Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006376

Physical Location & Seq

Genomic Coordinates Reverse (-)

13368510 .. 13371074

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0144100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGTGTGTCAGGGTGCGTGACAATCAAGCTTACCTACCTCACGAAGGCTTTTCTGGTCACTCCTCGAACGCCAGGCATCCCATCGGGTACAAGCATCAGTCCAGTTTTCTTTTGAAGCCTTCATGGTCGAATTTAATGTTCCGCAAATTCCACACTGCCATGGCAGGGAAATCGCATAGTTCCTCCTCCGTCTGGAAAAACAGGTGGAAATTGTGTGTGTGGAAGCATAACCTCGGATGTAAGAAACTGACTAGGTATAATGTCAGGGTGCGTGACAATCAAGCTTACCTACCTCAGGAAGGCTTTTCTGGTGACAGGGAGGATTACCCTCAGATATTTCTGGAGTTTCTCCAAGACGTATTCGACCCTGTTGAGGATGTGCATGACTTAGATGACAATGAGGTCGAATACGTCTTGGAGAAACTCCAGAAATATCTGAGGACGGAGGAGGAACTATGCGATTTCCCTGCCATGACAGTGTGGAATTTGCGGAACATTAAATTCGACCATGAAGGCTTCAAAGAAAACTGGACTGATGCTTATACCCGATGGGATGCCTGGCGTTCGATAAGTGACTTGTTTTGGACCTGCTGGGAGGATGATTACTTCTGGAGAACTTATTGCTTCAGGCATTATGAGGATGAAGCAGAGCTGGTTAGAAATGGCATTACGCACTTTAACGAGAATGTAATGAAAGACATGCCCCCTCCTGATGATTTCTTCAACAAACGCCAAATAGGAGAGGTCGTTCTTGATCTCTTCCCAGATGTCTCCTTCAGACTGTTCGATTTTATGTGGGACAATGATGTGAATATGGACTTCACCATGTCCCGCACATGTTACAGTACCAATTGCCTGGAAAGGATTTCCAATTTTTGGTTATATGGCTTTTTCTCAGAGTCTGTGAATGTAACGACCAAGCGTGTGGAAGAACTATTAGAAAAGATCAACAACAATACCATTAAGACTGAGAGTCCAATCCGTGTAGAAGAATACTTCATAGCTCTAAGGTGCGTTGAGCGATTGTATGGTGACCACAGGCTTGATGTTATGGGTGTGTTGAGGAAAAATGCTCCACTAGCTCTGCCTGTTATATTAATGCGCTTGAAGCGAAAGCAAGAAGAGTGGGCAAGGTGTCGCTCTGACTTTAACAAAATCTGGGGTGATATATATATGCGAAAAACTATCACAAGTCACTTGATCATCGTAGCTTCTACTTCAAGCAACAGGACTCAAAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000956 GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008334 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0010639 GO:0016070 GO:0016071 GO:0016074 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0019439 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0033043 GO:0033044 GO:0033500 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042592 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0045934 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0065008 GO:0070566 GO:0071044 GO:0071050 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1904356 GO:1904357 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

414

Amino Acids

49.62

Weight (kDa)

6.25

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53770
fragaria_vesca	FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190 FvH4_3g20190
malus_domestica	MD01G1239400.v1.1 MD03G1226500.v1.1 MD05G1272800.v1.1 MD08G1067800.v1.1 MD10G1025000.v1.1 MD11G1244500.v1.1 MD11G1244600.v1.1
prunus_persica	Prupe.4G182900_v2.0.a1
pyrus_communis	pycom03g17420
rosa_chinensis	RchiOBHm_Chr5g0034001
rosa_laevigata	RLG00000033518
rosa_multiflora	Rmu_sc0012341.1_g000005 Rmu_sc0014753.1_g000002
rosa_roxburghii	Rroxscaffold_1G00046230
rosa_rugosa	Rorug05G0144100
rosa_samantha	Rh5AG235000 Rh5BG235800 Rh5CG265600 Rh5DG242200
rosa_wichuraiana	Rw5G021220 Rw5G021460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	596
AccB7I	CCANNNNNTGG	1 cut(s)	876
AciI	CCGC	3 cut(s)	142, 490, 832
AcsI	RAATTY	4 cut(s)	130, 146, 484, 500
AcuI	CTGAAG	2 cut(s)	610, 760
AfaI	GTAC	2 cut(s)	89, 847
AfiI	CCNNNNNNNGG	7 cut(s)	44, 165, 192, 295, 299, 373, 876
AflIII	ACRYGT	1 cut(s)	836
AgsI	TTSAA	5 cut(s)	115, 520, 724, 1108, 1221
AhdI	GACNNNNNGTC	1 cut(s)	972
AjnI	CCWGG	3 cut(s)	71, 557, 855
AloI	GAACNNNNNNTCC	2 cut(s)	732, 764
AluBI	AGCT	7 cut(s)	29, 284, 652, 1004, 1082, 1211, 1241
AluI	AGCT	7 cut(s)	29, 284, 652, 1004, 1082, 1211, 1241
Alw26I	GTCTC	1 cut(s)	775
AlwNI	CAGNNNCTG	1 cut(s)	902
ApoI	RAATTY	4 cut(s)	130, 146, 484, 500
AseI	ATTAAT	1 cut(s)	1097
AspLEI	GCGC	1 cut(s)	1104
AspS9I	GGNCC	1 cut(s)	585
AsuHPI	GGTGA	4 cut(s)	323, 814, 1043, 1175
AvaII	GGWCC	1 cut(s)	585
AxyI	CCTNAGG	1 cut(s)	294
BccI	CCATC	2 cut(s)	89, 543
BcgI	CGANNNNNNTGC	4 cut(s)	153, 187, 449, 483
BciT130I	CCWGG	3 cut(s)	73, 559, 857
BclI	TGATCA	1 cut(s)	1200
BcoDI	GTCTC	1 cut(s)	775
BfaI	CTAG	2 cut(s)	252, 1079
BfuAI	ACCTGC	1 cut(s)	596
Bme1390I	CCNGG	3 cut(s)	73, 559, 857
Bme18I	GGWCC	1 cut(s)	585
BmeRI	GACNNNNNGTC	1 cut(s)	972
BmgT120I	GGNCC	1 cut(s)	585
BmrFI	CCNGG	3 cut(s)	73, 559, 857
BmsI	GCATC	4 cut(s)	85, 103, 526, 544
BpmI	CTGGAG	3 cut(s)	362, 410, 631
BsaJI	CCNNGG	2 cut(s)	159, 232
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	7 cut(s)	44, 165, 192, 295, 299, 373, 876
Bse1I	ACTGG	2 cut(s)	102, 533
Bse21I	CCTNAGG	1 cut(s)	294
BseBI	CCWGG	3 cut(s)	73, 559, 857
BseDI	CCNNGG	2 cut(s)	159, 232
BseGI	GGATG	6 cut(s)	76, 242, 382, 559, 604, 646
BseLI	CCNNNNNNNGG	7 cut(s)	44, 165, 192, 295, 299, 373, 876
BseMII	CTCAG	5 cut(s)	308, 344, 428, 909, 960
BseNI	ACTGG	2 cut(s)	102, 533
BseRI	GAGGAG	3 cut(s)	52, 175, 461
BseYI	CCCAGC	1 cut(s)	591
BslFI	GGGAC	2 cut(s)	812, 814
BslI	CCNNNNNNNGG	7 cut(s)	44, 165, 192, 295, 299, 373, 876
BsmAI	GTCTC	1 cut(s)	775
BsmFI	GGGAC	2 cut(s)	812, 814
Bsp143I	GATC	3 cut(s)	754, 945, 1200
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	3 cut(s)	142, 490, 832
BspCNI	CTCAG	5 cut(s)	307, 343, 429, 908, 961
BspMI	ACCTGC	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	102, 533
BssECI	CCNNGG	2 cut(s)	159, 232
BssMI	GATC	3 cut(s)	754, 945, 1200
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	3 cut(s)	73, 559, 857
Bst4CI	ACNGT	3 cut(s)	478, 783, 845
Bst6I	CTCTTC	2 cut(s)	764, 1116
BstDEI	CTNAG	7 cut(s)	294, 330, 388, 437, 895, 969, 1007
BstDSI	CCRYGG	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	1031
BstENI	CCTNNNNNAGG	3 cut(s)	42, 293, 297
BstF5I	GGATG	6 cut(s)	76, 242, 382, 559, 604, 646
BstHHI	GCGC	1 cut(s)	1104
BstKTI	GATC	3 cut(s)	757, 948, 1203
BstMAI	GTCTC	1 cut(s)	775
BstMBI	GATC	3 cut(s)	754, 945, 1200
BstMWI	GCNNNNNNNGC	2 cut(s)	1079, 1108
BstNI	CCWGG	3 cut(s)	73, 559, 857
BstNSI	RCATGY	2 cut(s)	703, 840
BstPI	GGTNACC	1 cut(s)	1031
BstSCI	CCNGG	3 cut(s)	71, 557, 855
BstXI	CCANNNNNNTGG	2 cut(s)	856, 925
Bsu36I	CCTNAGG	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	6 cut(s)	76, 242, 382, 559, 604, 646
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 483
BveI	ACCTGC	1 cut(s)	596
CaiI	CAGNNNCTG	1 cut(s)	902
CfoI	GCGC	1 cut(s)	1104
Cfr13I	GGNCC	1 cut(s)	585
Csp6I	GTAC	2 cut(s)	88, 846
CspCI	CAANNNNNGTGG	2 cut(s)	1106, 1141
CviAII	CATG	8 cut(s)	123, 160, 383, 472, 509, 700, 826, 837
CviQI	GTAC	2 cut(s)	88, 846
DdeI	CTNAG	7 cut(s)	294, 330, 388, 437, 895, 969, 1007
DpnI	GATC	3 cut(s)	756, 947, 1202
DpnII	GATC	3 cut(s)	754, 945, 1200
DrdI	GACNNNNNNGTC	1 cut(s)	401
DriI	GACNNNNNGTC	1 cut(s)	972
DseDI	GACNNNNNNGTC	1 cut(s)	401
Eam1104I	CTCTTC	2 cut(s)	764, 1116
Eam1105I	GACNNNNNGTC	1 cut(s)	972
EarI	CTCTTC	2 cut(s)	764, 1116
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	585
Eco57I	CTGAAG	2 cut(s)	610, 760
Eco81I	CCTNAGG	1 cut(s)	294
Eco91I	GGTNACC	1 cut(s)	1031
EcoNI	CCTNNNNNAGG	3 cut(s)	42, 293, 297
EcoO65I	GGTNACC	1 cut(s)	1031
EcoRII	CCWGG	3 cut(s)	71, 557, 855
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	8 cut(s)	126, 163, 386, 475, 512, 703, 829, 840
FaqI	GGGAC	2 cut(s)	812, 814
FatI	CATG	8 cut(s)	122, 159, 382, 471, 508, 699, 825, 836
FauI	CCCGC	1 cut(s)	839
FbaI	TGATCA	1 cut(s)	1200
FokI	GGATG	6 cut(s)	63, 249, 389, 566, 611, 653
FspBI	CTAG	2 cut(s)	252, 1079
GlaI	GCGC	1 cut(s)	1103
GsaI	CCCAGC	1 cut(s)	595
GsuI	CTGGAG	3 cut(s)	362, 410, 631
HhaI	GCGC	1 cut(s)	1104
Hin1II	CATG	8 cut(s)	126, 163, 386, 475, 512, 703, 829, 840
Hin6I	GCGC	1 cut(s)	1102
HinP1I	GCGC	1 cut(s)	1102
HindIII	AAGCTT	2 cut(s)	27, 282
HinfI	GANTC	3 cut(s)	899, 973, 1231
HphI	GGTGA	4 cut(s)	323, 814, 1043, 1175
Hpy188I	TCNGA	6 cut(s)	236, 333, 438, 779, 898, 1144
Hpy188III	TCNNGA	8 cut(s)	41, 193, 296, 341, 427, 610, 710, 752
HpyAV	CCTTC	5 cut(s)	38, 129, 293, 506, 784
HpyCH4III	ACNGT	3 cut(s)	478, 783, 845
HpyCH4IV	ACGT	2 cut(s)	357, 411
HpyCH4V	TGCA	1 cut(s)	382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1079, 1108
HpyF3I	CTNAG	7 cut(s)	294, 330, 388, 437, 895, 969, 1007
HpySE526I	ACGT	2 cut(s)	357, 411
Hsp92II	CATG	8 cut(s)	126, 163, 386, 475, 512, 703, 829, 840
HspAI	GCGC	1 cut(s)	1102
Ksp22I	TGATCA	1 cut(s)	1200
Kzo9I	GATC	3 cut(s)	754, 945, 1200
LmnI	GCTCC	1 cut(s)	1078
LweI	GCATC	4 cut(s)	85, 103, 526, 544
MaeI	CTAG	2 cut(s)	252, 1079
MaeII	ACGT	2 cut(s)	357, 411
MaeIII	GTNAC	9 cut(s)	17, 56, 272, 311, 572, 839, 910, 1031, 1193
MalI	GATC	3 cut(s)	756, 947, 1202
MboI	GATC	3 cut(s)	754, 945, 1200
MboII	GAAGA	5 cut(s)	712, 751, 941, 1001, 1133
MfeI	CAATTG	1 cut(s)	850
MluCI	AATT	7 cut(s)	130, 146, 209, 484, 500, 850, 871
MlyI	GAGTC	3 cut(s)	908, 982, 1225
MseI	TTAA	7 cut(s)	134, 498, 678, 963, 1097, 1149, 1243
MslI	CAYNNNNRTG	2 cut(s)	158, 476
MspR9I	CCNGG	3 cut(s)	73, 559, 857
MunI	CAATTG	1 cut(s)	850
MvaI	CCWGG	3 cut(s)	73, 559, 857
MwoI	GCNNNNNNNGC	2 cut(s)	1079, 1108
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	3 cut(s)	754, 945, 1200
NlaIII	CATG	8 cut(s)	126, 163, 386, 475, 512, 703, 829, 840
NmuCI	GTSAC	7 cut(s)	17, 56, 272, 311, 572, 1031, 1193
NspI	RCATGY	2 cut(s)	703, 840
PciI	ACATGT	1 cut(s)	836
PflMI	CCANNNNNTGG	1 cut(s)	876
PleI	GAGTC	3 cut(s)	907, 981, 1225
PpsI	GAGTC	3 cut(s)	907, 981, 1225
PscI	ACATGT	1 cut(s)	836
PshBI	ATTAAT	1 cut(s)	1097
Psp6I	CCWGG	3 cut(s)	71, 557, 855
PspEI	GGTNACC	1 cut(s)	1031
PspFI	CCCAGC	1 cut(s)	591
PspGI	CCWGG	3 cut(s)	71, 557, 855
PspPI	GGNCC	1 cut(s)	585
PstNI	CAGNNNCTG	1 cut(s)	902
RsaI	GTAC	2 cut(s)	89, 847
RsaNI	GTAC	2 cut(s)	88, 846
RseI	CAYNNNNRTG	2 cut(s)	158, 476
SaqAI	TTAA	7 cut(s)	134, 498, 678, 963, 1097, 1149, 1243
Sau3AI	GATC	3 cut(s)	754, 945, 1200
Sau96I	GGNCC	1 cut(s)	585
SchI	GAGTC	3 cut(s)	908, 982, 1225
ScrFI	CCNGG	3 cut(s)	73, 559, 857
SfaNI	GCATC	4 cut(s)	85, 103, 526, 544
SinI	GGWCC	1 cut(s)	585
SmiMI	CAYNNNNRTG	2 cut(s)	158, 476
Sse9I	AATT	7 cut(s)	130, 146, 209, 484, 500, 850, 871
SsiI	CCGC	3 cut(s)	142, 490, 832
SspMI	CTAG	2 cut(s)	252, 1079
StyD4I	CCNGG	3 cut(s)	71, 557, 855
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	3 cut(s)	478, 783, 845
TaiI	ACGT	2 cut(s)	360, 414
TaqI	TCGA	7 cut(s)	65, 128, 363, 405, 504, 566, 786
TasI	AATT	7 cut(s)	130, 146, 209, 484, 500, 850, 871
Tru1I	TTAA	7 cut(s)	134, 498, 678, 963, 1097, 1149, 1243
Tru9I	TTAA	7 cut(s)	134, 498, 678, 963, 1097, 1149, 1243
TscAI	CASTG	2 cut(s)	160, 483
TseFI	GTSAC	7 cut(s)	17, 56, 272, 311, 572, 1031, 1193
Tsp45I	GTSAC	7 cut(s)	17, 56, 272, 311, 572, 1031, 1193
TspDTI	ATGAA	5 cut(s)	111, 525, 657, 707, 988
TspGWI	ACGGA	3 cut(s)	178, 458, 971
TspRI	CASTG	2 cut(s)	160, 483
Van91I	CCANNNNNTGG	1 cut(s)	876
VpaK11BI	GGWCC	1 cut(s)	585
VspI	ATTAAT	1 cut(s)	1097
XagI	CCTNNNNNAGG	3 cut(s)	42, 293, 297
XapI	RAATTY	4 cut(s)	130, 146, 484, 500
XceI	RCATGY	2 cut(s)	703, 840
XspI	CTAG	2 cut(s)	252, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.