Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006376

Physical Location & Seq

Genomic Coordinates Forward (+)

35533410 .. 35534968

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1244500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGGAGCCACCGACACAAAGCTTTCTCTACGAAACCTTACCCGCCCTCTCTCTTCCCACCCTCAACCAATCTCCGCCGCCGCCCGATGACCTCGAGCCCTACTCTGTTTTCCGCAACGAAATTACTCTCTCCACTCCCCAATGCGCTCCGGTCGACACCGCCGCCCCCGATTTCTTCTCCCTCGACGTCACCGCCGATGAACCTGACCCAATTCTTTCCTCCTTGTCTTCTGTCCGCCTAGCGGAGCCATGGACGCCGCTTTACCAATCCGAGCCGACGACGCCGGCTCTTGAAGTCGAGCCGAAGCTAGAGAGCGGGTGGTTTCGTGGCCATTGTAAATTCAAGAGCCCTATGCTTCAGCTTCATAAAGAGATAGTGGATTTTTGTGATTTTCTGTCTCCAACCCCAGAAGAACAAGAGTCACGCAGTGCAGCAGTACAACGTGTCTCTGACCTAATCAAATATATATTTCCTCGATCCAAGGTACTGTTTTTTTCCTACGTATTGGTGAGTGCGAATGTGCAGGGTGCAGTATCTAAGTGGCCTCCTTTGCGGCCTTTATGTTTGATTTTGAAAGTCTTTTTACAACAGAGAGAACTAAACGAGGTATACTCTGGTGGATTAGGTTCCTATGCCCTCCTTACAATCAGTGGCGGATCCACAGTGGGGTCATTGGGGTCGCGCGACCCCTTGGAAGCCATGGAAGCCACCTTAGAGACCCCTTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000956 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008334 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0010639 GO:0016070 GO:0016071 GO:0016074 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0019439 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033500 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042592 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0045934 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0065008 GO:0070566 GO:0071044 GO:0071050 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

245

Amino Acids

27.01

Weight (kDa)

4.52

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53770
fragaria_vesca	FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190
malus_domestica	MD01G1239400.v1.1 MD03G1226500.v1.1 MD05G1272800.v1.1 MD08G1067800.v1.1 MD10G1025000.v1.1 MD11G1244500.v1.1 MD11G1244600.v1.1
prunus_persica	Prupe.4G182900_v2.0.a1
pyrus_communis	pycom03g17420
rosa_chinensis	RchiOBHm_Chr5g0034001
rosa_laevigata	RLG00000033518
rosa_multiflora	Rmu_sc0012341.1_g000005 Rmu_sc0014753.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046230
rosa_rugosa	Rorug05G0144100
rosa_samantha	Rh5AG235000 Rh5BG235800 Rh5CG265600 Rh5DG242200
rosa_wichuraiana	Rw5G021220 Rw5G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	192
AccBSI	CCGCTC	1 cut(s)	318
AccI	GTMKAC	2 cut(s)	156, 612
AccII	CGCG	2 cut(s)	685, 687
AclWI	GGATC	3 cut(s)	474, 654, 667
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	3 cut(s)	189, 257, 284
AdeI	CACNNNGTG	1 cut(s)	431
AfaI	GTAC	2 cut(s)	441, 489
AfiI	CCNNNNNNNGG	2 cut(s)	244, 669
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	3 cut(s)	296, 346, 577
AluBI	AGCT	4 cut(s)	24, 310, 364, 732
AluI	AGCT	4 cut(s)	24, 310, 364, 732
Alw26I	GTCTC	3 cut(s)	405, 454, 713
AlwI	GGATC	3 cut(s)	474, 654, 667
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	3 cut(s)	331, 545, 557
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	149, 687
AsuHPI	GGTGA	2 cut(s)	184, 523
AvaI	CYCGRG	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	333
BamHI	GGATCC	1 cut(s)	659
BanII	GRGCYC	2 cut(s)	102, 353
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	446
BcoDI	GTCTC	3 cut(s)	405, 454, 713
BfaI	CTAG	2 cut(s)	242, 311
BisI	GCNGC	6 cut(s)	80, 83, 165, 260, 435, 557
BlsI	GCNGC	6 cut(s)	81, 84, 166, 261, 436, 558
BmeT110I	CYCGRG	1 cut(s)	95
BmiI	GGNNCC	4 cut(s)	9, 249, 631, 661
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	4 cut(s)	89, 121, 599, 631
BsaAI	YACGTR	1 cut(s)	505
BsaHI	GRCGYC	3 cut(s)	189, 257, 284
BsaI	GGTCTC	1 cut(s)	713
BsaJI	CCNNGG	5 cut(s)	251, 483, 693, 702, 725
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 669
Bse118I	RCCGGY	1 cut(s)	286
BseDI	CCNNGG	5 cut(s)	251, 483, 693, 702, 725
BseLI	CCNNNNNNNGG	2 cut(s)	244, 669
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	446
BsgI	GTGCAG	3 cut(s)	453, 545, 552
Bsh1236I	CGCG	2 cut(s)	685, 687
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	333, 547, 559
BsiEI	CGRYCG	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	152, 287
BslI	CCNNNNNNNGG	2 cut(s)	244, 669
BsmAI	GTCTC	3 cut(s)	405, 454, 713
BsnI	GGCC	3 cut(s)	333, 547, 559
Bso31I	GGTCTC	1 cut(s)	713
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	102, 353
Bsp143I	GATC	2 cut(s)	479, 659
Bsp19I	CCATGG	2 cut(s)	251, 702
BspANI	GGCC	3 cut(s)	333, 547, 559
BspFNI	CGCG	2 cut(s)	685, 687
BspLI	GGNNCC	4 cut(s)	9, 249, 631, 661
BspPI	GGATC	3 cut(s)	474, 654, 667
BspTNI	GGTCTC	1 cut(s)	713
BsrBI	CCGCTC	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	5 cut(s)	251, 483, 693, 702, 725
BssMI	GATC	2 cut(s)	479, 659
BssNAI	GTATAC	1 cut(s)	613
BssNI	GRCGYC	3 cut(s)	189, 257, 284
BssT1I	CCWWGG	5 cut(s)	251, 483, 693, 702, 725
Bst1107I	GTATAC	1 cut(s)	613
Bst4CI	ACNGT	2 cut(s)	492, 667
Bst6I	CTCTTC	1 cut(s)	60
BstACI	GRCGYC	3 cut(s)	189, 257, 284
BstBAI	YACGTR	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	2 cut(s)	540, 715
BstDSI	CCRYGG	2 cut(s)	251, 702
BstFNI	CGCG	2 cut(s)	685, 687
BstHHI	GCGC	2 cut(s)	149, 687
BstKTI	GATC	2 cut(s)	482, 662
BstMAI	GTCTC	3 cut(s)	405, 454, 713
BstMBI	GATC	2 cut(s)	479, 659
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 283, 553, 707
BstSNI	TACGTA	1 cut(s)	505
BstUI	CGCG	2 cut(s)	685, 687
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BstZ17I	GTATAC	1 cut(s)	613
BsuRI	GGCC	3 cut(s)	333, 547, 559
BtgI	CCRYGG	2 cut(s)	251, 702
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	3 cut(s)	436, 658, 672
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	2 cut(s)	149, 687
Cfr10I	RCCGGY	1 cut(s)	286
CseI	GACGC	2 cut(s)	265, 292
Csp6I	GTAC	2 cut(s)	440, 488
CviAII	CATG	2 cut(s)	252, 703
CviQI	GTAC	2 cut(s)	440, 488
DdeI	CTNAG	2 cut(s)	540, 715
DpnI	GATC	2 cut(s)	481, 661
DpnII	GATC	2 cut(s)	479, 659
DraIII	CACNNNGTG	1 cut(s)	431
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	3 cut(s)	66, 227, 672
Eco105I	TACGTA	1 cut(s)	505
Eco130I	CCWWGG	5 cut(s)	251, 483, 693, 702, 725
Eco24I	GRGCYC	2 cut(s)	102, 353
Eco31I	GGTCTC	1 cut(s)	713
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	95
EcoT14I	CCWWGG	5 cut(s)	251, 483, 693, 702, 725
EcoT38I	GRGCYC	2 cut(s)	102, 353
ErhI	CCWWGG	5 cut(s)	251, 483, 693, 702, 725
FaeI	CATG	2 cut(s)	255, 706
FaiI	YATR	9 cut(s)	253, 356, 369, 468, 470, 565, 613, 636, 704
FatI	CATG	2 cut(s)	251, 702
FauI	CCCGC	2 cut(s)	52, 311
FblI	GTMKAC	2 cut(s)	156, 612
Fnu4HI	GCNGC	6 cut(s)	80, 83, 165, 260, 435, 557
FriOI	GRGCYC	2 cut(s)	102, 353
Fsp4HI	GCNGC	6 cut(s)	80, 83, 165, 260, 435, 557
FspBI	CTAG	2 cut(s)	242, 311
GlaI	GCGC	2 cut(s)	148, 686
GluI	GCNGC	6 cut(s)	80, 83, 165, 260, 435, 557
HaeIII	GGCC	3 cut(s)	333, 547, 559
HapII	CCGG	2 cut(s)	152, 287
HgaI	GACGC	2 cut(s)	265, 292
HhaI	GCGC	2 cut(s)	149, 687
Hin1I	GRCGYC	3 cut(s)	189, 257, 284
Hin1II	CATG	2 cut(s)	255, 706
Hin6I	GCGC	2 cut(s)	147, 685
HinP1I	GCGC	2 cut(s)	147, 685
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	2 cut(s)	152, 287
HphI	GGTGA	2 cut(s)	184, 523
Hpy166II	GTNNAC	2 cut(s)	157, 613
Hpy188I	TCNGA	2 cut(s)	274, 454
Hpy188III	TCNNGA	2 cut(s)	293, 346
Hpy8I	GTNNAC	2 cut(s)	157, 613
Hpy99I	CGWCG	3 cut(s)	191, 283, 286
HpyCH4III	ACNGT	2 cut(s)	492, 667
HpyCH4IV	ACGT	3 cut(s)	189, 445, 504
HpyCH4V	TGCA	3 cut(s)	434, 526, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 283, 553, 707
HpyF3I	CTNAG	2 cut(s)	540, 715
HpySE526I	ACGT	3 cut(s)	189, 445, 504
Hsp92I	GRCGYC	3 cut(s)	189, 257, 284
Hsp92II	CATG	2 cut(s)	255, 706
HspAI	GCGC	2 cut(s)	147, 685
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	479, 659
LmnI	GCTCC	4 cut(s)	7, 154, 247, 729
LpnPI	CCDG	6 cut(s)	165, 219, 300, 423, 512, 603
Lsp1109I	GCAGC	1 cut(s)	446
MaeI	CTAG	2 cut(s)	242, 311
MaeII	ACGT	3 cut(s)	189, 445, 504
MaeIII	GTNAC	2 cut(s)	190, 423
MalI	GATC	2 cut(s)	481, 661
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	2 cut(s)	479, 659
MboII	GAAGA	4 cut(s)	47, 169, 222, 425
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	2 cut(s)	102, 353
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	3 cut(s)	123, 213, 341
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	9 cut(s)	59, 74, 104, 194, 232, 486, 558, 601, 650
Mox20I	TGGCCA	1 cut(s)	333
MroNI	GCCGGC	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	333
MspI	CCGG	2 cut(s)	152, 287
MvnI	CGCG	2 cut(s)	685, 687
MwoI	GCNNNNNNNGC	4 cut(s)	256, 283, 553, 707
NaeI	GCCGGC	1 cut(s)	288
NcoI	CCATGG	2 cut(s)	251, 702
NdeII	GATC	2 cut(s)	479, 659
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	255, 706
NlaIV	GGNNCC	4 cut(s)	9, 249, 631, 661
NmuCI	GTSAC	2 cut(s)	190, 423
PaeR7I	CTCGAG	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	288
PkrI	GCNGC	6 cut(s)	81, 84, 166, 261, 436, 558
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	505
PspN4I	GGNNCC	4 cut(s)	9, 249, 631, 661
PspXI	VCTCGAGB	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	659
RsaI	GTAC	2 cut(s)	441, 489
RsaNI	GTAC	2 cut(s)	440, 488
SalI	GTCGAC	1 cut(s)	155
SatI	GCNGC	6 cut(s)	80, 83, 165, 260, 435, 557
Sau3AI	GATC	2 cut(s)	479, 659
SchI	GAGTC	1 cut(s)	431
SduI	GDGCHC	2 cut(s)	102, 353
Sfr274I	CTCGAG	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SnaBI	TACGTA	1 cut(s)	505
Sse9I	AATT	3 cut(s)	123, 213, 341
SspMI	CTAG	2 cut(s)	242, 311
StyI	CCWWGG	5 cut(s)	251, 483, 693, 702, 725
TaaI	ACNGT	2 cut(s)	492, 667
TaiI	ACGT	3 cut(s)	192, 448, 507
TaqI	TCGA	5 cut(s)	96, 156, 186, 300, 478
TasI	AATT	3 cut(s)	123, 213, 341
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	5 cut(s)	82, 85, 167, 262, 559
TscAI	CASTG	3 cut(s)	436, 658, 672
TseFI	GTSAC	2 cut(s)	190, 423
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	2 cut(s)	190, 423
TspDTI	ATGAA	2 cut(s)	216, 356
TspRI	CASTG	3 cut(s)	436, 658, 672
XapI	RAATTY	1 cut(s)	341
XhoI	CTCGAG	1 cut(s)	95
XmiI	GTMKAC	2 cut(s)	156, 612
XspI	CTAG	2 cut(s)	242, 311
ZraI	GACGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.