGGGATTAGTCCTAGAGTGCAGAAGGGAGAGGTGGTGAAAGAAGCCGGAGGAGTTGGGATGATCTTGGCAAACACAGCTGCAAACGGAGAGGAGCTTGTGGCGGATTGCCACCTTGTTCCGGCGGTTCCTGTGGGAGAGAACGAAGCAAAGGGAATCAAGCATTATGCTTCAACAAGCCCGAGAGCCACCGCAACTCTAACATTTCTTGGAACTAGAGTTGGGGTTAGACCGTCGCCTGTGGTGGCAGCGTTTTCATCCAGAGGGCCAAATCTGGTAAGCCTTGAGATTCTCAAGCCGGATATGGTGGCACCAGGAGTGAACATCCTCGCCGCTTGGACAGGCGCATTAGGCCCGTCCAGCTTGCCAGCAGATCGTAGAAGGGTGAAGTTCAATATACTGTCCGGGACTTCAATGTCCTGCCCCCATGTGAGCGGCATTGCCGCTCTGCTCAAGGCAAGGCACCCGGATTGGAGTCCGGCGGCAATAAAGTCCGCCTTGATGACAACCGCTTATGTCCACGACAACACGCGAAAGCCTCTACAAGACTCCTCAGCAGCTTCAATTTCAACCCCGTACGATCACGGTGCAGGGCACATAAACCCGGGGAGGGCTCTTGACCCGGGATTGATTTACGACATTGAGGCGCATGACTATCTTGAATTCCTCTGCACACAAAGGCTAACACCAACACAGCTCAAAGTTTTTACCAAGTACTCAAACAGAAGTTGCAAGAACAATCTAGCCAGTCCCGGGGACTTGAACTATCCGGCACTCTCGGTTGTGTTCCCGGAGAGAACAAATGTTTCTGTTTTGACACTTCACAGAACTGTCACTAACGTTGGCCCTGCGGTTTCGAATTACCACGCCATTGTTTCACCGTTCAAAGGTGCTTATGTGAAAGTCGAGCCTCGGACGCTGAAATTCACCAAAGCCAATCAGAAGCTGTCATACAAAATCATCTTCACTACGAAATCCCGGCAGGCAGTCCCGGAGTTCGGCGGGTTGGTGTGGAAGGATGGAGTGCACAGGGTGAGAAGCCCCATTGTTGTAGTGTGGCTGCCACCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

441

Amino Acids

47.23

Weight (kDa)

9.77

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	46 - 134	6.5e-12	PA domain
Peptidase_S8	PF00082	57 - 260	1.7e-21	Subtilase family
fn3_6	PF17766	336 - 434	1.7e-27	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51750
fragaria_vesca	FvH4_7g28501
malus_domestica	MD01G1188800.v1.1 MD01G1189100.v1.1 MD01G1189900.v1.1 MD01G1190400.v1.1
prunus_persica	Prupe.2G285500_v2.0.a1
pyrus_communis	pycom01g20050
rosa_chinensis	RchiOBHm_Chr1g0375891
rosa_laevigata	RLG00000026646
rosa_multiflora	Rmu_sc0001943.1_g000010
rosa_roxburghii	Rroxscaffold_4G00282550
rosa_rugosa	Rorug01G0392200
rosa_samantha	Rh1AG404100 Rh1BG367500 Rh1CG380300 Rh1DG397500
rosa_wichuraiana	Rw0G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	664
AccB1I	GGYRCC	2 cut(s)	559, 711
AccBSI	CCGCTC	2 cut(s)	684, 695
AccII	CGCG	1 cut(s)	781
AclI	AACGTT	1 cut(s)	1089
AclWI	GGATC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	911, 1172
AdeI	CACNNNGTG	1 cut(s)	1282
AfaI	GTAC	3 cut(s)	16, 827, 965
AfiI	CCNNNNNNNGG	6 cut(s)	223, 370, 859, 1002, 1136, 1247
AgsI	TTSAA	9 cut(s)	168, 423, 643, 663, 813, 819, 911, 1012, 1135
AhlI	ACTAGT	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	9 cut(s)	29, 67, 186, 329, 346, 612, 809, 946, 1195
AluI	AGCT	9 cut(s)	29, 67, 186, 329, 346, 612, 809, 946, 1195
Alw21I	GWGCWC	2 cut(s)	188, 1278
Alw44I	GTGCAC	1 cut(s)	1274
AlwI	GGATC	1 cut(s)	219
AlwNI	CAGNNNCTG	2 cut(s)	59, 1195
Ama87I	CYCGRG	4 cut(s)	430, 853, 871, 1001
AoxI	GGCC	4 cut(s)	225, 515, 601, 1093
ApaLI	GTGCAC	1 cut(s)	1274
ApeKI	GCWGC	4 cut(s)	329, 497, 806, 1309
ApoI	RAATTY	2 cut(s)	911, 1172
Asp700I	GAANNNNTTC	1 cut(s)	163
AspLEI	GCGC	2 cut(s)	596, 898
AspS9I	GGNCC	3 cut(s)	515, 602, 1094
AsuHPI	GGTGA	5 cut(s)	298, 646, 1119, 1168, 1294
AsuII	TTCGAA	1 cut(s)	1106
AsuNHI	GCTAGC	1 cut(s)	29
AvaI	CYCGRG	4 cut(s)	430, 853, 871, 1001
BaeGI	GKGCMC	2 cut(s)	846, 1278
BanI	GGYRCC	2 cut(s)	559, 711
BanII	GRGCYC	2 cut(s)	188, 865
BarI	GAAGNNNNNNTAC	2 cut(s)	1184, 1216
Bbv12I	GWGCWC	2 cut(s)	188, 1278
BbvCI	CCTCAGC	1 cut(s)	802
BbvI	GCAGC	4 cut(s)	316, 509, 818, 1296
BccI	CCATC	1 cut(s)	1262
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	1 cut(s)	564
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	5 cut(s)	30, 171, 264, 465, 992
BfmI	CTRYAG	1 cut(s)	103
BisI	GCNGC	8 cut(s)	330, 498, 582, 685, 693, 732, 807, 1310
BlsI	GCNGC	8 cut(s)	331, 499, 583, 686, 694, 733, 808, 1311
BmcAI	AGTACT	2 cut(s)	16, 965
BmeT110I	CYCGRG	4 cut(s)	430, 853, 871, 1001
BmgT120I	GGNCC	3 cut(s)	515, 602, 1094
BmiI	GGNNCC	3 cut(s)	378, 561, 713
BmsI	GCATC	1 cut(s)	108
BmtI	GCTAGC	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	802
Bpu14I	TTCGAA	1 cut(s)	1106
BpuEI	CTTGAG	3 cut(s)	527, 554, 686
BsaJI	CCNNGG	9 cut(s)	36, 90, 250, 853, 854, 871, 1001, 1002, 1160
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 270, 300
Bsc4I	CCNNNNNNNGG	6 cut(s)	223, 370, 859, 1002, 1136, 1247
Bse1I	ACTGG	1 cut(s)	996
Bse3DI	GCAATG	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	9 cut(s)	36, 90, 250, 853, 854, 871, 1001, 1002, 1160
BseGI	GGATG	5 cut(s)	120, 315, 506, 573, 1273
BseLI	CCNNNNNNNGG	6 cut(s)	223, 370, 859, 1002, 1136, 1247
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	1 cut(s)	816
BseNI	ACTGG	1 cut(s)	996
BseRI	GAGGAG	3 cut(s)	315, 356, 790
BseSI	GKGCMC	2 cut(s)	846, 1278
BseXI	GCAGC	4 cut(s)	316, 509, 818, 1296
BsgI	GTGCAG	3 cut(s)	290, 858, 904
Bsh1236I	CGCG	1 cut(s)	781
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	4 cut(s)	227, 517, 603, 1095
BshNI	GGYRCC	2 cut(s)	559, 711
BsiEI	CGRYCG	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	188, 1278
BsiHKCI	CYCGRG	4 cut(s)	430, 853, 871, 1001
BsiWI	CGTACG	1 cut(s)	825
BslFI	GGGAC	5 cut(s)	217, 670, 984, 1019, 1223
BslI	CCNNNNNNNGG	6 cut(s)	223, 370, 859, 1002, 1136, 1247
BsmFI	GGGAC	5 cut(s)	217, 670, 984, 1019, 1223
BsnI	GGCC	4 cut(s)	227, 517, 603, 1095
BsoBI	CYCGRG	4 cut(s)	430, 853, 871, 1001
Bsp119I	TTCGAA	1 cut(s)	1106
Bsp1286I	GDGCHC	4 cut(s)	188, 846, 865, 1278
Bsp143I	GATC	4 cut(s)	211, 312, 622, 829
Bsp19I	CCATGG	1 cut(s)	36
BspANI	GGCC	4 cut(s)	227, 517, 603, 1095
BspCNI	CTCAG	1 cut(s)	815
BspFNI	CGCG	1 cut(s)	781
BspLI	GGNNCC	3 cut(s)	378, 561, 713
BspOI	GCTAGC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	219
BspT104I	TTCGAA	1 cut(s)	1106
BspT107I	GGYRCC	2 cut(s)	559, 711
BsrBI	CCGCTC	2 cut(s)	684, 695
BsrDI	GCAATG	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	996
BssECI	CCNNGG	9 cut(s)	36, 90, 250, 853, 854, 871, 1001, 1002, 1160
BssMI	GATC	4 cut(s)	211, 312, 622, 829
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	8 cut(s)	22, 61, 251, 483, 651, 836, 1081, 1131
BstBI	TTCGAA	1 cut(s)	1106
BstC8I	GCNNGC	5 cut(s)	31, 188, 614, 618, 1233
BstDEI	CTNAG	1 cut(s)	802
BstDSI	CCRYGG	2 cut(s)	36, 250
BstF5I	GGATG	5 cut(s)	120, 315, 506, 573, 1273
BstFNI	CGCG	1 cut(s)	781
BstHHI	GCGC	2 cut(s)	596, 898
BstKTI	GATC	4 cut(s)	214, 315, 625, 832
BstMBI	GATC	4 cut(s)	211, 312, 622, 829
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 600, 609, 1165
BstNI	CCWGG	1 cut(s)	564
BstSFI	CTRYAG	1 cut(s)	103
BstSLI	GKGCMC	2 cut(s)	846, 1278
BstUI	CGCG	1 cut(s)	781
BstV1I	GCAGC	4 cut(s)	316, 509, 818, 1296
BsuRI	GGCC	4 cut(s)	227, 517, 603, 1095
BtgI	CCRYGG	2 cut(s)	36, 250
BtsCI	GGATG	5 cut(s)	120, 315, 506, 573, 1273
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	5 cut(s)	31, 188, 614, 618, 1233
CaiI	CAGNNNCTG	2 cut(s)	59, 1195
CfoI	GCGC	2 cut(s)	596, 898
Cfr13I	GGNCC	3 cut(s)	515, 602, 1094
Cfr9I	CCCGGG	3 cut(s)	853, 871, 1001
CseI	GACGC	1 cut(s)	1174
Csp6I	GTAC	3 cut(s)	15, 826, 964
CviAII	CATG	3 cut(s)	37, 677, 899
CviQI	GTAC	3 cut(s)	15, 826, 964
DdeI	CTNAG	1 cut(s)	802
DpnI	GATC	4 cut(s)	213, 314, 624, 831
DpnII	GATC	4 cut(s)	211, 312, 622, 829
DraIII	CACNNNGTG	1 cut(s)	1282
DrdI	GACNNNNNNGTC	1 cut(s)	664
DseDI	GACNNNNNNGTC	1 cut(s)	664
EaeI	YGGCCR	1 cut(s)	225
EciI	GGCGGA	2 cut(s)	368, 733
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	2 cut(s)	188, 865
Eco53kI	GAGCTC	1 cut(s)	186
Eco88I	CYCGRG	4 cut(s)	430, 853, 871, 1001
EcoICRI	GAGCTC	1 cut(s)	186
EcoRI	GAATTC	1 cut(s)	911
EcoRII	CCWGG	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	188, 865
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	3 cut(s)	40, 680, 902
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FaqI	GGGAC	5 cut(s)	217, 670, 984, 1019, 1223
FatI	CATG	3 cut(s)	36, 676, 898
FauI	CCCGC	1 cut(s)	1244
Fnu4HI	GCNGC	8 cut(s)	330, 498, 582, 685, 693, 732, 807, 1310
FokI	GGATG	5 cut(s)	127, 322, 493, 560, 1280
FriOI	GRGCYC	2 cut(s)	188, 865
Fsp4HI	GCNGC	8 cut(s)	330, 498, 582, 685, 693, 732, 807, 1310
FspBI	CTAG	5 cut(s)	30, 171, 264, 465, 992
GlaI	GCGC	2 cut(s)	595, 897
GluI	GCNGC	8 cut(s)	330, 498, 582, 685, 693, 732, 807, 1310
HaeIII	GGCC	4 cut(s)	227, 517, 603, 1095
HgaI	GACGC	1 cut(s)	1174
HhaI	GCGC	2 cut(s)	596, 898
Hin1II	CATG	3 cut(s)	40, 680, 902
Hin6I	GCGC	2 cut(s)	594, 896
HinP1I	GCGC	2 cut(s)	594, 896
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	4 cut(s)	405, 538, 724, 797
HphI	GGTGA	5 cut(s)	298, 646, 1119, 1168, 1294
Hpy166II	GTNNAC	4 cut(s)	126, 571, 769, 1276
Hpy188I	TCNGA	4 cut(s)	71, 183, 1164, 1191
Hpy188III	TCNNGA	3 cut(s)	510, 866, 908
Hpy8I	GTNNAC	4 cut(s)	126, 571, 769, 1276
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	4 cut(s)	105, 268, 624, 1258
HpyCH4III	ACNGT	8 cut(s)	22, 61, 251, 483, 651, 836, 1081, 1131
HpyCH4IV	ACGT	2 cut(s)	206, 1089
HpyCH4V	TGCA	6 cut(s)	271, 332, 839, 921, 981, 1276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 600, 609, 1165
HpyF3I	CTNAG	1 cut(s)	802
HpySE526I	ACGT	2 cut(s)	206, 1089
Hsp92II	CATG	3 cut(s)	40, 680, 902
HspAI	GCGC	2 cut(s)	594, 896
Kzo9I	GATC	4 cut(s)	211, 312, 622, 829
LmnI	GCTCC	2 cut(s)	26, 343
Lsp1109I	GCAGC	4 cut(s)	316, 509, 818, 1296
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	5 cut(s)	30, 171, 264, 465, 992
MaeII	ACGT	2 cut(s)	206, 1089
MaeIII	GTNAC	1 cut(s)	1081
MalI	GATC	4 cut(s)	213, 314, 624, 831
MbiI	CCGCTC	2 cut(s)	684, 695
MboI	GATC	4 cut(s)	211, 312, 622, 829
MboII	GAAGA	1 cut(s)	1204
MhlI	GDGCHC	4 cut(s)	188, 846, 865, 1278
MluCI	AATT	5 cut(s)	163, 813, 911, 1108, 1172
MlyI	GAGTC	2 cut(s)	733, 791
MmeI	TCCRAC	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	163
MspA1I	CMGCKG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	781
MwoI	GCNNNNNNNGC	4 cut(s)	326, 600, 609, 1165
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	4 cut(s)	211, 312, 622, 829
NheI	GCTAGC	1 cut(s)	29
NlaIII	CATG	3 cut(s)	40, 680, 902
NlaIV	GGNNCC	3 cut(s)	378, 561, 713
NmeAIII	GCCGAG	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	1081
NspV	TTCGAA	1 cut(s)	1106
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	405, 538
Pfl23II	CGTACG	1 cut(s)	825
PfoI	TCCNGGA	3 cut(s)	653, 1038, 1239
PkrI	GCNGC	8 cut(s)	331, 499, 583, 686, 694, 733, 808, 1311
PleI	GAGTC	2 cut(s)	732, 791
PpsI	GAGTC	2 cut(s)	732, 791
Psp124BI	GAGCTC	1 cut(s)	188
Psp1406I	AACGTT	1 cut(s)	1089
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspLI	CGTACG	1 cut(s)	825
PspN4I	GGNNCC	3 cut(s)	378, 561, 713
PspPI	GGNCC	3 cut(s)	515, 602, 1094
PstNI	CAGNNNCTG	2 cut(s)	59, 1195
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	3 cut(s)	16, 827, 965
RsaNI	GTAC	3 cut(s)	15, 826, 964
SacI	GAGCTC	1 cut(s)	188
SatI	GCNGC	8 cut(s)	330, 498, 582, 685, 693, 732, 807, 1310
Sau3AI	GATC	4 cut(s)	211, 312, 622, 829
Sau96I	GGNCC	3 cut(s)	515, 602, 1094
ScaI	AGTACT	2 cut(s)	16, 965
SchI	GAGTC	2 cut(s)	733, 791
SduI	GDGCHC	4 cut(s)	188, 846, 865, 1278
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	103
SfuI	TTCGAA	1 cut(s)	1106
SmaI	CCCGGG	3 cut(s)	855, 873, 1003
SmlI	CTYRAG	3 cut(s)	533, 542, 701
SmoI	CTYRAG	3 cut(s)	533, 542, 701
SpeI	ACTAGT	1 cut(s)	170
Sse9I	AATT	5 cut(s)	163, 813, 911, 1108, 1172
SspMI	CTAG	5 cut(s)	30, 171, 264, 465, 992
SstI	GAGCTC	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	8 cut(s)	22, 61, 251, 483, 651, 836, 1081, 1131
TaiI	ACGT	2 cut(s)	209, 1092
TaqI	TCGA	2 cut(s)	1106, 1155
TasI	AATT	5 cut(s)	163, 813, 911, 1108, 1172
TatI	WGTACW	2 cut(s)	14, 963
TauI	GCSGC	4 cut(s)	584, 687, 695, 734
TfiI	GAWTC	2 cut(s)	405, 538
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	1081
TseI	GCWGC	4 cut(s)	329, 497, 806, 1309
Tsp45I	GTSAC	1 cut(s)	1081
TspDTI	ATGAA	1 cut(s)	495
TspGWI	ACGGA	1 cut(s)	351
TspMI	CCCGGG	3 cut(s)	853, 871, 1001
TspRI	CASTG	1 cut(s)	64
VneI	GTGCAC	1 cut(s)	1274
XapI	RAATTY	2 cut(s)	911, 1172
XmaI	CCCGGG	3 cut(s)	853, 871, 1001
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	5 cut(s)	30, 171, 264, 465, 992
ZrmI	AGTACT	2 cut(s)	16, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.