Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006376

Physical Location & Seq

Genomic Coordinates Forward (+)

32562979 .. 32564323

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1239400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAATGCTTCATTTTTCAACTTTGATTTGGTTGTTTTTGAAATTGGGGAATTACCGGGCAATTGGCAGTTAGATGATGAAGATGATCCCCTGCCGCGGGGACATGATTCTGCTGCAGGTGACAGTGGGCAATCATCAGGAAAGAAGAAGAAAGCTTCATTTAAAGAGAAGTCAAGTAAGAAGGGAAAAGAAAATGGGGAGGTGGGGAAGAAGATCAGATGTGAAGAAAATGGTTCAAGGAGAGAGAGAGCAGGCATGAGGAAAGTGGCTCAAGGAAAGACGAAGGGAACAAGAAGACGAGGAGGCGGAGATATTCCCAAGATAGTGCCAATAGTTTTGGTCCTTATGGTGGTGCATGGACTCGGTAGAATATTTGTTGGCCCGTGGACAATAGTTTTGGATGATTTTTTATTAAACTTTAAGCCCTTTTGGTTAAATAACATTTTGGGATGGTTTTTGGTTAAATATTTGTTGGCTCAAACCCTTTTCATTAAAGCTCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000956 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008334 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0010639 GO:0016070 GO:0016071 GO:0016074 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0019439 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033500 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042592 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0045934 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0065008 GO:0070566 GO:0071044 GO:0071050 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

169

Amino Acids

18.76

Weight (kDa)

9.77

Isoelectric Point (pI)

26.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53770
fragaria_vesca	FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190
malus_domestica	MD01G1239400.v1.1 MD03G1226500.v1.1 MD05G1272800.v1.1 MD08G1067800.v1.1 MD10G1025000.v1.1 MD11G1244500.v1.1 MD11G1244600.v1.1
prunus_persica	Prupe.4G182900_v2.0.a1
pyrus_communis	pycom03g17420
rosa_chinensis	RchiOBHm_Chr5g0034001
rosa_laevigata	RLG00000033518
rosa_multiflora	Rmu_sc0012341.1_g000005 Rmu_sc0014753.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046230
rosa_rugosa	Rorug05G0144100
rosa_samantha	Rh5AG235000 Rh5BG235800 Rh5CG265600 Rh5DG242200
rosa_wichuraiana	Rw5G021220 Rw5G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	107
AccII	CGCG	1 cut(s)	97
AciI	CCGC	3 cut(s)	95, 97, 306
AclWI	GGATC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	96, 97, 349
AgsI	TTSAA	3 cut(s)	19, 41, 237
AluBI	AGCT	2 cut(s)	155, 497
AluI	AGCT	2 cut(s)	155, 497
AlwI	GGATC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	113
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
AspS9I	GGNCC	2 cut(s)	340, 380
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	107
BisI	GCNGC	2 cut(s)	95, 114
BlsI	GCNGC	2 cut(s)	96, 115
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	340, 380
BmrFI	CCNGG	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	95, 383
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 97, 349
BseDI	CCNNGG	2 cut(s)	95, 383
BseGI	GGATG	2 cut(s)	406, 455
BseLI	CCNNNNNNNGG	3 cut(s)	96, 97, 349
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	3 cut(s)	96, 97, 349
BsmFI	GGGAC	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	85, 213
BspACI	CCGC	3 cut(s)	95, 97, 306
BspANI	GGCC	1 cut(s)	381
BspFNI	CGCG	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	107
BspPI	GGATC	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	95, 383
BssMI	GATC	2 cut(s)	85, 213
Bst4CI	ACNGT	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	253
BstDSI	CCRYGG	2 cut(s)	95, 383
BstF5I	GGATG	2 cut(s)	406, 455
BstFNI	CGCG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	88, 216
BstMBI	GATC	2 cut(s)	85, 213
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	381
BtgI	CCRYGG	2 cut(s)	95, 383
BtsCI	GGATG	2 cut(s)	406, 455
BtsIMutI	CAGTG	1 cut(s)	130
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	340, 380
Cfr42I	CCGCGG	1 cut(s)	98
CviAII	CATG	3 cut(s)	104, 256, 356
CviJI	RGCY	6 cut(s)	155, 269, 381, 424, 476, 497
CviKI_1	RGCY	6 cut(s)	155, 269, 381, 424, 476, 497
DpnI	GATC	2 cut(s)	87, 215
DpnII	GATC	2 cut(s)	85, 213
DraI	TTTAAA	1 cut(s)	163
EciI	GGCGGA	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	340
FaeI	CATG	3 cut(s)	107, 259, 359
FaiI	YATR	4 cut(s)	105, 257, 347, 357
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	3 cut(s)	103, 255, 355
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	95, 114
FokI	GGATG	2 cut(s)	413, 462
Fsp4HI	GCNGC	2 cut(s)	95, 114
GluI	GCNGC	2 cut(s)	95, 114
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	3 cut(s)	107, 259, 359
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	2 cut(s)	107, 360
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	1 cut(s)	138
Hpy8I	GTNNAC	1 cut(s)	387
HpyAV	CCTTC	2 cut(s)	175, 277
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	2 cut(s)	116, 355
Hsp92II	CATG	3 cut(s)	107, 259, 359
KspI	CCGCGG	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	85, 213
LmnI	GCTCC	1 cut(s)	502
LpnPI	CCDG	5 cut(s)	69, 102, 104, 123, 237
Lsp1109I	GCAGC	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	87, 215
MboI	GATC	2 cut(s)	85, 213
MboII	GAAGA	7 cut(s)	92, 157, 160, 220, 223, 236, 306
MfeI	CAATTG	1 cut(s)	61
MluCI	AATT	3 cut(s)	42, 50, 61
MlyI	GAGTC	1 cut(s)	354
MnlI	CCTC	4 cut(s)	193, 252, 293, 296
MseI	TTAA	7 cut(s)	162, 413, 420, 434, 462, 492, 505
MspA1I	CMGCKG	1 cut(s)	97
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	57
MunI	CAATTG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	10
MvnI	CGCG	1 cut(s)	97
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	85, 213
NlaIII	CATG	3 cut(s)	107, 259, 359
NmuCI	GTSAC	1 cut(s)	119
PaqCI	CACCTGC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	96, 115
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	340, 380
PstI	CTGCAG	1 cut(s)	118
SacII	CCGCGG	1 cut(s)	98
SaqAI	TTAA	7 cut(s)	162, 413, 420, 434, 462, 492, 505
SatI	GCNGC	2 cut(s)	95, 114
Sau3AI	GATC	2 cut(s)	85, 213
Sau96I	GGNCC	2 cut(s)	340, 380
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	4 cut(s)	121, 157, 204, 499
SfcI	CTRYAG	1 cut(s)	114
Sfr303I	CCGCGG	1 cut(s)	98
SgrBI	CCGCGG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	3 cut(s)	42, 50, 61
SsiI	CCGC	3 cut(s)	95, 97, 306
SspI	AATATT	2 cut(s)	372, 467
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	125
TasI	AATT	3 cut(s)	42, 50, 61
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	7 cut(s)	162, 413, 420, 434, 462, 492, 505
Tru9I	TTAA	7 cut(s)	162, 413, 420, 434, 462, 492, 505
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	4 cut(s)	17, 93, 147, 478
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.