Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013557

Physical Location & Seq

Genomic Coordinates Forward (+)

50249624 .. 50251189

Gene Structure 1566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0392200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGAAAGAAACCATTAGCTGTAGACTCACCAATCAACTTCCTCTCAAAGGTTTCATACCAAACACTTCATCAAGCTACTGGCGGATTCTCTCAGAGCACTCTAATTGGATCAGGCGGTTTTGGCTCTGTATACAAAGGGATTCTTGATCAGGAAGAAAACAGCGTGGTTGCCGTAAAGGTCATCAACCCTCAAGAGAGAGGAGCTTCCAAGAGTTTCACTGCAGAATGCAATGCACTAAAAAATATCCGGCACAGGAATCTTGTCAAGATCTTAACTTGCTGCTCCAGCATGGATTACAATGGTACTGAATTCAAAGCTCTAATCTTTGAATATATGTCAAATGGAAGTTTAGAGGAGTGGCTGCACAGAGGAAACCGATCAATGAGTTTGACCCTTCTTCAAAGATTGAATATTGTTGTTGATGTGGCTTCTGCATTATGTTATCTTCATGACCATTGTGAACCTCCAATCATTCACTGCGACATGAAGCCAAGCAATGTTCTTATTGACGATGATATGGTTGCTCATGTAGGTGATTTTGGCTTAGCCAGACTCATCTCAACCACCACAGAGTCCTCACAAACTCAAAGTAGCACAATTGGAATAAAGGGAACAATCGGCTATGCTGCTCCAGAGTACGCAAGTGGTGTAGAGGCATCAAGACAAGGAGATGTATATAGTTATGGGATTCTTGTATTGGAAATGTTCACAGGAAGAAGACCCACCGACGAAATGTTCAAAGACGGCTTGAAACTCCACGACTTTGTTAAGATGGCATTACCAGGAAGGCTTGTGCAGACTGTGGACGCTGCTCTTCTCGCCACCCTAGAAGAGACAGCTCCTACAGCAACTGCAGGAAATGAAGTGAACTACATGCTTAGAGGACTGGCGTGCTCGGAGGAATCACCAGAGAATAGAATGTGTATGGAGGATGTCCTCAGGGACCTCCACCGTATACAAATTGCTTACAATGGTGTTGTGATCAATCGAGAGAGACCAAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

336

Amino Acids

37.01

Weight (kDa)

5.88

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 260	1.8e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	33 - 248	4.3e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51750
fragaria_vesca	FvH4_7g28501
malus_domestica	MD01G1188800.v1.1 MD01G1189100.v1.1 MD01G1189900.v1.1 MD01G1190400.v1.1
prunus_persica	Prupe.2G285500_v2.0.a1
pyrus_communis	pycom01g20050
rosa_chinensis	RchiOBHm_Chr1g0375891
rosa_laevigata	RLG00000026646
rosa_multiflora	Rmu_sc0001943.1_g000010
rosa_roxburghii	Rroxscaffold_4G00282550
rosa_rugosa	Rorug01G0392200
rosa_samantha	Rh1AG404100 Rh1BG367500 Rh1CG380300 Rh1DG397500
rosa_wichuraiana	Rw0G000960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	24, 132, 958
AciI	CCGC	2 cut(s)	84, 117
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	2 cut(s)	307, 641
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	6 cut(s)	316, 332, 404, 412, 742, 754
AjnI	CCWGG	1 cut(s)	784
AluBI	AGCT	6 cut(s)	20, 77, 206, 320, 842, 1008
AluI	AGCT	6 cut(s)	20, 77, 206, 320, 842, 1008
Alw21I	GWGCWC	2 cut(s)	101, 899
Alw26I	GTCTC	2 cut(s)	830, 991
AlwI	GGATC	1 cut(s)	118
AlwNI	CAGNNNCTG	1 cut(s)	854
ApeKI	GCWGC	4 cut(s)	282, 364, 629, 812
ApoI	RAATTY	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	946
AsuHPI	GGTGA	3 cut(s)	21, 548, 900
AvaII	GGWCC	1 cut(s)	946
AxyI	CCTNAGG	1 cut(s)	941
BbsI	GAAGAC	1 cut(s)	727
Bbv12I	GWGCWC	2 cut(s)	101, 899
BbvI	GCAGC	4 cut(s)	269, 351, 616, 799
BccI	CCATC	1 cut(s)	769
BceAI	ACGGC	2 cut(s)	158, 763
BciT130I	CCWGG	1 cut(s)	786
BclI	TGATCA	2 cut(s)	148, 984
BcoDI	GTCTC	2 cut(s)	830, 991
BfaI	CTAG	1 cut(s)	830
BfmI	CTRYAG	4 cut(s)	21, 222, 846, 855
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	4 cut(s)	283, 365, 630, 813
BlpI	GCTNAGC	1 cut(s)	547
BlsI	GCNGC	4 cut(s)	284, 366, 631, 814
Bme1390I	CCNGG	1 cut(s)	786
Bme18I	GGWCC	1 cut(s)	946
BmgT120I	GGNCC	1 cut(s)	946
BmiI	GGNNCC	1 cut(s)	947
BmrFI	CCNGG	1 cut(s)	786
BmsI	GCATC	1 cut(s)	668
BpiI	GAAGAC	1 cut(s)	727
BpmI	CTGGAG	2 cut(s)	271, 618
Bpu1102I	GCTNAGC	1 cut(s)	547
BpuEI	CTTGAG	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	991
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	85, 894
Bse21I	CCTNAGG	1 cut(s)	941
Bse3DI	GCAATG	2 cut(s)	238, 505
BseBI	CCWGG	1 cut(s)	786
BseGI	GGATG	1 cut(s)	940
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	2 cut(s)	238, 505
BseMII	CTCAG	2 cut(s)	107, 955
BseNI	ACTGG	2 cut(s)	85, 894
BseRI	GAGGAG	2 cut(s)	216, 371
BseXI	GCAGC	4 cut(s)	269, 351, 616, 799
BsgI	GTGCAG	2 cut(s)	350, 818
BsiHKAI	GWGCWC	2 cut(s)	101, 899
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	959
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	830, 991
BsmFI	GGGAC	1 cut(s)	959
BsmI	GAATGC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	991
Bsp1286I	GDGCHC	2 cut(s)	101, 899
Bsp143I	GATC	5 cut(s)	110, 148, 270, 380, 984
Bsp1720I	GCTNAGC	1 cut(s)	547
BspACI	CCGC	2 cut(s)	84, 117
BspCNI	CTCAG	2 cut(s)	106, 954
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	947
BspMAI	CTGCAG	2 cut(s)	226, 859
BspPI	GGATC	1 cut(s)	118
BspQI	GCTCTTC	1 cut(s)	822
BspTNI	GGTCTC	1 cut(s)	991
BsrDI	GCAATG	2 cut(s)	238, 505
BsrI	ACTGG	2 cut(s)	85, 894
BssMI	GATC	5 cut(s)	110, 148, 270, 380, 984
BssNAI	GTATAC	2 cut(s)	133, 959
Bst1107I	GTATAC	2 cut(s)	133, 959
Bst2UI	CCWGG	1 cut(s)	786
Bst4CI	ACNGT	2 cut(s)	805, 956
Bst6I	CTCTTC	2 cut(s)	822, 828
BstC8I	GCNNGC	1 cut(s)	895
BstDEI	CTNAG	4 cut(s)	93, 547, 881, 941
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	940
BstKTI	GATC	5 cut(s)	113, 151, 273, 383, 987
BstMAI	GTCTC	2 cut(s)	830, 991
BstMBI	GATC	5 cut(s)	110, 148, 270, 380, 984
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 288, 821, 848
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	1 cut(s)	880
BstSCI	CCNGG	1 cut(s)	784
BstSFI	CTRYAG	4 cut(s)	21, 222, 846, 855
BstV1I	GCAGC	4 cut(s)	269, 351, 616, 799
BstV2I	GAAGAC	1 cut(s)	727
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BstZ17I	GTATAC	2 cut(s)	133, 959
Bsu36I	CCTNAGG	1 cut(s)	941
BtsCI	GGATG	1 cut(s)	940
BtsI	GCAGTG	2 cut(s)	219, 478
BtsIMutI	CAGTG	2 cut(s)	219, 478
Cac8I	GCNNGC	1 cut(s)	895
CaiI	CAGNNNCTG	1 cut(s)	854
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	946
CseI	GACGC	1 cut(s)	818
Csp6I	GTAC	2 cut(s)	306, 640
CviAII	CATG	5 cut(s)	292, 452, 487, 530, 877
CviQI	GTAC	2 cut(s)	306, 640
DdeI	CTNAG	4 cut(s)	93, 547, 881, 941
DpnI	GATC	5 cut(s)	112, 150, 272, 382, 986
DpnII	GATC	5 cut(s)	110, 148, 270, 380, 984
Eam1104I	CTCTTC	2 cut(s)	822, 828
EarI	CTCTTC	2 cut(s)	822, 828
EciI	GGCGGA	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	991
Eco47I	GGWCC	1 cut(s)	946
Eco81I	CCTNAGG	1 cut(s)	941
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	946
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	784
FaeI	CATG	5 cut(s)	295, 455, 490, 533, 880
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	959
FatI	CATG	5 cut(s)	291, 451, 486, 529, 876
FbaI	TGATCA	2 cut(s)	148, 984
FblI	GTMKAC	3 cut(s)	24, 132, 958
Fnu4HI	GCNGC	4 cut(s)	283, 365, 630, 813
FokI	GGATG	1 cut(s)	947
Fsp4HI	GCNGC	4 cut(s)	283, 365, 630, 813
FspBI	CTAG	1 cut(s)	830
GluI	GCNGC	4 cut(s)	283, 365, 630, 813
GsuI	CTGGAG	2 cut(s)	271, 618
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	818
Hin1II	CATG	5 cut(s)	295, 455, 490, 533, 880
HinfI	GANTC	8 cut(s)	26, 87, 142, 259, 555, 575, 691, 905
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	3 cut(s)	21, 548, 900
Hpy166II	GTNNAC	7 cut(s)	25, 133, 464, 711, 808, 871, 959
Hpy188I	TCNGA	2 cut(s)	96, 901
Hpy188III	TCNNGA	8 cut(s)	146, 152, 194, 268, 452, 635, 663, 992
Hpy8I	GTNNAC	7 cut(s)	25, 133, 464, 711, 808, 871, 959
Hpy99I	CGWCG	1 cut(s)	734
HpyAV	CCTTC	2 cut(s)	407, 783
HpyCH4III	ACNGT	2 cut(s)	805, 956
HpyCH4V	TGCA	7 cut(s)	224, 231, 236, 367, 437, 799, 857
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 288, 821, 848
HpyF3I	CTNAG	4 cut(s)	93, 547, 881, 941
Hsp92II	CATG	5 cut(s)	295, 455, 490, 533, 880
Ksp22I	TGATCA	2 cut(s)	148, 984
Kzo9I	GATC	5 cut(s)	110, 148, 270, 380, 984
LguI	GCTCTTC	1 cut(s)	822
LmnI	GCTCC	4 cut(s)	203, 290, 637, 847
Lsp1109I	GCAGC	4 cut(s)	269, 351, 616, 799
LweI	GCATC	1 cut(s)	668
MaeI	CTAG	1 cut(s)	830
MalI	GATC	5 cut(s)	112, 150, 272, 382, 986
MboI	GATC	5 cut(s)	110, 148, 270, 380, 984
MboII	GAAGA	7 cut(s)	167, 392, 440, 729, 732, 809, 845
MfeI	CAATTG	1 cut(s)	600
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	101, 899
MluCI	AATT	4 cut(s)	105, 311, 600, 963
MlyI	GAGTC	3 cut(s)	20, 549, 584
MseI	TTAA	2 cut(s)	275, 771
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	786
MunI	CAATTG	1 cut(s)	600
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	786
MwoI	GCNNNNNNNGC	4 cut(s)	123, 288, 821, 848
NdeII	GATC	5 cut(s)	110, 148, 270, 380, 984
NlaIII	CATG	5 cut(s)	295, 455, 490, 533, 880
NlaIV	GGNNCC	1 cut(s)	947
NspI	RCATGY	1 cut(s)	880
PagI	TCATGA	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	822
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	5 cut(s)	87, 142, 259, 691, 905
PkrI	GCNGC	4 cut(s)	284, 366, 631, 814
PleI	GAGTC	3 cut(s)	20, 549, 583
PpsI	GAGTC	3 cut(s)	20, 549, 583
PpuMI	RGGWCCY	1 cut(s)	946
Psp5II	RGGWCCY	1 cut(s)	946
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	1 cut(s)	947
PspPI	GGNCC	1 cut(s)	946
PspPPI	RGGWCCY	1 cut(s)	946
PstI	CTGCAG	2 cut(s)	226, 859
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	2 cut(s)	307, 641
RsaNI	GTAC	2 cut(s)	306, 640
RseI	CAYNNNNRTG	1 cut(s)	534
SapI	GCTCTTC	1 cut(s)	822
SaqAI	TTAA	2 cut(s)	275, 771
SatI	GCNGC	4 cut(s)	283, 365, 630, 813
Sau3AI	GATC	5 cut(s)	110, 148, 270, 380, 984
Sau96I	GGNCC	1 cut(s)	946
SchI	GAGTC	3 cut(s)	20, 549, 584
ScrFI	CCNGG	1 cut(s)	786
SduI	GDGCHC	2 cut(s)	101, 899
SfaNI	GCATC	1 cut(s)	668
SfcI	CTRYAG	4 cut(s)	21, 222, 846, 855
SinI	GGWCC	1 cut(s)	946
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	4 cut(s)	105, 311, 600, 963
SsiI	CCGC	2 cut(s)	84, 117
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	1 cut(s)	830
StyD4I	CCNGG	1 cut(s)	784
TaaI	ACNGT	2 cut(s)	805, 956
TaqI	TCGA	1 cut(s)	991
TasI	AATT	4 cut(s)	105, 311, 600, 963
TfiI	GAWTC	5 cut(s)	87, 142, 259, 691, 905
Tru1I	TTAA	2 cut(s)	275, 771
Tru9I	TTAA	2 cut(s)	275, 771
TscAI	CASTG	2 cut(s)	226, 485
TseI	GCWGC	4 cut(s)	282, 364, 629, 812
TspDTI	ATGAA	5 cut(s)	45, 59, 440, 503, 879
TspRI	CASTG	2 cut(s)	226, 485
VpaK11BI	GGWCC	1 cut(s)	946
XagI	CCTNNNNNAGG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	880
XmiI	GTMKAC	3 cut(s)	24, 132, 958
XspI	CTAG	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.